Strain Fitness in Shewanella amazonensis SB2B around Sama_2876

Experiment: sodium fluoride 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 25 mM
3,414,455	+		Sama_2875	0.71	-0.2
3,414,455	+		Sama_2875	0.71	-0.0
3,414,456	-		Sama_2875	0.71	-0.4
3,414,456	-		Sama_2875	0.71	-0.7
3,414,463	+		Sama_2875	0.71	-0.8
3,414,463	+		Sama_2875	0.71	+0.0
3,414,463	+		Sama_2875	0.71	-1.6
3,414,463	+		Sama_2875	0.71	-0.7
3,414,464	-		Sama_2875	0.71	-1.4
3,414,464	-		Sama_2875	0.71	+0.2
3,414,464	-		Sama_2875	0.71	-1.1
3,414,464	-		Sama_2875	0.71	-0.6
3,414,464	-		Sama_2875	0.71	-0.7
3,414,464	-		Sama_2875	0.71	+0.6
3,414,464	-		Sama_2875	0.71	-0.3
3,414,578	+		Sama_2875	0.77	+0.2
3,414,605	-		Sama_2875	0.78	-1.4
3,414,628	+		Sama_2875	0.79	+0.1
3,414,628	+		Sama_2875	0.79	+0.5
3,414,628	+		Sama_2875	0.79	-2.0
3,414,628	+		Sama_2875	0.79	+1.3
3,414,628	+		Sama_2875	0.79	-1.5
3,414,629	-		Sama_2875	0.79	-0.5
3,414,629	-		Sama_2875	0.79	-0.7
3,414,629	-		Sama_2875	0.79	+0.1
3,414,632	+		Sama_2875	0.79	-2.2
3,414,632	+		Sama_2875	0.79	-0.8
3,414,662	-		Sama_2875	0.80	+0.4
3,414,714	-		Sama_2875	0.83	-1.4
3,414,719	-		Sama_2875	0.83	-0.1
3,414,731	-		Sama_2875	0.84	+0.6
3,414,731	-		Sama_2875	0.84	+0.8
3,414,731	-		Sama_2875	0.84	+1.0
3,414,731	-		Sama_2875	0.84	+0.2
3,414,731	-		Sama_2875	0.84	+0.1
3,414,731	-		Sama_2875	0.84	+0.8
3,414,731	-		Sama_2875	0.84	-0.8
3,414,745	+		Sama_2875	0.84	-1.6
3,414,745	+		Sama_2875	0.84	+0.9
3,414,745	+		Sama_2875	0.84	-0.2
3,414,816	+		Sama_2875	0.87	+0.6
3,414,816	+		Sama_2875	0.87	-0.6
3,414,817	-		Sama_2875	0.88	+0.1
3,414,817	-		Sama_2875	0.88	-0.4
3,414,891	+				-0.2
3,414,892	-				-1.4
3,414,892	-				+1.0
3,414,892	-				+0.9
3,414,909	+				+0.3
3,414,909	+				-0.0
3,414,910	-				-2.0
3,414,910	-				+0.9
3,414,910	-				+0.2
3,414,926	+				+0.4
3,415,066	+				+0.2
3,415,066	+				+0.9
3,415,091	+				-1.9
3,415,091	+				-1.4
3,415,091	+				-0.7
3,415,091	+				-1.3
3,415,091	+				+0.3
3,415,091	+				+0.0
3,415,091	+				-0.1
3,415,091	+				-0.7
3,415,091	+				-0.6
3,415,091	+				+0.7
3,415,092	-				-0.1
3,415,092	-				+1.2
3,415,092	-				+0.7
3,415,092	-				-0.7
3,415,092	-				+0.2
3,415,092	-				-1.1
3,415,092	-				-0.4
3,415,092	-				-1.0
3,415,117	+				-1.8
3,415,134	+				-0.3
3,415,202	+				+0.5
3,415,203	-				-1.1
3,415,256	-				-0.8
3,415,305	-				+0.5
3,415,352	+				+0.9
3,415,352	+				-0.4
3,415,353	-				-0.4
3,415,359	-				+0.3
3,415,359	-				-0.4
3,415,424	+				-0.9
3,415,425	-				+1.2
3,415,425	-				-0.7
3,415,425	-				-0.6
3,415,425	-				+0.4
3,415,425	-				+0.4
3,415,457	-				+0.1
3,415,477	+				+0.3
3,415,477	+				-0.4
3,415,477	+				+0.3
3,415,478	-				-1.1
3,415,478	-				-1.5
3,415,478	-				-0.9
3,415,502	+				-0.1
3,415,503	-				+0.7
3,415,613	+		Sama_2876	0.20	+0.7
3,415,613	+		Sama_2876	0.20	-0.1
3,415,613	+		Sama_2876	0.20	-1.0
3,415,613	+		Sama_2876	0.20	+1.8
3,415,613	+		Sama_2876	0.20	+0.1
3,415,614	-		Sama_2876	0.20	+0.5
3,415,614	-		Sama_2876	0.20	-1.5
3,415,614	-		Sama_2876	0.20	-0.3
3,415,614	-		Sama_2876	0.20	+0.5
3,415,614	-		Sama_2876	0.20	-0.2
3,415,614	-		Sama_2876	0.20	-1.8
3,415,614	-		Sama_2876	0.20	+0.2
3,415,614	-		Sama_2876	0.20	-0.4
3,415,621	-		Sama_2876	0.21	-0.7
3,415,621	-		Sama_2876	0.21	-0.4
3,415,790	+		Sama_2876	0.39	+0.0
3,415,790	+		Sama_2876	0.39	+0.3
3,415,790	+		Sama_2876	0.39	-0.6
3,415,790	+		Sama_2876	0.39	-0.8
3,415,790	+		Sama_2876	0.39	-1.2
3,415,791	-		Sama_2876	0.39	-0.1
3,415,791	-		Sama_2876	0.39	+0.1
3,415,791	-		Sama_2876	0.39	-0.6
3,415,791	-		Sama_2876	0.39	-0.1
3,415,791	-		Sama_2876	0.39	-0.3
3,415,792	+		Sama_2876	0.39	+0.1
3,415,792	+		Sama_2876	0.39	-0.4
3,415,793	-		Sama_2876	0.39	+0.3
3,415,793	-		Sama_2876	0.39	-1.1
3,415,793	-		Sama_2876	0.39	-0.8
3,415,804	+		Sama_2876	0.40	+0.2
3,415,804	+		Sama_2876	0.40	+1.3
3,415,804	+		Sama_2876	0.40	+1.5
3,415,805	-		Sama_2876	0.40	-0.5
3,415,805	-		Sama_2876	0.40	-0.6
3,415,805	-		Sama_2876	0.40	+1.0
3,415,835	-		Sama_2876	0.43	+0.2
3,415,835	-		Sama_2876	0.43	+0.1
3,415,847	-		Sama_2876	0.45	-0.1
3,415,870	+		Sama_2876	0.47	+0.5
3,415,884	+		Sama_2876	0.49	+0.5
3,415,884	+		Sama_2876	0.49	-0.8
3,415,885	-		Sama_2876	0.49	+0.3
3,415,948	-		Sama_2876	0.55	+0.1
3,415,982	+		Sama_2876	0.59	-0.0
3,415,982	+		Sama_2876	0.59	+1.4
3,415,982	+		Sama_2876	0.59	-0.4
3,415,982	+		Sama_2876	0.59	+0.5
3,415,982	+		Sama_2876	0.59	+0.2
3,415,983	-		Sama_2876	0.59	-0.3
3,415,983	-		Sama_2876	0.59	-0.6
3,415,983	-		Sama_2876	0.59	+1.7
3,416,048	+		Sama_2876	0.66	-1.3
3,416,048	+		Sama_2876	0.66	+0.0
3,416,060	+		Sama_2876	0.67	-0.9
3,416,061	-		Sama_2876	0.67	+0.3
3,416,132	+		Sama_2876	0.75	+4.2
3,416,132	+		Sama_2876	0.75	+0.2
3,416,132	+		Sama_2876	0.75	-0.2
3,416,132	+		Sama_2876	0.75	-0.9
3,416,132	+		Sama_2876	0.75	+1.3
3,416,132	+		Sama_2876	0.75	+0.3
3,416,132	+		Sama_2876	0.75	-0.5
3,416,132	+		Sama_2876	0.75	+0.5
3,416,132	+		Sama_2876	0.75	+0.5
3,416,132	+		Sama_2876	0.75	+0.0
3,416,132	+		Sama_2876	0.75	-0.6
3,416,132	+		Sama_2876	0.75	+1.1
3,416,133	-		Sama_2876	0.75	+0.2
3,416,133	-		Sama_2876	0.75	+1.3
3,416,133	-		Sama_2876	0.75	+1.5
3,416,133	-		Sama_2876	0.75	-0.1
3,416,133	-		Sama_2876	0.75	-0.3
3,416,197	+		Sama_2876	0.82	+2.2
3,416,197	+		Sama_2876	0.82	-0.9
3,416,205	+		Sama_2876	0.83	+1.3
3,416,205	+		Sama_2876	0.83	-1.4
3,416,206	-		Sama_2876	0.83	-0.9
3,416,233	+		Sama_2876	0.86	-1.0
3,416,233	+		Sama_2876	0.86	+0.1
3,416,234	-		Sama_2876	0.86	+0.2
3,416,301	+				+0.6
3,416,301	+				+0.4
3,416,301	+				+0.3
3,416,301	+				-1.6
3,416,302	-				-2.0
3,416,302	-				-0.2
3,416,302	-				+0.2
3,416,302	-				-1.4
3,416,324	+				+1.5
3,416,344	+				+0.0
3,416,344	+				+0.7
3,416,345	-				+0.7
3,416,345	-				+0.7
3,416,360	+				-0.8
3,416,360	+				-0.1
3,416,361	-				+0.6
3,416,367	-				-1.6
3,416,367	-				+1.2
3,416,424	+				-0.6
3,416,441	+				-0.5
3,416,441	+				+0.1
3,416,441	+				+1.3
3,416,441	+				-0.3
3,416,442	-				+0.6