Strain Fitness in Shewanella amazonensis SB2B around Sama_1777

Experiment: sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1776 and Sama_1777 are separated by 27 nucleotidesSama_1777 and Sama_1778 are separated by 56 nucleotidesSama_1778 and Sama_1779 overlap by 7 nucleotidesSama_1779 and Sama_1780 overlap by 1 nucleotides Sama_1776: Sama_1776 - seryl-tRNA synthetase (RefSeq), at 2,171,156 to 2,172,442 _1776 Sama_1777: Sama_1777 - hypothetical protein (RefSeq), at 2,172,470 to 2,172,589 _1777 Sama_1778: Sama_1778 - DsrC-like protein (RefSeq), at 2,172,646 to 2,172,984 _1778 Sama_1779: Sama_1779 - putative uncharacterized protein involved in oxidation of intracellular sulfur (RefSeq), at 2,172,978 to 2,173,271 _1779 Sama_1780: Sama_1780 - putative uncharacterized protein involved in oxidation of intracellular sulfur (RefSeq), at 2,173,271 to 2,173,627 _1780 Position (kb) 2172 2173Strain fitness (log2 ratio) -1 0 1at 2172.443 kb on + strandat 2172.467 kb on + strandat 2172.467 kb on + strandat 2172.467 kb on + strandat 2172.469 kb on + strandat 2172.469 kb on + strandat 2172.492 kb on + strand, within Sama_1777at 2172.506 kb on + strand, within Sama_1777at 2172.506 kb on + strand, within Sama_1777at 2172.547 kb on + strand, within Sama_1777at 2172.547 kb on + strand, within Sama_1777at 2172.580 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 25 mM
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2,172,443 + +0.5
2,172,467 + +1.7
2,172,467 + +0.1
2,172,467 + -0.1
2,172,469 + +1.1
2,172,469 + -0.1
2,172,492 + Sama_1777 0.18 -0.5
2,172,506 + Sama_1777 0.30 +0.6
2,172,506 + Sama_1777 0.30 -0.3
2,172,547 + Sama_1777 0.64 -0.1
2,172,547 + Sama_1777 0.64 +1.0
2,172,580 + +0.2

Or see this region's nucleotide sequence