Strain Fitness in Shewanella amazonensis SB2B around Sama_1175

Experiment: sodium fluoride 25 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	sodium fluoride 25 mM
1,434,369	-		Sama_1174	0.53	-1.9
1,434,435	+		Sama_1174	0.58	-0.9
1,434,483	+		Sama_1174	0.61	-0.2
1,434,483	+		Sama_1174	0.61	-1.3
1,434,484	-		Sama_1174	0.62	+1.0
1,434,601	-		Sama_1174	0.70	+0.4
1,434,626	+		Sama_1174	0.72	-0.8
1,434,626	+		Sama_1174	0.72	-0.2
1,434,626	+		Sama_1174	0.72	-1.2
1,434,803	-		Sama_1174	0.85	-0.2
1,434,803	-		Sama_1174	0.85	-1.3
1,434,809	+		Sama_1174	0.85	-0.1
1,434,810	-		Sama_1174	0.85	+0.4
1,434,810	-		Sama_1174	0.85	-0.7
1,434,841	+		Sama_1174	0.88	+0.5
1,434,841	+		Sama_1174	0.88	+0.0
1,434,842	-		Sama_1174	0.88	-0.6
1,434,870	+		Sama_1174	0.90	-0.3
1,434,870	+		Sama_1174	0.90	-1.2
1,434,870	+		Sama_1174	0.90	+0.2
1,434,870	+		Sama_1174	0.90	+0.2
1,434,870	+		Sama_1174	0.90	-0.6
1,434,870	+		Sama_1174	0.90	-1.1
1,434,871	-		Sama_1174	0.90	-1.3
1,434,874	+				+0.2
1,434,874	+				+0.5
1,434,874	+				-0.9
1,434,874	+				-0.3
1,434,874	+				-0.8
1,434,875	-				-1.4
1,434,875	-				+0.3
1,434,875	-				-2.4
1,434,875	-				+0.1
1,434,875	-				-0.6
1,434,875	-				+1.0
1,434,875	-				+0.1
1,434,967	+				-1.6
1,434,967	+				-1.5
1,434,968	-				-0.1
1,434,968	-				-0.5
1,434,980	+				+0.9
1,435,009	+				+1.3
1,435,010	-				-0.6
1,435,117	+				+0.2
1,435,175	+				-1.0
1,435,176	-				+1.0
1,435,207	+				-0.3
1,435,207	+				-1.5
1,435,207	+				+0.6
1,435,314	+				+0.1
1,435,314	+				-0.5
1,435,315	-				-1.0
1,435,316	+				-1.2
1,435,316	+				+0.1
1,435,316	+				+1.0
1,435,316	+				-0.5
1,435,316	+				-1.2
1,435,317	-				+0.5
1,435,317	-				+0.1
1,435,360	+				+0.8
1,435,361	-				+0.1
1,435,361	-				-0.9
1,435,361	-				-0.1
1,435,361	-				+0.2
1,435,361	-				+0.7
1,435,361	-				-0.4
1,435,362	+				-1.1
1,435,362	+				-0.2
1,435,363	-				+0.4
1,435,363	-				-0.3
1,435,376	+				+0.7
1,435,376	+				+0.1
1,435,376	+				-0.3
1,435,376	+				+0.3
1,435,376	+				+0.3
1,435,376	+				-0.9
1,435,376	+				+0.3
1,435,377	-				+0.2
1,435,377	-				+0.6
1,435,377	-				-0.1
1,435,384	+				+0.1
1,435,384	+				-1.8
1,435,384	+				-0.3
1,435,385	-				+0.7
1,435,417	+				-0.3
1,435,418	-				+0.7
1,435,517	+				-0.5
1,435,517	+				-0.8
1,435,517	+				-1.5
1,435,518	-				-0.2
1,435,518	-				+0.3
1,435,518	-				-0.1
1,435,549	+				-0.7
1,435,582	+		Sama_1175	0.11	+0.3
1,435,583	-		Sama_1175	0.11	+0.4
1,435,617	-		Sama_1175	0.13	+0.7
1,435,617	-		Sama_1175	0.13	-0.0
1,435,622	+		Sama_1175	0.13	-1.3
1,435,622	+		Sama_1175	0.13	-1.6
1,435,622	+		Sama_1175	0.13	-1.3
1,435,622	+		Sama_1175	0.13	+0.2
1,435,622	+		Sama_1175	0.13	+0.4
1,435,622	+		Sama_1175	0.13	-2.6
1,435,622	+		Sama_1175	0.13	+0.5
1,435,623	-		Sama_1175	0.13	-1.1
1,435,623	-		Sama_1175	0.13	-0.2
1,435,623	-		Sama_1175	0.13	+0.4
1,435,624	+		Sama_1175	0.13	+0.4
1,435,624	+		Sama_1175	0.13	-0.1
1,435,624	+		Sama_1175	0.13	+0.9
1,435,624	+		Sama_1175	0.13	-2.3
1,435,625	-		Sama_1175	0.13	-1.2
1,435,635	+		Sama_1175	0.14	+0.3
1,435,666	-		Sama_1175	0.15	+0.7
1,435,699	+		Sama_1175	0.17	+0.6
1,435,699	+		Sama_1175	0.17	+0.9
1,435,699	+		Sama_1175	0.17	+0.1
1,435,700	-		Sama_1175	0.17	-0.3
1,435,700	-		Sama_1175	0.17	+0.4
1,435,700	-		Sama_1175	0.17	+0.1
1,435,710	+		Sama_1175	0.18	+1.0
1,435,710	+		Sama_1175	0.18	+1.7
1,435,727	-		Sama_1175	0.18	+1.7
1,435,740	+		Sama_1175	0.19	-0.3
1,435,768	+		Sama_1175	0.20	-0.3
1,435,768	+		Sama_1175	0.20	+0.7
1,435,805	+		Sama_1175	0.22	+0.2
1,435,805	+		Sama_1175	0.22	+0.5
1,435,805	+		Sama_1175	0.22	-1.1
1,435,805	+		Sama_1175	0.22	+0.2
1,435,806	-		Sama_1175	0.22	-0.3
1,435,806	-		Sama_1175	0.22	+0.3
1,435,806	-		Sama_1175	0.22	-1.1
1,435,806	-		Sama_1175	0.22	-1.4
1,435,806	-		Sama_1175	0.22	-0.3
1,435,806	-		Sama_1175	0.22	-1.3
1,435,806	-		Sama_1175	0.22	+0.5
1,435,806	-		Sama_1175	0.22	-0.5
1,435,833	-		Sama_1175	0.24	+0.4
1,435,833	-		Sama_1175	0.24	-0.1
1,435,849	+		Sama_1175	0.25	+0.9
1,435,849	+		Sama_1175	0.25	-0.8
1,435,850	-		Sama_1175	0.25	+0.3
1,435,850	-		Sama_1175	0.25	+0.6
1,435,850	-		Sama_1175	0.25	+1.1
1,435,850	-		Sama_1175	0.25	-0.2
1,435,900	+		Sama_1175	0.27	+0.7
1,435,900	+		Sama_1175	0.27	+0.7
1,435,901	-		Sama_1175	0.27	-2.2
1,436,008	+		Sama_1175	0.33	-0.3
1,436,042	-		Sama_1175	0.34	-1.6
1,436,042	-		Sama_1175	0.34	+1.1
1,436,042	-		Sama_1175	0.34	-0.9
1,436,074	+		Sama_1175	0.36	+0.1
1,436,160	+		Sama_1175	0.40	-0.3
1,436,191	+		Sama_1175	0.42	-1.2
1,436,191	+		Sama_1175	0.42	-0.2
1,436,192	-		Sama_1175	0.42	-0.3
1,436,192	-		Sama_1175	0.42	-1.1
1,436,234	+		Sama_1175	0.44	-0.6
1,436,234	+		Sama_1175	0.44	-0.2
1,436,234	+		Sama_1175	0.44	-2.6
1,436,234	+		Sama_1175	0.44	-0.1
1,436,235	-		Sama_1175	0.44	+0.5
1,436,245	+		Sama_1175	0.45	-2.6
1,436,263	+		Sama_1175	0.45	-2.3
1,436,269	-		Sama_1175	0.46	-0.1
1,436,276	+		Sama_1175	0.46	-0.5
1,436,313	+		Sama_1175	0.48	-0.3
1,436,313	+		Sama_1175	0.48	-0.9
1,436,313	+		Sama_1175	0.48	+0.2
1,436,314	-		Sama_1175	0.48	+1.3
1,436,314	-		Sama_1175	0.48	+1.5
1,436,314	-		Sama_1175	0.48	+1.0
1,436,314	-		Sama_1175	0.48	+0.3
1,436,362	+		Sama_1175	0.50	+1.0
1,436,434	+		Sama_1175	0.54	-0.3
1,436,435	-		Sama_1175	0.54	-0.6
1,436,454	+		Sama_1175	0.55	-0.6
1,436,454	+		Sama_1175	0.55	-0.4
1,436,455	-		Sama_1175	0.55	-1.1
1,436,472	+		Sama_1175	0.56	+0.5
1,436,497	+		Sama_1175	0.57	-1.8
1,436,497	+		Sama_1175	0.57	+0.7
1,436,497	+		Sama_1175	0.57	+0.9
1,436,497	+		Sama_1175	0.57	+0.2
1,436,497	+		Sama_1175	0.57	+0.2
1,436,497	+		Sama_1175	0.57	-0.6
1,436,497	+		Sama_1175	0.57	-1.5
1,436,498	-		Sama_1175	0.57	+0.9
1,436,498	-		Sama_1175	0.57	-1.7
1,436,498	-		Sama_1175	0.57	-0.8
1,436,498	-		Sama_1175	0.57	+0.8
1,436,498	-		Sama_1175	0.57	-0.1
1,436,674	+		Sama_1175	0.66	-1.6
1,436,861	-		Sama_1175	0.76	+0.5
1,436,865	+		Sama_1175	0.76	+0.6
1,436,865	+		Sama_1175	0.76	-0.5
1,436,900	+		Sama_1175	0.78	-0.5
1,436,901	-		Sama_1175	0.78	+0.2
1,436,901	-		Sama_1175	0.78	-0.6
1,436,901	-		Sama_1175	0.78	+0.0
1,436,901	-		Sama_1175	0.78	-0.2
1,437,040	+		Sama_1175	0.85	-1.3
1,437,040	+		Sama_1175	0.85	-1.5
1,437,040	+		Sama_1175	0.85	+0.5
1,437,041	-		Sama_1175	0.85	-0.9
1,437,041	-		Sama_1175	0.85	-0.9
1,437,041	-		Sama_1175	0.85	+1.1
1,437,041	-		Sama_1175	0.85	-1.7
1,437,041	-		Sama_1175	0.85	-1.8
1,437,041	-		Sama_1175	0.85	-0.9
1,437,117	-		Sama_1175	0.89	-1.1
1,437,138	-		Sama_1175	0.90	+0.5
1,437,142	+		Sama_1175	0.90	-1.1
1,437,142	+		Sama_1175	0.90	+0.1
1,437,143	-				+1.7
1,437,224	+				-0.4
1,437,224	+				-0.6
1,437,224	+				+1.2
1,437,224	+				-1.1
1,437,224	+				+1.3
1,437,225	-				+1.1
1,437,225	-				-0.2
1,437,225	-				+0.4
1,437,225	-				-0.7
1,437,239	+				+0.2
1,437,239	+				+0.2
1,437,239	+				+0.8
1,437,270	+				+1.5
1,437,270	+				+0.0
1,437,279	-				-0.4
1,437,296	+				+0.5
1,437,296	+				+0.7
1,437,297	-				-0.3
1,437,307	-				-0.3
1,437,307	-				+0.1
1,437,307	-				-0.6
1,437,374	+				+0.3
1,437,374	+				+0.3
1,437,375	-				-0.4
1,437,375	-				-0.2
1,437,390	+				-1.1
1,437,390	+				+0.4
1,437,390	+				+1.2
1,437,391	-				+0.7
1,437,398	-				-1.0
1,437,398	-				+0.7
1,437,409	+				-0.2
1,437,435	+				+0.3
1,437,503	+		Sama_1176	0.26	+0.1
1,437,504	-		Sama_1176	0.26	-1.5
1,437,538	+		Sama_1176	0.36	+0.3
1,437,583	+		Sama_1176	0.48	+1.2
1,437,595	+		Sama_1176	0.52	+0.2
1,437,595	+		Sama_1176	0.52	+1.7
1,437,596	-		Sama_1176	0.52	+0.1
1,437,613	+		Sama_1176	0.57	+0.6
1,437,635	+		Sama_1176	0.63	-0.4
1,437,646	+		Sama_1176	0.66	+0.1
1,437,646	+		Sama_1176	0.66	+0.7
1,437,673	+		Sama_1176	0.74	+0.0
1,437,673	+		Sama_1176	0.74	+0.1
1,437,673	+		Sama_1176	0.74	+0.7
1,437,674	-		Sama_1176	0.74	+0.1
1,437,719	+		Sama_1176	0.87	+0.6
1,437,719	+		Sama_1176	0.87	+0.7
1,437,719	+		Sama_1176	0.87	-1.0
1,437,719	+		Sama_1176	0.87	-1.5
1,437,719	+		Sama_1176	0.87	-0.9
1,437,719	+		Sama_1176	0.87	-0.1
1,437,720	-		Sama_1176	0.87	+0.3
1,437,720	-		Sama_1176	0.87	+0.7
1,437,720	-		Sama_1176	0.87	+1.3
1,437,739	+				+1.3
1,437,739	+				+0.3
1,437,758	-				+0.3
1,437,764	+				+0.9
1,437,764	+				+1.7
1,437,764	+				-0.4
1,437,841	+				+1.0
1,437,841	+				-1.1
1,437,884	+				-0.9
1,437,886	+				-0.0
1,437,886	+				-0.9
1,437,887	-				-0.1
1,437,908	+				-2.1
1,437,909	-				+0.1
1,437,929	+				-1.1
1,437,944	+				+0.4
1,437,944	+				-1.0
1,437,944	+				+0.3
1,437,944	+				-1.8
1,437,944	+				-0.1
1,437,945	-				+0.3
1,437,945	-				+0.1
1,437,971	+				-0.4
1,438,014	+				+0.3
1,438,014	+				-0.4
1,438,014	+				-0.4
1,438,014	+				+0.3
1,438,014	+				-0.5
1,438,015	-				-0.3
1,438,015	-				-0.7
1,438,015	-				+1.1
1,438,015	-				+0.3
1,438,020	-				+0.3
1,438,038	+				+1.7
1,438,043	+				-0.5
1,438,044	-				-0.7
1,438,114	-		Sama_1177	0.12	-2.2
1,438,114	-		Sama_1177	0.12	+0.9
1,438,114	-		Sama_1177	0.12	+1.1
1,438,114	-		Sama_1177	0.12	-0.3
1,438,232	+		Sama_1177	0.20	+1.2
1,438,232	+		Sama_1177	0.20	-0.6
1,438,266	-		Sama_1177	0.22	+0.2