Experiment: sodium fluoride 25 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0467 and Sama_0468 are separated by 45 nucleotides Sama_0468 and Sama_0469 overlap by 4 nucleotides Sama_0469 and Sama_0470 are separated by 5 nucleotides
Sama_0467: Sama_0467 - rod shape-determining protein MreB (RefSeq), at 573,182 to 574,231
_0467
Sama_0468: Sama_0468 - rod shape-determining protein MreC (RefSeq), at 574,277 to 575,206
_0468
Sama_0469: Sama_0469 - rod shape-determining protein MreD (RefSeq), at 575,203 to 575,691
_0469
Sama_0470: Sama_0470 - maf protein (RefSeq), at 575,697 to 576,281
_0470
Position (kb) 574
575
576 Strain fitness (log2 ratio) -2
-1
0
1
2 at 574.276 kb on + strand at 574.276 kb on + strand at 574.276 kb on + strand at 575.679 kb on + strand at 575.679 kb on + strand at 575.689 kb on + strand at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.838 kb on + strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.839 kb on - strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.894 kb on + strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.895 kb on - strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.929 kb on + strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.930 kb on - strand, within Sama_0470 at 575.957 kb on + strand, within Sama_0470 at 575.958 kb on - strand, within Sama_0470 at 576.056 kb on + strand, within Sama_0470 at 576.057 kb on - strand, within Sama_0470 at 576.057 kb on - strand, within Sama_0470 at 576.113 kb on + strand, within Sama_0470 at 576.123 kb on + strand, within Sama_0470 at 576.123 kb on + strand, within Sama_0470 at 576.124 kb on - strand, within Sama_0470 at 576.124 kb on - strand, within Sama_0470 at 576.149 kb on + strand, within Sama_0470 at 576.149 kb on + strand, within Sama_0470 at 576.150 kb on - strand, within Sama_0470 at 576.162 kb on + strand, within Sama_0470 at 576.162 kb on + strand, within Sama_0470 at 576.163 kb on - strand, within Sama_0470 at 576.167 kb on + strand, within Sama_0470 at 576.167 kb on + strand, within Sama_0470 at 576.168 kb on - strand, within Sama_0470
Per-strain Table
Position Strand Gene LocusTag Fraction sodium fluoride 25 mM remove 574,276 + -0.1 574,276 + +0.8 574,276 + +0.2 575,679 + -0.1 575,679 + +0.6 575,689 + +0.4 575,838 + Sama_0470 0.24 -0.3 575,838 + Sama_0470 0.24 +0.7 575,838 + Sama_0470 0.24 -1.1 575,838 + Sama_0470 0.24 +0.0 575,838 + Sama_0470 0.24 -1.4 575,838 + Sama_0470 0.24 +0.5 575,838 + Sama_0470 0.24 -1.4 575,838 + Sama_0470 0.24 -0.4 575,839 - Sama_0470 0.24 -0.3 575,839 - Sama_0470 0.24 +1.1 575,839 - Sama_0470 0.24 +1.5 575,839 - Sama_0470 0.24 +1.0 575,839 - Sama_0470 0.24 +2.6 575,839 - Sama_0470 0.24 +0.7 575,839 - Sama_0470 0.24 +1.0 575,894 + Sama_0470 0.34 -1.0 575,894 + Sama_0470 0.34 -2.1 575,894 + Sama_0470 0.34 +0.3 575,894 + Sama_0470 0.34 -0.6 575,894 + Sama_0470 0.34 -0.3 575,894 + Sama_0470 0.34 +0.7 575,894 + Sama_0470 0.34 +0.4 575,895 - Sama_0470 0.34 +1.3 575,895 - Sama_0470 0.34 +1.5 575,895 - Sama_0470 0.34 +0.4 575,895 - Sama_0470 0.34 -0.4 575,895 - Sama_0470 0.34 +2.7 575,895 - Sama_0470 0.34 +0.7 575,929 + Sama_0470 0.40 +1.0 575,929 + Sama_0470 0.40 -0.3 575,929 + Sama_0470 0.40 -1.8 575,929 + Sama_0470 0.40 -0.6 575,929 + Sama_0470 0.40 +0.3 575,929 + Sama_0470 0.40 -1.7 575,929 + Sama_0470 0.40 -0.1 575,930 - Sama_0470 0.40 +1.8 575,930 - Sama_0470 0.40 +1.2 575,930 - Sama_0470 0.40 -0.2 575,930 - Sama_0470 0.40 +1.3 575,957 + Sama_0470 0.44 +0.0 575,958 - Sama_0470 0.45 +0.9 576,056 + Sama_0470 0.61 -1.0 576,057 - Sama_0470 0.62 +0.6 576,057 - Sama_0470 0.62 +1.6 576,113 + Sama_0470 0.71 -0.8 576,123 + Sama_0470 0.73 -0.8 576,123 + Sama_0470 0.73 -1.1 576,124 - Sama_0470 0.73 +1.5 576,124 - Sama_0470 0.73 +1.6 576,149 + Sama_0470 0.77 -2.4 576,149 + Sama_0470 0.77 -0.4 576,150 - Sama_0470 0.77 +1.7 576,162 + Sama_0470 0.79 -1.3 576,162 + Sama_0470 0.79 +0.1 576,163 - Sama_0470 0.80 +1.1 576,167 + Sama_0470 0.80 -1.8 576,167 + Sama_0470 0.80 -0.7 576,168 - Sama_0470 0.81 +0.9
Or see this region's nucleotide sequence