Strain Fitness in Shewanella amazonensis SB2B around Sama_0283

Experiment: sodium fluoride 25 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_0281 and Sama_0282 overlap by 11 nucleotidesSama_0282 and Sama_0283 are separated by 25 nucleotidesSama_0283 and Sama_0284 are separated by 290 nucleotides Sama_0281: Sama_0281 - modification methylase (cytosine-specific methyltransferase (RefSeq), at 328,984 to 330,546 _0281 Sama_0282: Sama_0282 - putative DNA mismatch endonuclease protein (RefSeq), at 330,536 to 331,021 _0282 Sama_0283: Sama_0283 - hypothetical protein (RefSeq), at 331,047 to 331,655 _0283 Sama_0284: Sama_0284 - sodium/alanine symporter (RefSeq), at 331,946 to 333,379 _0284 Position (kb) 331 332Strain fitness (log2 ratio) -2 -1 0 1 2at 330.554 kb on + strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.555 kb on - strandat 330.686 kb on - strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.689 kb on + strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.690 kb on - strand, within Sama_0282at 330.700 kb on - strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.708 kb on + strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.709 kb on - strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.859 kb on + strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.860 kb on - strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.968 kb on + strand, within Sama_0282at 330.969 kb on - strand, within Sama_0282at 331.030 kb on - strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.042 kb on + strandat 331.049 kb on - strandat 331.059 kb on + strandat 331.059 kb on + strandat 331.060 kb on - strandat 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.154 kb on + strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.155 kb on - strand, within Sama_0283at 331.192 kb on + strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.193 kb on - strand, within Sama_0283at 331.202 kb on + strand, within Sama_0283at 331.253 kb on + strand, within Sama_0283at 331.263 kb on - strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.350 kb on + strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.351 kb on - strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.356 kb on + strand, within Sama_0283at 331.426 kb on + strand, within Sama_0283at 331.434 kb on + strand, within Sama_0283at 331.435 kb on - strand, within Sama_0283at 331.454 kb on + strand, within Sama_0283at 331.474 kb on - strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.521 kb on + strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.522 kb on - strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.569 kb on + strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.570 kb on - strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.574 kb on + strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.575 kb on - strand, within Sama_0283at 331.655 kb on + strandat 331.655 kb on + strandat 331.655 kb on + strandat 331.656 kb on - strandat 331.668 kb on + strandat 331.668 kb on + strandat 331.668 kb on + strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.669 kb on - strandat 331.694 kb on - strandat 331.703 kb on + strandat 331.741 kb on + strandat 331.741 kb on + strandat 331.741 kb on - strandat 331.742 kb on - strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.746 kb on + strandat 331.784 kb on + strandat 331.785 kb on - strandat 331.809 kb on - strandat 331.809 kb on - strandat 331.830 kb on - strandat 331.837 kb on - strandat 331.843 kb on + strandat 331.889 kb on + strandat 331.889 kb on + strandat 331.890 kb on - strandat 331.890 kb on - strandat 331.901 kb on - strandat 331.908 kb on + strandat 331.908 kb on + strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.909 kb on - strandat 331.929 kb on - strandat 331.933 kb on + strandat 332.057 kb on - strandat 332.057 kb on - strandat 332.060 kb on + strandat 332.060 kb on + strandat 332.060 kb on + strandat 332.060 kb on + strandat 332.085 kb on - strandat 332.088 kb on + strandat 332.088 kb on + strandat 332.088 kb on + strandat 332.089 kb on - strandat 332.106 kb on + strand, within Sama_0284at 332.107 kb on - strand, within Sama_0284at 332.107 kb on - strand, within Sama_0284at 332.146 kb on + strand, within Sama_0284at 332.147 kb on - strand, within Sama_0284at 332.147 kb on - strand, within Sama_0284at 332.147 kb on - strand, within Sama_0284at 332.204 kb on - strand, within Sama_0284at 332.227 kb on - strand, within Sama_0284at 332.227 kb on - strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.317 kb on + strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.318 kb on - strand, within Sama_0284at 332.321 kb on + strand, within Sama_0284at 332.321 kb on + strand, within Sama_0284at 332.322 kb on - strand, within Sama_0284at 332.322 kb on - strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.366 kb on + strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.367 kb on - strand, within Sama_0284at 332.371 kb on - strand, within Sama_0284at 332.374 kb on + strand, within Sama_0284at 332.375 kb on - strand, within Sama_0284at 332.440 kb on + strand, within Sama_0284at 332.489 kb on + strand, within Sama_0284at 332.489 kb on + strand, within Sama_0284at 332.490 kb on - strand, within Sama_0284at 332.500 kb on - strand, within Sama_0284at 332.647 kb on + strand, within Sama_0284at 332.648 kb on - strand, within Sama_0284

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Per-strain Table

Position Strand Gene LocusTag Fraction sodium fluoride 25 mM
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330,554 + +0.1
330,555 - -0.4
330,555 - -0.0
330,555 - -1.1
330,555 - -0.3
330,555 - -0.7
330,686 - Sama_0282 0.31 -0.3
330,689 + Sama_0282 0.31 +0.7
330,689 + Sama_0282 0.31 -0.1
330,689 + Sama_0282 0.31 -1.2
330,690 - Sama_0282 0.32 +1.0
330,690 - Sama_0282 0.32 +1.0
330,700 - Sama_0282 0.34 +0.3
330,708 + Sama_0282 0.35 -0.5
330,708 + Sama_0282 0.35 +0.2
330,709 - Sama_0282 0.36 -0.1
330,709 - Sama_0282 0.36 -2.1
330,709 - Sama_0282 0.36 +0.3
330,859 + Sama_0282 0.66 -0.3
330,859 + Sama_0282 0.66 -0.8
330,859 + Sama_0282 0.66 +0.5
330,859 + Sama_0282 0.66 -0.2
330,860 - Sama_0282 0.67 -1.0
330,860 - Sama_0282 0.67 +0.5
330,860 - Sama_0282 0.67 -0.2
330,860 - Sama_0282 0.67 -0.9
330,860 - Sama_0282 0.67 -0.8
330,968 + Sama_0282 0.89 +0.5
330,968 + Sama_0282 0.89 -0.4
330,969 - Sama_0282 0.89 +0.2
331,030 - -1.1
331,042 + -0.4
331,042 + -1.3
331,042 + +0.8
331,049 - -0.0
331,059 + +0.2
331,059 + -0.5
331,060 - -0.9
331,154 + Sama_0283 0.18 +1.0
331,154 + Sama_0283 0.18 +1.5
331,154 + Sama_0283 0.18 -0.8
331,154 + Sama_0283 0.18 -1.5
331,154 + Sama_0283 0.18 +0.2
331,154 + Sama_0283 0.18 +1.4
331,154 + Sama_0283 0.18 +1.7
331,155 - Sama_0283 0.18 +1.0
331,155 - Sama_0283 0.18 -1.1
331,155 - Sama_0283 0.18 +1.3
331,155 - Sama_0283 0.18 -1.8
331,155 - Sama_0283 0.18 +0.8
331,155 - Sama_0283 0.18 -0.2
331,155 - Sama_0283 0.18 +0.5
331,192 + Sama_0283 0.24 -0.9
331,193 - Sama_0283 0.24 +0.1
331,193 - Sama_0283 0.24 -0.6
331,193 - Sama_0283 0.24 -0.2
331,193 - Sama_0283 0.24 +0.7
331,193 - Sama_0283 0.24 +1.1
331,202 + Sama_0283 0.25 +1.1
331,253 + Sama_0283 0.34 -0.1
331,263 - Sama_0283 0.35 -0.7
331,350 + Sama_0283 0.50 +1.1
331,350 + Sama_0283 0.50 +0.2
331,350 + Sama_0283 0.50 +0.5
331,350 + Sama_0283 0.50 -1.3
331,350 + Sama_0283 0.50 -0.2
331,350 + Sama_0283 0.50 -1.0
331,350 + Sama_0283 0.50 +1.1
331,350 + Sama_0283 0.50 -1.3
331,350 + Sama_0283 0.50 -0.5
331,350 + Sama_0283 0.50 +0.5
331,351 - Sama_0283 0.50 +0.3
331,351 - Sama_0283 0.50 -0.3
331,351 - Sama_0283 0.50 +0.3
331,351 - Sama_0283 0.50 -0.2
331,356 + Sama_0283 0.51 +0.1
331,356 + Sama_0283 0.51 -0.2
331,426 + Sama_0283 0.62 +0.2
331,434 + Sama_0283 0.64 +1.0
331,435 - Sama_0283 0.64 -1.6
331,454 + Sama_0283 0.67 -0.9
331,474 - Sama_0283 0.70 +0.7
331,521 + Sama_0283 0.78 +0.1
331,521 + Sama_0283 0.78 +0.9
331,521 + Sama_0283 0.78 -0.1
331,521 + Sama_0283 0.78 +0.1
331,522 - Sama_0283 0.78 +0.3
331,522 - Sama_0283 0.78 +0.7
331,522 - Sama_0283 0.78 -0.3
331,522 - Sama_0283 0.78 +0.0
331,522 - Sama_0283 0.78 +0.6
331,522 - Sama_0283 0.78 -0.0
331,522 - Sama_0283 0.78 -0.6
331,522 - Sama_0283 0.78 +0.6
331,569 + Sama_0283 0.86 -0.7
331,569 + Sama_0283 0.86 +0.1
331,569 + Sama_0283 0.86 +0.3
331,570 - Sama_0283 0.86 +0.0
331,570 - Sama_0283 0.86 +1.6
331,570 - Sama_0283 0.86 -1.0
331,574 + Sama_0283 0.87 -0.6
331,574 + Sama_0283 0.87 +1.1
331,574 + Sama_0283 0.87 +0.6
331,574 + Sama_0283 0.87 -0.8
331,574 + Sama_0283 0.87 -0.3
331,574 + Sama_0283 0.87 +0.3
331,575 - Sama_0283 0.87 +1.1
331,575 - Sama_0283 0.87 +1.0
331,575 - Sama_0283 0.87 -1.0
331,655 + +0.0
331,655 + -0.0
331,655 + -0.3
331,656 - +0.5
331,668 + -0.7
331,668 + -0.9
331,668 + +0.4
331,669 - +0.1
331,669 - -0.5
331,669 - +0.6
331,669 - +1.1
331,694 - -0.4
331,703 + +1.0
331,741 + -0.5
331,741 + +0.7
331,741 - -0.2
331,742 - +0.1
331,746 + +0.3
331,746 + -0.5
331,746 + -0.0
331,746 + -0.2
331,784 + -1.3
331,785 - -0.5
331,809 - -1.0
331,809 - -0.2
331,830 - +0.5
331,837 - -0.8
331,843 + -0.0
331,889 + -1.2
331,889 + -0.7
331,890 - +1.3
331,890 - +0.8
331,901 - -0.2
331,908 + -1.8
331,908 + -0.7
331,909 - -1.2
331,909 - +0.8
331,909 - +0.2
331,909 - +0.1
331,909 - -0.6
331,929 - +2.1
331,933 + +0.1
332,057 - +0.7
332,057 - +0.1
332,060 + +1.3
332,060 + -0.2
332,060 + +0.2
332,060 + -2.2
332,085 - +0.5
332,088 + -0.3
332,088 + +1.4
332,088 + +0.4
332,089 - -0.6
332,106 + Sama_0284 0.11 -1.1
332,107 - Sama_0284 0.11 -0.3
332,107 - Sama_0284 0.11 -0.8
332,146 + Sama_0284 0.14 +0.6
332,147 - Sama_0284 0.14 -0.3
332,147 - Sama_0284 0.14 +1.1
332,147 - Sama_0284 0.14 -1.3
332,204 - Sama_0284 0.18 +0.4
332,227 - Sama_0284 0.20 +1.4
332,227 - Sama_0284 0.20 -0.5
332,317 + Sama_0284 0.26 +0.4
332,317 + Sama_0284 0.26 -0.5
332,317 + Sama_0284 0.26 -1.9
332,317 + Sama_0284 0.26 -0.3
332,317 + Sama_0284 0.26 -1.0
332,317 + Sama_0284 0.26 -0.5
332,318 - Sama_0284 0.26 +0.2
332,318 - Sama_0284 0.26 -0.6
332,318 - Sama_0284 0.26 -2.0
332,318 - Sama_0284 0.26 -1.6
332,318 - Sama_0284 0.26 -0.4
332,318 - Sama_0284 0.26 +0.4
332,318 - Sama_0284 0.26 +1.0
332,318 - Sama_0284 0.26 -2.6
332,321 + Sama_0284 0.26 -0.2
332,321 + Sama_0284 0.26 -0.6
332,322 - Sama_0284 0.26 -1.1
332,322 - Sama_0284 0.26 -0.5
332,366 + Sama_0284 0.29 -0.8
332,366 + Sama_0284 0.29 +1.1
332,366 + Sama_0284 0.29 -1.3
332,366 + Sama_0284 0.29 -1.1
332,366 + Sama_0284 0.29 +1.2
332,366 + Sama_0284 0.29 +0.3
332,366 + Sama_0284 0.29 -0.1
332,366 + Sama_0284 0.29 -0.0
332,367 - Sama_0284 0.29 +0.1
332,367 - Sama_0284 0.29 -0.6
332,367 - Sama_0284 0.29 +1.1
332,367 - Sama_0284 0.29 +0.1
332,367 - Sama_0284 0.29 -0.1
332,367 - Sama_0284 0.29 +0.5
332,367 - Sama_0284 0.29 -0.1
332,367 - Sama_0284 0.29 -0.3
332,367 - Sama_0284 0.29 -0.8
332,367 - Sama_0284 0.29 +0.6
332,371 - Sama_0284 0.30 +0.4
332,374 + Sama_0284 0.30 -0.2
332,375 - Sama_0284 0.30 -0.8
332,440 + Sama_0284 0.34 +0.5
332,489 + Sama_0284 0.38 -0.3
332,489 + Sama_0284 0.38 -0.3
332,490 - Sama_0284 0.38 -1.9
332,500 - Sama_0284 0.39 -1.1
332,647 + Sama_0284 0.49 +0.3
332,648 - Sama_0284 0.49 -0.1

Or see this region's nucleotide sequence