Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19305

Experiment: MM23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19300 and BWI76_RS19305 are separated by 10 nucleotidesBWI76_RS19305 and BWI76_RS19310 overlap by 29 nucleotidesBWI76_RS19310 and BWI76_RS19315 overlap by 4 nucleotides BWI76_RS19300: BWI76_RS19300 - ABC transporter ATP-binding protein, at 4,020,682 to 4,021,455 _RS19300 BWI76_RS19305: BWI76_RS19305 - ABC transporter ATP-binding protein, at 4,021,466 to 4,022,329 _RS19305 BWI76_RS19310: BWI76_RS19310 - ABC transporter permease, at 4,022,301 to 4,023,206 _RS19310 BWI76_RS19315: BWI76_RS19315 - ABC transporter permease, at 4,023,203 to 4,024,240 _RS19315 Position (kb) 4021 4022 4023Strain fitness (log2 ratio) -1 0 1 2 3 4at 4020.590 kb on - strandat 4020.658 kb on + strandat 4020.658 kb on + strandat 4020.662 kb on - strandat 4020.662 kb on - strandat 4020.675 kb on + strandat 4020.688 kb on - strandat 4020.700 kb on - strandat 4020.700 kb on - strandat 4020.731 kb on + strandat 4020.731 kb on + strandat 4020.739 kb on - strandat 4020.748 kb on + strandat 4020.762 kb on + strand, within BWI76_RS19300at 4020.770 kb on + strand, within BWI76_RS19300at 4020.770 kb on + strand, within BWI76_RS19300at 4020.770 kb on + strand, within BWI76_RS19300at 4020.778 kb on - strand, within BWI76_RS19300at 4020.873 kb on + strand, within BWI76_RS19300at 4021.002 kb on - strand, within BWI76_RS19300at 4021.052 kb on - strand, within BWI76_RS19300at 4021.166 kb on - strand, within BWI76_RS19300at 4021.275 kb on + strand, within BWI76_RS19300at 4021.917 kb on + strand, within BWI76_RS19305at 4021.948 kb on + strand, within BWI76_RS19305at 4022.054 kb on + strand, within BWI76_RS19305at 4022.157 kb on + strand, within BWI76_RS19305at 4022.241 kb on - strand, within BWI76_RS19305at 4022.298 kb on + strandat 4022.546 kb on - strand, within BWI76_RS19310at 4022.644 kb on - strand, within BWI76_RS19310

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Per-strain Table

Position Strand Gene LocusTag Fraction MM23
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4,020,590 - -0.7
4,020,658 + +0.6
4,020,658 + -0.6
4,020,662 - +0.6
4,020,662 - -0.4
4,020,675 + -0.0
4,020,688 - -0.6
4,020,700 - +1.4
4,020,700 - -0.8
4,020,731 + -0.7
4,020,731 + -1.5
4,020,739 - +0.4
4,020,748 + -0.2
4,020,762 + BWI76_RS19300 0.10 -0.4
4,020,770 + BWI76_RS19300 0.11 -0.1
4,020,770 + BWI76_RS19300 0.11 +3.6
4,020,770 + BWI76_RS19300 0.11 +4.3
4,020,778 - BWI76_RS19300 0.12 -0.1
4,020,873 + BWI76_RS19300 0.25 -1.2
4,021,002 - BWI76_RS19300 0.41 -1.6
4,021,052 - BWI76_RS19300 0.48 +0.3
4,021,166 - BWI76_RS19300 0.63 +0.4
4,021,275 + BWI76_RS19300 0.77 -1.2
4,021,917 + BWI76_RS19305 0.52 +0.5
4,021,948 + BWI76_RS19305 0.56 -0.1
4,022,054 + BWI76_RS19305 0.68 +2.7
4,022,157 + BWI76_RS19305 0.80 -1.0
4,022,241 - BWI76_RS19305 0.90 +0.3
4,022,298 + -1.6
4,022,546 - BWI76_RS19310 0.27 +1.6
4,022,644 - BWI76_RS19310 0.38 -0.4

Or see this region's nucleotide sequence