Experiment: MM23
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS06090 and BWI76_RS06095 are separated by 106 nucleotides BWI76_RS06095 and BWI76_RS06100 are separated by 200 nucleotides BWI76_RS06100 and BWI76_RS06105 are separated by 117 nucleotides
BWI76_RS06090: BWI76_RS06090 - delta-aminolevulinic acid dehydratase, at 1,280,517 to 1,281,491
_RS06090
BWI76_RS06095: BWI76_RS06095 - D-alanyl-D-alanine- carboxypeptidase/endopeptidase AmpH, at 1,281,598 to 1,282,758
_RS06095
BWI76_RS06100: BWI76_RS06100 - isochorismatase family protein, at 1,282,959 to 1,283,492
_RS06100
BWI76_RS06105: BWI76_RS06105 - microcin B17 transporter, at 1,283,610 to 1,284,830
_RS06105
Position (kb)
1281
1282
1283 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1281.578 kb on + strand at 1282.085 kb on - strand, within BWI76_RS06095 at 1282.097 kb on - strand, within BWI76_RS06095 at 1282.148 kb on + strand, within BWI76_RS06095 at 1282.207 kb on + strand, within BWI76_RS06095 at 1282.261 kb on + strand, within BWI76_RS06095 at 1282.321 kb on - strand, within BWI76_RS06095 at 1282.461 kb on - strand, within BWI76_RS06095 at 1282.682 kb on + strand at 1282.716 kb on + strand at 1282.990 kb on - strand at 1283.110 kb on + strand, within BWI76_RS06100 at 1283.274 kb on + strand, within BWI76_RS06100 at 1283.407 kb on - strand, within BWI76_RS06100 at 1283.413 kb on + strand, within BWI76_RS06100 at 1283.427 kb on + strand, within BWI76_RS06100 at 1283.486 kb on + strand at 1283.542 kb on + strand at 1283.573 kb on - strand at 1283.601 kb on - strand at 1283.665 kb on + strand at 1283.723 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MM23 remove 1,281,578 + -0.1 1,282,085 - BWI76_RS06095 0.42 +1.0 1,282,097 - BWI76_RS06095 0.43 +0.7 1,282,148 + BWI76_RS06095 0.47 +0.2 1,282,207 + BWI76_RS06095 0.52 +0.3 1,282,261 + BWI76_RS06095 0.57 +1.3 1,282,321 - BWI76_RS06095 0.62 -0.2 1,282,461 - BWI76_RS06095 0.74 -0.4 1,282,682 + +0.5 1,282,716 + +0.2 1,282,990 - +0.6 1,283,110 + BWI76_RS06100 0.28 -0.3 1,283,274 + BWI76_RS06100 0.59 -1.8 1,283,407 - BWI76_RS06100 0.84 +2.3 1,283,413 + BWI76_RS06100 0.85 -0.1 1,283,427 + BWI76_RS06100 0.88 +0.5 1,283,486 + -0.8 1,283,542 + +0.9 1,283,573 - -0.4 1,283,601 - -0.9 1,283,665 + -0.3 1,283,723 - -0.2
Or see this region's nucleotide sequence