Experiment: Roth35v2
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS02275 and BWI76_RS02280 are separated by 115 nucleotides BWI76_RS02280 and BWI76_RS02285 are separated by 145 nucleotides BWI76_RS02285 and BWI76_RS02290 are separated by 34 nucleotides BWI76_RS02290 and BWI76_RS02295 are separated by 99 nucleotides
BWI76_RS02275: BWI76_RS02275 - TetR family transcriptional regulator, at 467,579 to 468,175
_RS02275
BWI76_RS02280: BWI76_RS02280 - NAD(P)H dehydrogenase (quinone), at 468,291 to 468,878
_RS02280
BWI76_RS02285: BWI76_RS02285 - hypothetical protein, at 469,024 to 469,419
_RS02285
BWI76_RS02290: BWI76_RS02290 - hypothetical protein, at 469,454 to 470,263
_RS02290
BWI76_RS02295: BWI76_RS02295 - glycosyl transferase family 1, at 470,363 to 472,585
_RS02295
Position (kb) 469
470 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4
5 at 468.144 kb on - strand at 468.151 kb on - strand at 468.320 kb on + strand at 468.351 kb on - strand, within BWI76_RS02280 at 468.483 kb on - strand, within BWI76_RS02280 at 468.504 kb on - strand, within BWI76_RS02280 at 468.592 kb on + strand, within BWI76_RS02280 at 468.616 kb on + strand, within BWI76_RS02280 at 468.661 kb on - strand, within BWI76_RS02280 at 468.714 kb on - strand, within BWI76_RS02280 at 468.729 kb on - strand, within BWI76_RS02280 at 468.770 kb on + strand, within BWI76_RS02280 at 468.798 kb on - strand, within BWI76_RS02280 at 468.806 kb on - strand, within BWI76_RS02280 at 468.808 kb on + strand, within BWI76_RS02280 at 468.811 kb on - strand, within BWI76_RS02280 at 468.831 kb on - strand at 468.845 kb on - strand at 468.867 kb on + strand at 468.867 kb on - strand at 468.887 kb on + strand at 468.916 kb on + strand at 468.916 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.917 kb on + strand at 468.924 kb on - strand at 468.924 kb on - strand at 468.926 kb on + strand at 468.926 kb on + strand at 468.934 kb on - strand at 468.986 kb on - strand at 468.986 kb on - strand at 468.988 kb on - strand at 469.029 kb on - strand at 469.035 kb on + strand at 469.053 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.059 kb on + strand at 469.061 kb on - strand at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.067 kb on - strand, within BWI76_RS02285 at 469.069 kb on - strand, within BWI76_RS02285 at 469.244 kb on + strand, within BWI76_RS02285 at 469.275 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.277 kb on + strand, within BWI76_RS02285 at 469.353 kb on - strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.372 kb on + strand, within BWI76_RS02285 at 469.408 kb on - strand at 469.411 kb on - strand at 469.533 kb on + strand at 469.542 kb on - strand, within BWI76_RS02290 at 469.542 kb on - strand, within BWI76_RS02290 at 469.542 kb on - strand, within BWI76_RS02290 at 469.599 kb on - strand, within BWI76_RS02290 at 469.608 kb on + strand, within BWI76_RS02290 at 469.608 kb on + strand at 469.608 kb on + strand, within BWI76_RS02290 at 469.608 kb on + strand at 469.616 kb on - strand, within BWI76_RS02290 at 469.616 kb on - strand, within BWI76_RS02290 at 469.616 kb on - strand, within BWI76_RS02290 at 469.650 kb on - strand, within BWI76_RS02290 at 469.739 kb on + strand, within BWI76_RS02290 at 469.739 kb on + strand, within BWI76_RS02290 at 469.783 kb on + strand, within BWI76_RS02290 at 469.791 kb on - strand, within BWI76_RS02290 at 469.791 kb on - strand, within BWI76_RS02290 at 469.795 kb on + strand, within BWI76_RS02290 at 469.803 kb on - strand, within BWI76_RS02290 at 469.819 kb on + strand, within BWI76_RS02290 at 469.834 kb on - strand, within BWI76_RS02290 at 469.841 kb on - strand, within BWI76_RS02290 at 469.841 kb on - strand, within BWI76_RS02290 at 469.843 kb on - strand, within BWI76_RS02290 at 469.855 kb on + strand, within BWI76_RS02290 at 469.855 kb on + strand, within BWI76_RS02290 at 469.863 kb on - strand at 469.958 kb on - strand, within BWI76_RS02290 at 469.958 kb on - strand, within BWI76_RS02290 at 469.965 kb on + strand, within BWI76_RS02290 at 469.965 kb on + strand, within BWI76_RS02290 at 470.018 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.025 kb on + strand, within BWI76_RS02290 at 470.027 kb on + strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.033 kb on - strand, within BWI76_RS02290 at 470.035 kb on - strand, within BWI76_RS02290 at 470.044 kb on + strand, within BWI76_RS02290 at 470.044 kb on + strand, within BWI76_RS02290 at 470.044 kb on + strand, within BWI76_RS02290 at 470.052 kb on - strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.085 kb on + strand, within BWI76_RS02290 at 470.090 kb on - strand, within BWI76_RS02290 at 470.090 kb on - strand, within BWI76_RS02290 at 470.093 kb on + strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.093 kb on - strand, within BWI76_RS02290 at 470.095 kb on + strand, within BWI76_RS02290 at 470.101 kb on - strand, within BWI76_RS02290 at 470.103 kb on + strand, within BWI76_RS02290 at 470.103 kb on + strand, within BWI76_RS02290 at 470.103 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.110 kb on + strand, within BWI76_RS02290 at 470.111 kb on - strand, within BWI76_RS02290 at 470.111 kb on - strand, within BWI76_RS02290 at 470.113 kb on - strand, within BWI76_RS02290 at 470.118 kb on - strand, within BWI76_RS02290 at 470.118 kb on - strand, within BWI76_RS02290 at 470.125 kb on - strand, within BWI76_RS02290 at 470.125 kb on - strand, within BWI76_RS02290 at 470.154 kb on + strand, within BWI76_RS02290 at 470.158 kb on + strand, within BWI76_RS02290 at 470.167 kb on - strand, within BWI76_RS02290 at 470.184 kb on + strand at 470.184 kb on + strand at 470.184 kb on + strand at 470.184 kb on + strand at 470.184 kb on + strand at 470.186 kb on - strand at 470.190 kb on + strand at 470.192 kb on - strand at 470.192 kb on - strand at 470.192 kb on - strand at 470.256 kb on - strand at 470.258 kb on + strand at 470.296 kb on - strand at 470.307 kb on - strand at 470.336 kb on + strand at 470.336 kb on + strand at 470.343 kb on + strand at 470.344 kb on - strand at 470.344 kb on - strand at 470.346 kb on + strand at 470.389 kb on + strand at 470.390 kb on + strand at 470.395 kb on + strand at 470.403 kb on - strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.405 kb on + strand at 470.407 kb on - strand at 470.408 kb on - strand at 470.413 kb on - strand at 470.419 kb on + strand at 470.419 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Roth35v2 remove 468,144 - -0.3 468,151 - +0.3 468,320 + +0.3 468,351 - BWI76_RS02280 0.10 -0.5 468,483 - BWI76_RS02280 0.33 +2.1 468,504 - BWI76_RS02280 0.36 -0.3 468,592 + BWI76_RS02280 0.51 +1.5 468,616 + BWI76_RS02280 0.55 +1.7 468,661 - BWI76_RS02280 0.63 -1.1 468,714 - BWI76_RS02280 0.72 -1.0 468,729 - BWI76_RS02280 0.74 +4.1 468,770 + BWI76_RS02280 0.81 +2.3 468,798 - BWI76_RS02280 0.86 +0.3 468,806 - BWI76_RS02280 0.88 +1.5 468,808 + BWI76_RS02280 0.88 +0.9 468,811 - BWI76_RS02280 0.88 -0.3 468,831 - -0.1 468,845 - +3.1 468,867 + +0.7 468,867 - +0.9 468,887 + +0.8 468,916 + +1.1 468,916 + +3.5 468,917 + +1.2 468,917 + -1.8 468,917 + +0.1 468,917 + -1.2 468,924 - -0.1 468,924 - -2.3 468,926 + +0.5 468,926 + -0.0 468,934 - -1.1 468,986 - +2.0 468,986 - -2.2 468,988 - +3.1 469,029 - +0.4 469,035 + -0.5 469,053 + +0.7 469,059 + +0.1 469,059 + +2.5 469,059 + +2.2 469,059 + +1.1 469,059 + -0.7 469,059 + +0.4 469,061 - +0.1 469,067 - BWI76_RS02285 0.11 -0.0 469,067 - BWI76_RS02285 0.11 +2.5 469,067 - BWI76_RS02285 0.11 +1.5 469,067 - BWI76_RS02285 0.11 +1.2 469,067 - BWI76_RS02285 0.11 -0.6 469,067 - BWI76_RS02285 0.11 +1.0 469,067 - BWI76_RS02285 0.11 +0.5 469,067 - BWI76_RS02285 0.11 +0.3 469,069 - BWI76_RS02285 0.11 +2.5 469,244 + BWI76_RS02285 0.56 +1.0 469,275 + BWI76_RS02285 0.63 +0.6 469,277 + BWI76_RS02285 0.64 +2.1 469,277 + BWI76_RS02285 0.64 +0.7 469,277 + BWI76_RS02285 0.64 +0.2 469,277 + BWI76_RS02285 0.64 +3.9 469,277 + BWI76_RS02285 0.64 +0.9 469,353 - BWI76_RS02285 0.83 +3.5 469,372 + BWI76_RS02285 0.88 -0.5 469,372 + BWI76_RS02285 0.88 +1.2 469,372 + BWI76_RS02285 0.88 +1.3 469,372 + BWI76_RS02285 0.88 +1.5 469,372 + BWI76_RS02285 0.88 +0.0 469,372 + BWI76_RS02285 0.88 +3.1 469,372 + BWI76_RS02285 0.88 +1.2 469,372 + BWI76_RS02285 0.88 +2.5 469,408 - +1.4 469,411 - -0.5 469,533 + +2.5 469,542 - BWI76_RS02290 0.11 -0.3 469,542 - BWI76_RS02290 0.11 -0.3 469,542 - BWI76_RS02290 0.11 +4.7 469,599 - BWI76_RS02290 0.18 +1.1 469,608 + BWI76_RS02290 0.19 +0.7 469,608 + +1.5 469,608 + BWI76_RS02290 0.19 +1.4 469,608 + +1.5 469,616 - BWI76_RS02290 0.20 +2.3 469,616 - BWI76_RS02290 0.20 +4.9 469,616 - BWI76_RS02290 0.20 +0.2 469,650 - BWI76_RS02290 0.24 -0.6 469,739 + BWI76_RS02290 0.35 +0.5 469,739 + BWI76_RS02290 0.35 -5.5 469,783 + BWI76_RS02290 0.41 +3.9 469,791 - BWI76_RS02290 0.42 +4.3 469,791 - BWI76_RS02290 0.42 +3.1 469,795 + BWI76_RS02290 0.42 +1.5 469,803 - BWI76_RS02290 0.43 -0.5 469,819 + BWI76_RS02290 0.45 -0.9 469,834 - BWI76_RS02290 0.47 +0.5 469,841 - BWI76_RS02290 0.48 +1.5 469,841 - BWI76_RS02290 0.48 +0.8 469,843 - BWI76_RS02290 0.48 +0.3 469,855 + BWI76_RS02290 0.50 +1.0 469,855 + BWI76_RS02290 0.50 +2.3 469,863 - +2.5 469,958 - BWI76_RS02290 0.62 +3.1 469,958 - BWI76_RS02290 0.62 +2.5 469,965 + BWI76_RS02290 0.63 +4.1 469,965 + BWI76_RS02290 0.63 +3.9 470,018 + BWI76_RS02290 0.70 +3.1 470,025 + BWI76_RS02290 0.70 +1.5 470,025 + BWI76_RS02290 0.70 -1.3 470,025 + BWI76_RS02290 0.70 -0.5 470,025 + BWI76_RS02290 0.70 -0.6 470,025 + BWI76_RS02290 0.70 -0.7 470,025 + BWI76_RS02290 0.70 +0.5 470,025 + BWI76_RS02290 0.70 +0.1 470,025 + BWI76_RS02290 0.70 +1.1 470,025 + BWI76_RS02290 0.70 +2.2 470,025 + BWI76_RS02290 0.70 +0.6 470,025 + BWI76_RS02290 0.70 +1.2 470,025 + BWI76_RS02290 0.70 +0.4 470,025 + BWI76_RS02290 0.70 -0.5 470,025 + BWI76_RS02290 0.70 -0.8 470,025 + BWI76_RS02290 0.70 +1.2 470,025 + BWI76_RS02290 0.70 -0.6 470,025 + BWI76_RS02290 0.70 +0.5 470,027 + BWI76_RS02290 0.71 -1.7 470,033 - BWI76_RS02290 0.71 +1.8 470,033 - BWI76_RS02290 0.71 +3.1 470,033 - BWI76_RS02290 0.71 +2.5 470,033 - BWI76_RS02290 0.71 -2.5 470,033 - BWI76_RS02290 0.71 -1.9 470,033 - BWI76_RS02290 0.71 -1.4 470,033 - BWI76_RS02290 0.71 +0.5 470,033 - BWI76_RS02290 0.71 +0.1 470,033 - BWI76_RS02290 0.71 +1.5 470,033 - BWI76_RS02290 0.71 +1.0 470,033 - BWI76_RS02290 0.71 +0.1 470,033 - BWI76_RS02290 0.71 +4.1 470,033 - BWI76_RS02290 0.71 +0.8 470,035 - BWI76_RS02290 0.72 +0.2 470,044 + BWI76_RS02290 0.73 -0.6 470,044 + BWI76_RS02290 0.73 +0.5 470,044 + BWI76_RS02290 0.73 +3.1 470,052 - BWI76_RS02290 0.74 +3.1 470,085 + BWI76_RS02290 0.78 +3.1 470,085 + BWI76_RS02290 0.78 +0.8 470,085 + BWI76_RS02290 0.78 -0.1 470,085 + BWI76_RS02290 0.78 -1.2 470,085 + BWI76_RS02290 0.78 -0.2 470,085 + BWI76_RS02290 0.78 -1.1 470,085 + BWI76_RS02290 0.78 -0.4 470,085 + BWI76_RS02290 0.78 +0.7 470,090 - BWI76_RS02290 0.79 -0.7 470,090 - BWI76_RS02290 0.79 +1.0 470,093 + BWI76_RS02290 0.79 -0.5 470,093 - BWI76_RS02290 0.79 +4.7 470,093 - BWI76_RS02290 0.79 +1.1 470,093 - BWI76_RS02290 0.79 +0.9 470,093 - BWI76_RS02290 0.79 +1.9 470,093 - BWI76_RS02290 0.79 -0.9 470,093 - BWI76_RS02290 0.79 +0.4 470,093 - BWI76_RS02290 0.79 +1.4 470,093 - BWI76_RS02290 0.79 +0.9 470,093 - BWI76_RS02290 0.79 +0.3 470,095 + BWI76_RS02290 0.79 +1.0 470,101 - BWI76_RS02290 0.80 +3.2 470,103 + BWI76_RS02290 0.80 -0.2 470,103 + BWI76_RS02290 0.80 +2.1 470,103 + BWI76_RS02290 0.80 +1.0 470,110 + BWI76_RS02290 0.81 +0.8 470,110 + BWI76_RS02290 0.81 +0.8 470,110 + BWI76_RS02290 0.81 -0.3 470,110 + BWI76_RS02290 0.81 -0.4 470,110 + BWI76_RS02290 0.81 +0.6 470,110 + BWI76_RS02290 0.81 +3.5 470,111 - BWI76_RS02290 0.81 +3.9 470,111 - BWI76_RS02290 0.81 -1.8 470,113 - BWI76_RS02290 0.81 -1.8 470,118 - BWI76_RS02290 0.82 +2.8 470,118 - BWI76_RS02290 0.82 +1.3 470,125 - BWI76_RS02290 0.83 +0.2 470,125 - BWI76_RS02290 0.83 +0.4 470,154 + BWI76_RS02290 0.86 +0.8 470,158 + BWI76_RS02290 0.87 +1.4 470,167 - BWI76_RS02290 0.88 +1.5 470,184 + +1.4 470,184 + +1.4 470,184 + +1.0 470,184 + +1.1 470,184 + +1.1 470,186 - +1.9 470,190 + +2.0 470,192 - +1.5 470,192 - -0.1 470,192 - +2.0 470,256 - +3.5 470,258 + +0.5 470,296 - +0.9 470,307 - +2.8 470,336 + +3.1 470,336 + +0.5 470,343 + +2.5 470,344 - -1.5 470,344 - +0.0 470,346 + -0.3 470,389 + +1.1 470,390 + +3.5 470,395 + +1.5 470,403 - +0.8 470,405 + +1.9 470,405 + -2.6 470,405 + +0.1 470,405 + +3.1 470,405 + +1.5 470,405 + +1.4 470,405 + -0.2 470,407 - +0.3 470,408 - +0.5 470,413 - +1.7 470,419 + +3.9 470,419 + -1.5
Or see this region's nucleotide sequence