Experiment: KP4_E4_R2_1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS19425 and BWI76_RS19430 are separated by 141 nucleotides BWI76_RS19430 and BWI76_RS19435 are separated by 14 nucleotides
BWI76_RS19425: BWI76_RS19425 - methionine--tRNA ligase, at 4,051,535 to 4,053,568
_RS19425
BWI76_RS19430: BWI76_RS19430 - MolR family transcriptional regulator, at 4,053,710 to 4,057,426
_RS19430
BWI76_RS19435: BWI76_RS19435 - hypothetical protein, at 4,057,441 to 4,061,037
_RS19435
Position (kb)
4053
4054
4055
4056
4057
4058 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 4053.983 kb on + strand at 4053.991 kb on - strand at 4054.021 kb on + strand at 4054.047 kb on - strand at 4054.276 kb on + strand, within BWI76_RS19430 at 4054.415 kb on + strand, within BWI76_RS19430 at 4054.425 kb on - strand, within BWI76_RS19430 at 4054.434 kb on + strand, within BWI76_RS19430 at 4054.442 kb on - strand, within BWI76_RS19430 at 4054.693 kb on - strand, within BWI76_RS19430 at 4055.225 kb on - strand, within BWI76_RS19430 at 4055.312 kb on - strand, within BWI76_RS19430 at 4055.359 kb on - strand, within BWI76_RS19430 at 4055.519 kb on + strand, within BWI76_RS19430 at 4055.807 kb on + strand, within BWI76_RS19430 at 4055.815 kb on - strand, within BWI76_RS19430 at 4056.156 kb on + strand, within BWI76_RS19430 at 4056.207 kb on + strand, within BWI76_RS19430 at 4057.179 kb on + strand at 4057.272 kb on + strand at 4057.372 kb on + strand at 4057.578 kb on - strand at 4057.760 kb on + strand at 4057.768 kb on - strand at 4057.788 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KP4_E4_R2_1 remove 4,053,983 + +1.0 4,053,991 - +0.2 4,054,021 + +0.4 4,054,047 - +0.1 4,054,276 + BWI76_RS19430 0.15 -0.5 4,054,415 + BWI76_RS19430 0.19 -1.7 4,054,425 - BWI76_RS19430 0.19 -0.4 4,054,434 + BWI76_RS19430 0.19 +0.6 4,054,442 - BWI76_RS19430 0.20 -1.1 4,054,693 - BWI76_RS19430 0.26 -1.6 4,055,225 - BWI76_RS19430 0.41 +0.4 4,055,312 - BWI76_RS19430 0.43 -0.2 4,055,359 - BWI76_RS19430 0.44 -0.8 4,055,519 + BWI76_RS19430 0.49 -0.8 4,055,807 + BWI76_RS19430 0.56 +1.4 4,055,815 - BWI76_RS19430 0.57 -1.3 4,056,156 + BWI76_RS19430 0.66 -3.9 4,056,207 + BWI76_RS19430 0.67 -2.8 4,057,179 + +1.4 4,057,272 + +0.2 4,057,372 + -0.2 4,057,578 - -1.7 4,057,760 + -1.0 4,057,768 - -1.9 4,057,788 + +0.4
Or see this region's nucleotide sequence