Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11575

Experiment: KP4_E4_R2_1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11570 and BWI76_RS11575 are separated by 130 nucleotidesBWI76_RS11575 and BWI76_RS11580 are separated by 10 nucleotides BWI76_RS11570: BWI76_RS11570 - MFS transporter, at 2,434,019 to 2,435,374 _RS11570 BWI76_RS11575: BWI76_RS11575 - nicotinamidase/pyrazinamidase, at 2,435,505 to 2,436,146 _RS11575 BWI76_RS11580: BWI76_RS11580 - L-asparaginase 1, at 2,436,157 to 2,437,173 _RS11580 Position (kb) 2435 2436 2437Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2434.515 kb on + strand, within BWI76_RS11570at 2434.579 kb on + strand, within BWI76_RS11570at 2434.584 kb on - strand, within BWI76_RS11570at 2434.744 kb on + strand, within BWI76_RS11570at 2434.811 kb on - strand, within BWI76_RS11570at 2434.815 kb on + strand, within BWI76_RS11570at 2435.139 kb on + strand, within BWI76_RS11570at 2435.714 kb on + strand, within BWI76_RS11575at 2435.877 kb on + strand, within BWI76_RS11575at 2435.917 kb on - strandat 2435.947 kb on + strand, within BWI76_RS11575at 2435.955 kb on - strand, within BWI76_RS11575at 2436.064 kb on + strand, within BWI76_RS11575at 2436.071 kb on - strand, within BWI76_RS11575at 2436.375 kb on + strand, within BWI76_RS11580at 2436.931 kb on - strand, within BWI76_RS11580

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Per-strain Table

Position Strand Gene LocusTag Fraction KP4_E4_R2_1
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2,434,515 + BWI76_RS11570 0.37 -1.8
2,434,579 + BWI76_RS11570 0.41 -1.9
2,434,584 - BWI76_RS11570 0.42 +2.5
2,434,744 + BWI76_RS11570 0.53 +1.2
2,434,811 - BWI76_RS11570 0.58 +3.9
2,434,815 + BWI76_RS11570 0.59 +0.1
2,435,139 + BWI76_RS11570 0.83 +1.7
2,435,714 + BWI76_RS11575 0.33 +0.6
2,435,877 + BWI76_RS11575 0.58 +1.0
2,435,917 - +1.3
2,435,947 + BWI76_RS11575 0.69 -2.3
2,435,955 - BWI76_RS11575 0.70 +0.3
2,436,064 + BWI76_RS11575 0.87 +0.0
2,436,071 - BWI76_RS11575 0.88 +1.9
2,436,375 + BWI76_RS11580 0.21 +0.6
2,436,931 - BWI76_RS11580 0.76 +0.9

Or see this region's nucleotide sequence