Experiment: MM10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18380 and BWI76_RS18385 are separated by 41 nucleotides BWI76_RS18385 and BWI76_RS18390 are separated by 132 nucleotides BWI76_RS18390 and BWI76_RS18395 are separated by 329 nucleotides BWI76_RS18395 and BWI76_RS18400 are separated by 107 nucleotides BWI76_RS18400 and BWI76_RS18405 are separated by 75 nucleotides
BWI76_RS18380: BWI76_RS18380 - helix-turn-helix transcriptional regulator, at 3,815,749 to 3,816,372
_RS18380
BWI76_RS18385: BWI76_RS18385 - hypothetical protein, at 3,816,414 to 3,816,602
_RS18385
BWI76_RS18390: BWI76_RS18390 - hypothetical protein, at 3,816,735 to 3,816,950
_RS18390
BWI76_RS18395: BWI76_RS18395 - diguanylate cyclase, at 3,817,280 to 3,818,947
_RS18395
BWI76_RS18400: BWI76_RS18400 - DUF2158 domain-containing protein, at 3,819,055 to 3,819,234
_RS18400
BWI76_RS18405: BWI76_RS18405 - hypothetical protein, at 3,819,310 to 3,820,221
_RS18405
Position (kb)
3817
3818
3819 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 3816.320 kb on + strand at 3816.320 kb on + strand at 3816.320 kb on + strand at 3816.320 kb on + strand at 3816.320 kb on + strand at 3816.320 kb on + strand at 3816.320 kb on + strand at 3816.328 kb on - strand at 3816.328 kb on - strand at 3816.328 kb on - strand at 3816.363 kb on + strand at 3816.366 kb on + strand at 3816.515 kb on - strand, within BWI76_RS18385 at 3816.637 kb on - strand at 3816.637 kb on - strand at 3816.637 kb on - strand at 3816.637 kb on - strand at 3816.648 kb on + strand at 3816.648 kb on + strand at 3816.656 kb on - strand at 3816.722 kb on - strand at 3816.777 kb on - strand, within BWI76_RS18390 at 3816.864 kb on - strand, within BWI76_RS18390 at 3816.954 kb on - strand at 3817.152 kb on + strand at 3817.160 kb on - strand at 3817.285 kb on + strand at 3817.293 kb on - strand at 3817.298 kb on - strand at 3817.313 kb on - strand at 3817.325 kb on + strand at 3817.514 kb on - strand, within BWI76_RS18395 at 3817.514 kb on - strand, within BWI76_RS18395 at 3817.733 kb on - strand, within BWI76_RS18395 at 3817.735 kb on - strand, within BWI76_RS18395 at 3818.076 kb on + strand, within BWI76_RS18395 at 3818.223 kb on - strand, within BWI76_RS18395 at 3818.316 kb on + strand, within BWI76_RS18395 at 3818.324 kb on - strand, within BWI76_RS18395 at 3818.508 kb on + strand, within BWI76_RS18395 at 3818.672 kb on - strand, within BWI76_RS18395 at 3818.672 kb on - strand, within BWI76_RS18395 at 3818.808 kb on - strand at 3819.140 kb on - strand, within BWI76_RS18400 at 3819.409 kb on - strand, within BWI76_RS18405 at 3819.476 kb on - strand, within BWI76_RS18405 at 3819.476 kb on - strand, within BWI76_RS18405 at 3819.476 kb on - strand, within BWI76_RS18405 at 3819.783 kb on + strand, within BWI76_RS18405
Per-strain Table
Position Strand Gene LocusTag Fraction MM10 remove 3,816,320 + -2.6 3,816,320 + -0.4 3,816,320 + -1.0 3,816,320 + -0.5 3,816,320 + -0.9 3,816,320 + +0.3 3,816,320 + -2.0 3,816,328 - -0.9 3,816,328 - +3.1 3,816,328 - +0.7 3,816,363 + -0.6 3,816,366 + +0.3 3,816,515 - BWI76_RS18385 0.53 -0.8 3,816,637 - -0.7 3,816,637 - +1.1 3,816,637 - +0.3 3,816,637 - +2.1 3,816,648 + -0.9 3,816,648 + -0.8 3,816,656 - +0.4 3,816,722 - -0.6 3,816,777 - BWI76_RS18390 0.19 -0.4 3,816,864 - BWI76_RS18390 0.60 +0.9 3,816,954 - -2.3 3,817,152 + +0.5 3,817,160 - -0.2 3,817,285 + +0.2 3,817,293 - -1.5 3,817,298 - -0.7 3,817,313 - -0.5 3,817,325 + +0.6 3,817,514 - BWI76_RS18395 0.14 -0.4 3,817,514 - BWI76_RS18395 0.14 -0.2 3,817,733 - BWI76_RS18395 0.27 -0.7 3,817,735 - BWI76_RS18395 0.27 -1.3 3,818,076 + BWI76_RS18395 0.48 +0.9 3,818,223 - BWI76_RS18395 0.57 -2.0 3,818,316 + BWI76_RS18395 0.62 -0.6 3,818,324 - BWI76_RS18395 0.63 -0.4 3,818,508 + BWI76_RS18395 0.74 -1.0 3,818,672 - BWI76_RS18395 0.83 +0.9 3,818,672 - BWI76_RS18395 0.83 -2.5 3,818,808 - -3.3 3,819,140 - BWI76_RS18400 0.47 -1.0 3,819,409 - BWI76_RS18405 0.11 -0.4 3,819,476 - BWI76_RS18405 0.18 +0.1 3,819,476 - BWI76_RS18405 0.18 -1.9 3,819,476 - BWI76_RS18405 0.18 +0.5 3,819,783 + BWI76_RS18405 0.52 -0.1
Or see this region's nucleotide sequence