Experiment: MM10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17680 and BWI76_RS17685 are separated by 294 nucleotides BWI76_RS17685 and BWI76_RS17690 are separated by 83 nucleotides
BWI76_RS17680: BWI76_RS17680 - hypothetical protein, at 3,671,995 to 3,673,434
_RS17680
BWI76_RS17685: BWI76_RS17685 - beta-glucosidase, at 3,673,729 to 3,676,509
_RS17685
BWI76_RS17690: BWI76_RS17690 - putative glycoporin, at 3,676,593 to 3,677,984
_RS17690
Position (kb)
3673
3674
3675
3676
3677 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3672.745 kb on + strand, within BWI76_RS17680 at 3672.843 kb on + strand, within BWI76_RS17680 at 3672.843 kb on + strand, within BWI76_RS17680 at 3672.848 kb on + strand, within BWI76_RS17680 at 3672.856 kb on - strand, within BWI76_RS17680 at 3673.262 kb on - strand, within BWI76_RS17680 at 3673.508 kb on - strand at 3673.531 kb on - strand at 3673.655 kb on - strand at 3673.679 kb on - strand at 3673.985 kb on - strand at 3674.050 kb on - strand, within BWI76_RS17685 at 3674.050 kb on - strand, within BWI76_RS17685 at 3674.100 kb on + strand, within BWI76_RS17685 at 3674.166 kb on + strand, within BWI76_RS17685 at 3674.217 kb on - strand, within BWI76_RS17685 at 3674.374 kb on + strand, within BWI76_RS17685 at 3674.391 kb on + strand, within BWI76_RS17685 at 3674.442 kb on + strand, within BWI76_RS17685 at 3674.498 kb on - strand, within BWI76_RS17685 at 3675.052 kb on + strand, within BWI76_RS17685 at 3675.052 kb on + strand, within BWI76_RS17685 at 3675.080 kb on - strand, within BWI76_RS17685 at 3675.254 kb on - strand, within BWI76_RS17685 at 3675.459 kb on - strand, within BWI76_RS17685 at 3675.560 kb on - strand, within BWI76_RS17685 at 3675.627 kb on - strand, within BWI76_RS17685 at 3675.839 kb on + strand, within BWI76_RS17685 at 3675.893 kb on + strand, within BWI76_RS17685 at 3675.893 kb on + strand, within BWI76_RS17685 at 3676.066 kb on + strand, within BWI76_RS17685 at 3676.066 kb on + strand, within BWI76_RS17685 at 3676.254 kb on + strand at 3676.397 kb on - strand at 3676.867 kb on - strand, within BWI76_RS17690 at 3676.945 kb on - strand, within BWI76_RS17690 at 3677.022 kb on - strand, within BWI76_RS17690 at 3677.196 kb on - strand, within BWI76_RS17690 at 3677.241 kb on - strand, within BWI76_RS17690 at 3677.390 kb on - strand, within BWI76_RS17690 at 3677.412 kb on - strand, within BWI76_RS17690 at 3677.457 kb on - strand, within BWI76_RS17690
Per-strain Table
Position Strand Gene LocusTag Fraction MM10 remove 3,672,745 + BWI76_RS17680 0.52 +1.6 3,672,843 + BWI76_RS17680 0.59 +0.9 3,672,843 + BWI76_RS17680 0.59 -1.6 3,672,848 + BWI76_RS17680 0.59 +0.0 3,672,856 - BWI76_RS17680 0.60 -1.4 3,673,262 - BWI76_RS17680 0.88 +0.3 3,673,508 - -0.5 3,673,531 - +0.1 3,673,655 - +0.3 3,673,679 - +0.0 3,673,985 - +2.1 3,674,050 - BWI76_RS17685 0.12 -0.6 3,674,050 - BWI76_RS17685 0.12 +0.4 3,674,100 + BWI76_RS17685 0.13 -1.5 3,674,166 + BWI76_RS17685 0.16 -0.2 3,674,217 - BWI76_RS17685 0.18 -1.4 3,674,374 + BWI76_RS17685 0.23 -0.5 3,674,391 + BWI76_RS17685 0.24 -1.6 3,674,442 + BWI76_RS17685 0.26 -2.2 3,674,498 - BWI76_RS17685 0.28 +1.1 3,675,052 + BWI76_RS17685 0.48 -0.3 3,675,052 + BWI76_RS17685 0.48 -0.0 3,675,080 - BWI76_RS17685 0.49 +0.1 3,675,254 - BWI76_RS17685 0.55 -0.7 3,675,459 - BWI76_RS17685 0.62 -0.2 3,675,560 - BWI76_RS17685 0.66 +0.3 3,675,627 - BWI76_RS17685 0.68 -0.8 3,675,839 + BWI76_RS17685 0.76 +0.0 3,675,893 + BWI76_RS17685 0.78 +0.7 3,675,893 + BWI76_RS17685 0.78 -0.6 3,676,066 + BWI76_RS17685 0.84 -0.7 3,676,066 + BWI76_RS17685 0.84 -2.0 3,676,254 + -1.1 3,676,397 - -1.2 3,676,867 - BWI76_RS17690 0.20 -0.7 3,676,945 - BWI76_RS17690 0.25 -0.2 3,677,022 - BWI76_RS17690 0.31 +1.1 3,677,196 - BWI76_RS17690 0.43 +0.7 3,677,241 - BWI76_RS17690 0.47 -0.0 3,677,390 - BWI76_RS17690 0.57 +0.3 3,677,412 - BWI76_RS17690 0.59 +0.4 3,677,457 - BWI76_RS17690 0.62 -0.3
Or see this region's nucleotide sequence