Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS03300 and ABCV34_RS03305 are separated by 4 nucleotides ABCV34_RS03305 and ABCV34_RS03310 are separated by 19 nucleotides ABCV34_RS03310 and ABCV34_RS03315 are separated by 432 nucleotides
ABCV34_RS03300: ABCV34_RS03300 - StbB family protein, at 732,816 to 733,523
_RS03300
ABCV34_RS03305: ABCV34_RS03305 - hypothetical protein, at 733,528 to 734,010
_RS03305
ABCV34_RS03310: ABCV34_RS03310 - hypothetical protein, at 734,030 to 734,500
_RS03310
ABCV34_RS03315: ABCV34_RS03315 - TrfA, at 734,933 to 735,853
_RS03315
Position (kb) 734
735 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 733.104 kb on + strand, within ABCV34_RS03300 at 733.104 kb on + strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.105 kb on - strand, within ABCV34_RS03300 at 733.372 kb on - strand, within ABCV34_RS03300 at 733.372 kb on - strand, within ABCV34_RS03300 at 733.501 kb on + strand at 733.501 kb on + strand at 733.502 kb on - strand at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.636 kb on + strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.637 kb on - strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.811 kb on + strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 733.812 kb on - strand, within ABCV34_RS03305 at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.039 kb on + strand at 734.040 kb on - strand at 734.040 kb on - strand at 734.040 kb on - strand at 734.040 kb on - strand at 734.107 kb on - strand, within ABCV34_RS03310 at 734.202 kb on + strand, within ABCV34_RS03310 at 734.202 kb on + strand, within ABCV34_RS03310 at 734.344 kb on + strand, within ABCV34_RS03310 at 734.349 kb on + strand, within ABCV34_RS03310 at 734.349 kb on + strand, within ABCV34_RS03310 at 734.349 kb on + strand, within ABCV34_RS03310 at 734.350 kb on - strand, within ABCV34_RS03310 at 734.350 kb on - strand, within ABCV34_RS03310 at 734.350 kb on - strand, within ABCV34_RS03310 at 734.696 kb on - strand at 734.701 kb on + strand at 734.702 kb on - strand at 734.706 kb on + strand at 734.706 kb on + strand at 734.707 kb on - strand at 734.707 kb on - strand at 734.707 kb on - strand at 734.707 kb on - strand at 734.707 kb on - strand at 734.717 kb on + strand at 734.717 kb on + strand at 734.717 kb on + strand at 734.718 kb on - strand at 734.718 kb on - strand at 734.784 kb on + strand at 734.784 kb on + strand at 734.784 kb on + strand at 734.784 kb on + strand at 734.784 kb on + strand at 734.785 kb on - strand at 734.785 kb on - strand at 734.785 kb on - strand at 734.788 kb on - strand at 734.806 kb on + strand at 734.806 kb on + strand at 734.806 kb on + strand at 734.806 kb on + strand at 734.806 kb on + strand at 734.807 kb on - strand at 734.807 kb on - strand at 734.807 kb on - strand at 734.827 kb on + strand at 734.827 kb on + strand at 734.827 kb on + strand at 734.827 kb on + strand at 734.827 kb on + strand at 734.827 kb on + strand at 734.828 kb on - strand at 734.828 kb on - strand at 734.828 kb on - strand at 734.828 kb on - strand at 734.828 kb on - strand at 734.828 kb on - strand at 734.828 kb on - strand at 734.828 kb on - strand at 734.830 kb on + strand at 734.831 kb on - strand at 734.849 kb on + strand at 734.849 kb on + strand at 734.849 kb on + strand at 734.849 kb on + strand at 734.849 kb on + strand at 734.850 kb on - strand at 734.850 kb on - strand at 734.850 kb on - strand at 734.852 kb on + strand at 734.852 kb on + strand at 734.852 kb on + strand at 734.852 kb on + strand at 734.852 kb on + strand at 734.852 kb on + strand at 734.852 kb on + strand at 734.853 kb on - strand at 734.853 kb on - strand at 734.853 kb on - strand at 734.931 kb on + strand at 734.931 kb on + strand at 734.932 kb on - strand at 734.932 kb on - strand at 734.932 kb on - strand at 734.932 kb on - strand at 734.934 kb on + strand at 734.934 kb on + strand at 734.934 kb on + strand at 734.935 kb on - strand at 734.935 kb on - strand at 734.935 kb on - strand at 734.953 kb on + strand at 734.954 kb on - strand at 735.130 kb on + strand, within ABCV34_RS03315 at 735.216 kb on + strand, within ABCV34_RS03315 at 735.216 kb on + strand, within ABCV34_RS03315 at 735.216 kb on + strand, within ABCV34_RS03315 at 735.216 kb on + strand, within ABCV34_RS03315 at 735.216 kb on + strand, within ABCV34_RS03315 at 735.216 kb on + strand, within ABCV34_RS03315 at 735.217 kb on - strand, within ABCV34_RS03315 at 735.217 kb on - strand, within ABCV34_RS03315 at 735.217 kb on - strand, within ABCV34_RS03315 at 735.267 kb on + strand, within ABCV34_RS03315 at 735.267 kb on + strand, within ABCV34_RS03315 at 735.267 kb on + strand, within ABCV34_RS03315 at 735.267 kb on + strand, within ABCV34_RS03315 at 735.268 kb on - strand, within ABCV34_RS03315 at 735.268 kb on - strand, within ABCV34_RS03315 at 735.339 kb on + strand, within ABCV34_RS03315 at 735.339 kb on + strand, within ABCV34_RS03315 at 735.340 kb on - strand, within ABCV34_RS03315 at 735.364 kb on + strand, within ABCV34_RS03315 at 735.364 kb on + strand, within ABCV34_RS03315 at 735.364 kb on + strand, within ABCV34_RS03315 at 735.364 kb on + strand, within ABCV34_RS03315 at 735.365 kb on - strand, within ABCV34_RS03315 at 735.365 kb on - strand, within ABCV34_RS03315 at 735.382 kb on + strand, within ABCV34_RS03315 at 735.423 kb on + strand, within ABCV34_RS03315 at 735.424 kb on - strand, within ABCV34_RS03315 at 735.424 kb on - strand, within ABCV34_RS03315 at 735.439 kb on + strand, within ABCV34_RS03315 at 735.439 kb on + strand, within ABCV34_RS03315 at 735.440 kb on - strand, within ABCV34_RS03315 at 735.440 kb on - strand, within ABCV34_RS03315 at 735.440 kb on - strand, within ABCV34_RS03315
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 733,104 + ABCV34_RS03300 0.41 -1.1 733,104 + ABCV34_RS03300 0.41 -2.8 733,105 - ABCV34_RS03300 0.41 -1.7 733,105 - ABCV34_RS03300 0.41 -0.6 733,105 - ABCV34_RS03300 0.41 -4.1 733,105 - ABCV34_RS03300 0.41 -3.3 733,372 - ABCV34_RS03300 0.79 -3.4 733,372 - ABCV34_RS03300 0.79 -2.4 733,501 + -1.4 733,501 + +2.5 733,502 - +0.0 733,636 + ABCV34_RS03305 0.22 -2.2 733,636 + ABCV34_RS03305 0.22 -3.2 733,636 + ABCV34_RS03305 0.22 -3.7 733,636 + ABCV34_RS03305 0.22 -2.6 733,636 + ABCV34_RS03305 0.22 -1.8 733,636 + ABCV34_RS03305 0.22 +1.1 733,636 + ABCV34_RS03305 0.22 -2.0 733,636 + ABCV34_RS03305 0.22 -2.6 733,636 + ABCV34_RS03305 0.22 -1.4 733,636 + ABCV34_RS03305 0.22 -2.0 733,637 - ABCV34_RS03305 0.23 -0.4 733,637 - ABCV34_RS03305 0.23 +0.3 733,637 - ABCV34_RS03305 0.23 +0.2 733,637 - ABCV34_RS03305 0.23 -1.9 733,637 - ABCV34_RS03305 0.23 -0.6 733,637 - ABCV34_RS03305 0.23 +2.4 733,811 + ABCV34_RS03305 0.59 -0.3 733,811 + ABCV34_RS03305 0.59 -3.4 733,811 + ABCV34_RS03305 0.59 -2.7 733,811 + ABCV34_RS03305 0.59 -0.9 733,811 + ABCV34_RS03305 0.59 -2.2 733,811 + ABCV34_RS03305 0.59 -0.1 733,811 + ABCV34_RS03305 0.59 -1.4 733,811 + ABCV34_RS03305 0.59 -1.9 733,811 + ABCV34_RS03305 0.59 -3.3 733,811 + ABCV34_RS03305 0.59 -1.6 733,811 + ABCV34_RS03305 0.59 -2.7 733,811 + ABCV34_RS03305 0.59 -1.9 733,811 + ABCV34_RS03305 0.59 -3.3 733,811 + ABCV34_RS03305 0.59 +0.1 733,811 + ABCV34_RS03305 0.59 -2.1 733,812 - ABCV34_RS03305 0.59 -1.9 733,812 - ABCV34_RS03305 0.59 -2.0 733,812 - ABCV34_RS03305 0.59 -2.6 733,812 - ABCV34_RS03305 0.59 +1.2 733,812 - ABCV34_RS03305 0.59 +1.7 733,812 - ABCV34_RS03305 0.59 -0.5 733,812 - ABCV34_RS03305 0.59 -0.9 733,812 - ABCV34_RS03305 0.59 -0.9 733,812 - ABCV34_RS03305 0.59 -1.2 733,812 - ABCV34_RS03305 0.59 -0.5 733,812 - ABCV34_RS03305 0.59 -3.4 733,812 - ABCV34_RS03305 0.59 -1.2 734,039 + -0.5 734,039 + -0.4 734,039 + +0.9 734,039 + -4.0 734,039 + -1.1 734,039 + +1.6 734,040 - -1.7 734,040 - -1.7 734,040 - +0.1 734,040 - -1.4 734,107 - ABCV34_RS03310 0.16 -3.1 734,202 + ABCV34_RS03310 0.37 -0.4 734,202 + ABCV34_RS03310 0.37 +1.1 734,344 + ABCV34_RS03310 0.67 -0.6 734,349 + ABCV34_RS03310 0.68 -0.5 734,349 + ABCV34_RS03310 0.68 -1.7 734,349 + ABCV34_RS03310 0.68 -0.5 734,350 - ABCV34_RS03310 0.68 +3.4 734,350 - ABCV34_RS03310 0.68 +1.3 734,350 - ABCV34_RS03310 0.68 -2.0 734,696 - -2.8 734,701 + +1.2 734,702 - -1.1 734,706 + -1.2 734,706 + -0.6 734,707 - -0.2 734,707 - -0.9 734,707 - -0.2 734,707 - -1.9 734,707 - +1.1 734,717 + -4.7 734,717 + -1.2 734,717 + -3.1 734,718 - -2.8 734,718 - -2.2 734,784 + +0.8 734,784 + -2.9 734,784 + -1.0 734,784 + -0.9 734,784 + -0.2 734,785 - -4.2 734,785 - -2.6 734,785 - -2.3 734,788 - -1.9 734,806 + +0.1 734,806 + -2.2 734,806 + -3.4 734,806 + -4.2 734,806 + -4.8 734,807 - -3.4 734,807 - -1.8 734,807 - -0.2 734,827 + -1.2 734,827 + -5.1 734,827 + -3.5 734,827 + +0.2 734,827 + -0.8 734,827 + -0.5 734,828 - +1.3 734,828 - +0.5 734,828 - -0.6 734,828 - -1.8 734,828 - -2.4 734,828 - -1.4 734,828 - -1.8 734,828 - -2.3 734,830 + -2.4 734,831 - -4.1 734,849 + -1.2 734,849 + -0.7 734,849 + +3.2 734,849 + -1.5 734,849 + -1.7 734,850 - -2.5 734,850 - -1.7 734,850 - -2.0 734,852 + -2.2 734,852 + -0.0 734,852 + -2.2 734,852 + -0.2 734,852 + +2.1 734,852 + -2.4 734,852 + -2.2 734,853 - -3.1 734,853 - -2.1 734,853 - +0.8 734,931 + -2.4 734,931 + +1.3 734,932 - -2.7 734,932 - -1.1 734,932 - -0.8 734,932 - -1.5 734,934 + -1.2 734,934 + -0.9 734,934 + -0.9 734,935 - -3.7 734,935 - -0.7 734,935 - +1.0 734,953 + +0.7 734,954 - -2.3 735,130 + ABCV34_RS03315 0.21 -0.4 735,216 + ABCV34_RS03315 0.31 -2.7 735,216 + ABCV34_RS03315 0.31 -2.6 735,216 + ABCV34_RS03315 0.31 -0.8 735,216 + ABCV34_RS03315 0.31 -0.9 735,216 + ABCV34_RS03315 0.31 +1.1 735,216 + ABCV34_RS03315 0.31 -3.6 735,217 - ABCV34_RS03315 0.31 -1.4 735,217 - ABCV34_RS03315 0.31 -1.9 735,217 - ABCV34_RS03315 0.31 -0.4 735,267 + ABCV34_RS03315 0.36 -0.1 735,267 + ABCV34_RS03315 0.36 +1.3 735,267 + ABCV34_RS03315 0.36 +1.2 735,267 + ABCV34_RS03315 0.36 -1.7 735,268 - ABCV34_RS03315 0.36 +1.4 735,268 - ABCV34_RS03315 0.36 -3.6 735,339 + ABCV34_RS03315 0.44 -1.9 735,339 + ABCV34_RS03315 0.44 -1.9 735,340 - ABCV34_RS03315 0.44 +1.1 735,364 + ABCV34_RS03315 0.47 -0.2 735,364 + ABCV34_RS03315 0.47 -3.4 735,364 + ABCV34_RS03315 0.47 +0.4 735,364 + ABCV34_RS03315 0.47 +0.3 735,365 - ABCV34_RS03315 0.47 -1.7 735,365 - ABCV34_RS03315 0.47 +0.1 735,382 + ABCV34_RS03315 0.49 +0.5 735,423 + ABCV34_RS03315 0.53 -1.6 735,424 - ABCV34_RS03315 0.53 -3.1 735,424 - ABCV34_RS03315 0.53 -3.2 735,439 + ABCV34_RS03315 0.55 -3.3 735,439 + ABCV34_RS03315 0.55 -0.8 735,440 - ABCV34_RS03315 0.55 -1.9 735,440 - ABCV34_RS03315 0.55 -0.9 735,440 - ABCV34_RS03315 0.55 +1.4
Or see this region's nucleotide sequence