Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS15810 and ABCV34_RS15815 are separated by 160 nucleotides ABCV34_RS15815 and ABCV34_RS15820 are separated by 54 nucleotides ABCV34_RS15820 and ABCV34_RS15825 are separated by 82 nucleotides ABCV34_RS15825 and ABCV34_RS15830 are separated by 7 nucleotides
ABCV34_RS15810: ABCV34_RS15810 - tRNA-His, at 3,342,705 to 3,342,780
_RS15810
ABCV34_RS15815: ABCV34_RS15815 - L-threonylcarbamoyladenylate synthase, at 3,342,941 to 3,343,567
_RS15815
ABCV34_RS15820: ABCV34_RS15820 - site-2 protease family protein, at 3,343,622 to 3,344,275
_RS15820
ABCV34_RS15825: ABCV34_RS15825 - 4-hydroxy-tetrahydrodipicolinate synthase, at 3,344,358 to 3,345,260
_RS15825
ABCV34_RS15830: ABCV34_RS15830 - outer membrane protein assembly factor BamC, at 3,345,268 to 3,346,395
_RS15830
Position (kb) 3343
3344
3345 Strain fitness (log2 ratio) -2
-1
0
1 at 3342.624 kb on + strand at 3342.625 kb on - strand at 3342.625 kb on - strand at 3343.052 kb on + strand, within ABCV34_RS15815 at 3343.052 kb on + strand, within ABCV34_RS15815 at 3343.052 kb on + strand, within ABCV34_RS15815 at 3343.052 kb on + strand, within ABCV34_RS15815 at 3343.053 kb on - strand, within ABCV34_RS15815 at 3343.053 kb on - strand, within ABCV34_RS15815 at 3343.053 kb on - strand, within ABCV34_RS15815 at 3343.053 kb on - strand, within ABCV34_RS15815 at 3343.053 kb on - strand, within ABCV34_RS15815 at 3343.053 kb on - strand, within ABCV34_RS15815 at 3343.431 kb on - strand, within ABCV34_RS15815 at 3343.652 kb on + strand at 3343.652 kb on + strand at 3343.652 kb on + strand at 3343.653 kb on - strand at 3343.653 kb on - strand at 3343.703 kb on + strand, within ABCV34_RS15820 at 3343.703 kb on + strand, within ABCV34_RS15820 at 3343.703 kb on + strand, within ABCV34_RS15820 at 3343.703 kb on + strand, within ABCV34_RS15820 at 3343.703 kb on + strand, within ABCV34_RS15820 at 3343.704 kb on - strand, within ABCV34_RS15820 at 3343.704 kb on - strand, within ABCV34_RS15820 at 3343.704 kb on - strand, within ABCV34_RS15820 at 3344.039 kb on + strand, within ABCV34_RS15820 at 3344.039 kb on + strand, within ABCV34_RS15820 at 3344.040 kb on - strand, within ABCV34_RS15820 at 3344.040 kb on - strand, within ABCV34_RS15820 at 3344.040 kb on - strand, within ABCV34_RS15820 at 3344.040 kb on - strand, within ABCV34_RS15820 at 3344.040 kb on - strand, within ABCV34_RS15820 at 3344.040 kb on - strand, within ABCV34_RS15820 at 3344.154 kb on - strand, within ABCV34_RS15820 at 3344.154 kb on - strand, within ABCV34_RS15820 at 3344.244 kb on + strand at 3344.271 kb on + strand at 3344.273 kb on + strand at 3344.273 kb on + strand at 3344.273 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 3,342,624 + -0.6 3,342,625 - -0.5 3,342,625 - -0.4 3,343,052 + ABCV34_RS15815 0.18 -0.2 3,343,052 + ABCV34_RS15815 0.18 -0.6 3,343,052 + ABCV34_RS15815 0.18 -0.8 3,343,052 + ABCV34_RS15815 0.18 +1.6 3,343,053 - ABCV34_RS15815 0.18 +0.1 3,343,053 - ABCV34_RS15815 0.18 +0.1 3,343,053 - ABCV34_RS15815 0.18 -1.1 3,343,053 - ABCV34_RS15815 0.18 -0.6 3,343,053 - ABCV34_RS15815 0.18 -0.9 3,343,053 - ABCV34_RS15815 0.18 -1.5 3,343,431 - ABCV34_RS15815 0.78 -1.9 3,343,652 + +0.0 3,343,652 + -0.9 3,343,652 + -0.0 3,343,653 - -1.1 3,343,653 - -1.1 3,343,703 + ABCV34_RS15820 0.12 -0.3 3,343,703 + ABCV34_RS15820 0.12 +1.6 3,343,703 + ABCV34_RS15820 0.12 +0.6 3,343,703 + ABCV34_RS15820 0.12 -1.0 3,343,703 + ABCV34_RS15820 0.12 +0.2 3,343,704 - ABCV34_RS15820 0.13 +0.1 3,343,704 - ABCV34_RS15820 0.13 +1.3 3,343,704 - ABCV34_RS15820 0.13 +0.3 3,344,039 + ABCV34_RS15820 0.64 -0.5 3,344,039 + ABCV34_RS15820 0.64 -1.3 3,344,040 - ABCV34_RS15820 0.64 -0.2 3,344,040 - ABCV34_RS15820 0.64 -2.2 3,344,040 - ABCV34_RS15820 0.64 -1.5 3,344,040 - ABCV34_RS15820 0.64 +0.7 3,344,040 - ABCV34_RS15820 0.64 -1.2 3,344,040 - ABCV34_RS15820 0.64 -0.9 3,344,154 - ABCV34_RS15820 0.81 +0.9 3,344,154 - ABCV34_RS15820 0.81 -0.2 3,344,244 + +0.4 3,344,271 + -1.8 3,344,273 + -2.0 3,344,273 + +0.2 3,344,273 + -0.2
Or see this region's nucleotide sequence