Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14945

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
3,171,281	+		ABCV34_RS14940	0.58	-1.9
3,171,282	-		ABCV34_RS14940	0.58	-0.4
3,171,282	-		ABCV34_RS14940	0.58	+0.3
3,171,865	+		ABCV34_RS14940	0.83	-1.0
3,171,866	-		ABCV34_RS14940	0.83	+0.4
3,171,866	-		ABCV34_RS14940	0.83	-2.0
3,172,023	+				-1.5
3,172,023	+				-1.5
3,172,023	+				-1.1
3,172,023	+				-0.6
3,172,023	+				-2.0
3,172,023	+				-1.6
3,172,023	+				-3.2
3,172,024	-				-1.9
3,172,024	-				+1.1
3,172,024	-				+0.7
3,172,024	-				-0.3
3,172,024	-				-1.6
3,172,024	-				-0.2
3,172,024	-				-1.0
3,172,052	+				+0.7
3,172,052	+				-0.5
3,172,053	-				-2.6
3,172,053	-				-0.9
3,172,053	-				-0.4
3,172,175	+				-0.4
3,172,314	+		ABCV34_RS14945	0.12	+0.8
3,172,314	+		ABCV34_RS14945	0.12	-0.2
3,172,314	+		ABCV34_RS14945	0.12	-2.8
3,172,314	+		ABCV34_RS14945	0.12	+0.9
3,172,314	+		ABCV34_RS14945	0.12	+1.4
3,172,314	+		ABCV34_RS14945	0.12	-0.6
3,172,314	+		ABCV34_RS14945	0.12	-0.2
3,172,314	+		ABCV34_RS14945	0.12	+0.8
3,172,314	+		ABCV34_RS14945	0.12	-2.0
3,172,314	+		ABCV34_RS14945	0.12	-0.7
3,172,314	+		ABCV34_RS14945	0.12	-1.6
3,172,314	+		ABCV34_RS14945	0.12	-1.0
3,172,314	+		ABCV34_RS14945	0.12	+0.1
3,172,314	+		ABCV34_RS14945	0.12	-2.8
3,172,314	+		ABCV34_RS14945	0.12	-0.8
3,172,314	+		ABCV34_RS14945	0.12	-2.1
3,172,314	+		ABCV34_RS14945	0.12	-0.4
3,172,314	+		ABCV34_RS14945	0.12	-0.5
3,172,315	-		ABCV34_RS14945	0.13	-0.2
3,172,315	-		ABCV34_RS14945	0.13	-3.3
3,172,315	-		ABCV34_RS14945	0.13	-0.8
3,172,315	-		ABCV34_RS14945	0.13	+0.6
3,172,315	-		ABCV34_RS14945	0.13	-2.6
3,172,315	-		ABCV34_RS14945	0.13	-0.3
3,172,315	-		ABCV34_RS14945	0.13	+0.8
3,172,315	-		ABCV34_RS14945	0.13	+0.1
3,172,315	-		ABCV34_RS14945	0.13	-2.2
3,172,350	+		ABCV34_RS14945	0.19	-0.6
3,172,350	+		ABCV34_RS14945	0.19	-1.6
3,172,350	+		ABCV34_RS14945	0.19	-0.3
3,172,381	+		ABCV34_RS14945	0.24	-1.9
3,172,381	+		ABCV34_RS14945	0.24	-2.7
3,172,382	-		ABCV34_RS14945	0.24	-0.9
3,172,402	+		ABCV34_RS14945	0.28	+0.6
3,172,402	+		ABCV34_RS14945	0.28	-0.2
3,172,403	-		ABCV34_RS14945	0.28	+1.9
3,172,491	+		ABCV34_RS14945	0.44	+0.4
3,172,491	+		ABCV34_RS14945	0.44	-0.5
3,172,492	-		ABCV34_RS14945	0.44	-0.6
3,172,492	-		ABCV34_RS14945	0.44	-1.1
3,172,517	+		ABCV34_RS14945	0.48	-1.6
3,172,517	+		ABCV34_RS14945	0.48	-1.0
3,172,518	-		ABCV34_RS14945	0.48	-1.9
3,172,518	-		ABCV34_RS14945	0.48	-0.5
3,172,518	-		ABCV34_RS14945	0.48	-2.1
3,172,518	-		ABCV34_RS14945	0.48	-0.3
3,172,607	+		ABCV34_RS14945	0.64	+0.4
3,172,607	+		ABCV34_RS14945	0.64	-0.2
3,172,607	+		ABCV34_RS14945	0.64	+0.5
3,172,607	+		ABCV34_RS14945	0.64	+0.7
3,172,608	-		ABCV34_RS14945	0.64	-1.4
3,172,608	-		ABCV34_RS14945	0.64	-3.0
3,172,608	-		ABCV34_RS14945	0.64	-1.7
3,172,608	-		ABCV34_RS14945	0.64	+0.2
3,172,608	-		ABCV34_RS14945	0.64	-0.5
3,172,722	-		ABCV34_RS14945	0.84	-0.7
3,172,818	+				-1.1
3,172,818	+				+0.1
3,172,819	-				+0.2
3,172,819	-				-1.1
3,172,819	-				-0.7
3,172,837	+				+1.5
3,172,837	+				+0.4
3,172,837	+				+0.5
3,172,837	+				-1.6
3,172,837	+				-3.4
3,172,838	-				+0.1
3,172,838	-				+1.4
3,172,838	-				+0.3
3,172,838	-				+0.4
3,172,838	-				-0.9
3,173,148	+		ABCV34_RS14950	0.28	-1.0
3,173,148	+		ABCV34_RS14950	0.28	-0.9
3,173,148	+		ABCV34_RS14950	0.28	-1.4
3,173,148	+		ABCV34_RS14950	0.28	-2.0
3,173,148	+		ABCV34_RS14950	0.28	-3.9
3,173,148	+		ABCV34_RS14950	0.28	+0.7
3,173,148	+		ABCV34_RS14950	0.28	-0.0
3,173,149	-		ABCV34_RS14950	0.28	+1.0
3,173,149	-		ABCV34_RS14950	0.28	-0.5
3,173,149	-		ABCV34_RS14950	0.28	-1.2
3,173,206	-		ABCV34_RS14950	0.33	-1.3
3,173,211	+		ABCV34_RS14950	0.34	-0.9
3,173,211	+		ABCV34_RS14950	0.34	+0.0
3,173,212	-		ABCV34_RS14950	0.34	-2.3
3,173,212	-		ABCV34_RS14950	0.34	-1.4
3,173,212	-		ABCV34_RS14950	0.34	-1.1
3,173,280	+		ABCV34_RS14950	0.39	-1.7
3,173,280	+		ABCV34_RS14950	0.39	-1.6
3,173,280	+		ABCV34_RS14950	0.39	-1.5
3,173,281	-		ABCV34_RS14950	0.39	-0.7
3,173,281	-		ABCV34_RS14950	0.39	-2.3
3,173,281	-		ABCV34_RS14950	0.39	-1.7
3,173,281	-		ABCV34_RS14950	0.39	-1.2
3,173,281	-		ABCV34_RS14950	0.39	-0.1
3,173,281	-		ABCV34_RS14950	0.39	-0.9
3,173,282	+		ABCV34_RS14950	0.39	-0.9
3,173,435	+		ABCV34_RS14950	0.52	-0.0
3,173,436	-		ABCV34_RS14950	0.52	-0.6
3,173,436	-		ABCV34_RS14950	0.52	-0.6
3,173,661	+		ABCV34_RS14950	0.71	-0.0
3,173,661	+		ABCV34_RS14950	0.71	-0.3
3,173,661	+		ABCV34_RS14950	0.71	-1.1
3,173,661	+		ABCV34_RS14950	0.71	+0.7
3,173,661	+		ABCV34_RS14950	0.71	-0.5
3,173,661	+		ABCV34_RS14950	0.71	-0.0
3,173,661	+		ABCV34_RS14950	0.71	-1.7
3,173,661	+		ABCV34_RS14950	0.71	-0.4
3,173,661	+		ABCV34_RS14950	0.71	-0.1
3,173,661	+		ABCV34_RS14950	0.71	+1.0
3,173,661	+		ABCV34_RS14950	0.71	+2.0
3,173,661	+		ABCV34_RS14950	0.71	-0.1
3,173,661	+		ABCV34_RS14950	0.71	-0.3
3,173,661	+		ABCV34_RS14950	0.71	-1.5
3,173,662	-		ABCV34_RS14950	0.71	-0.9
3,173,662	-		ABCV34_RS14950	0.71	-3.6
3,173,662	-		ABCV34_RS14950	0.71	+0.8
3,173,662	-		ABCV34_RS14950	0.71	-0.5
3,173,662	-		ABCV34_RS14950	0.71	-0.2
3,173,662	-		ABCV34_RS14950	0.71	-2.4
3,173,662	-		ABCV34_RS14950	0.71	-0.0
3,173,662	-		ABCV34_RS14950	0.71	-1.9
3,173,662	-		ABCV34_RS14950	0.71	-1.7
3,173,662	-		ABCV34_RS14950	0.71	-3.1
3,173,662	-		ABCV34_RS14950	0.71	+0.2
3,173,662	-		ABCV34_RS14950	0.71	+0.1
3,173,662	-		ABCV34_RS14950	0.71	-0.6
3,173,662	-		ABCV34_RS14950	0.71	-0.5
3,173,662	-		ABCV34_RS14950	0.71	-0.3
3,173,662	-		ABCV34_RS14950	0.71	-4.5
3,173,662	-		ABCV34_RS14950	0.71	-0.5
3,173,777	+		ABCV34_RS14950	0.81	+0.2
3,173,777	+		ABCV34_RS14950	0.81	-3.5
3,173,777	+		ABCV34_RS14950	0.81	+1.6
3,173,778	-		ABCV34_RS14950	0.81	-1.2
3,173,778	-		ABCV34_RS14950	0.81	-2.0
3,173,778	-		ABCV34_RS14950	0.81	-1.0