Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14890

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
3,161,787	+		ABCV34_RS14885	0.12	-1.0
3,161,787	+		ABCV34_RS14885	0.12	-1.6
3,161,787	+		ABCV34_RS14885	0.12	+0.1
3,161,787	+		ABCV34_RS14885	0.12	-1.2
3,161,788	-		ABCV34_RS14885	0.12	-1.2
3,161,788	-		ABCV34_RS14885	0.12	+1.2
3,161,864	+		ABCV34_RS14885	0.19	-1.9
3,161,930	+		ABCV34_RS14885	0.25	-2.2
3,161,930	+		ABCV34_RS14885	0.25	-1.5
3,161,930	+		ABCV34_RS14885	0.25	-2.1
3,161,931	-		ABCV34_RS14885	0.25	-0.0
3,161,931	-		ABCV34_RS14885	0.25	-1.6
3,161,938	-		ABCV34_RS14885	0.26	-0.2
3,161,938	-		ABCV34_RS14885	0.26	-3.9
3,162,011	+		ABCV34_RS14885	0.33	-1.5
3,162,095	+		ABCV34_RS14885	0.40	-2.1
3,162,095	+		ABCV34_RS14885	0.40	-0.5
3,162,096	-		ABCV34_RS14885	0.40	-1.3
3,162,096	-		ABCV34_RS14885	0.40	-0.9
3,162,096	-		ABCV34_RS14885	0.40	-3.0
3,162,158	+		ABCV34_RS14885	0.46	-2.2
3,162,159	-		ABCV34_RS14885	0.46	-2.4
3,162,221	+		ABCV34_RS14885	0.52	-1.2
3,162,221	+		ABCV34_RS14885	0.52	-1.8
3,162,221	+		ABCV34_RS14885	0.52	-1.8
3,162,221	+		ABCV34_RS14885	0.52	-1.1
3,162,221	+		ABCV34_RS14885	0.52	-0.1
3,162,221	+		ABCV34_RS14885	0.52	-1.7
3,162,221	+		ABCV34_RS14885	0.52	-1.6
3,162,221	+		ABCV34_RS14885	0.52	-0.6
3,162,221	+		ABCV34_RS14885	0.52	-2.7
3,162,221	+		ABCV34_RS14885	0.52	-2.1
3,162,222	-		ABCV34_RS14885	0.52	-0.8
3,162,222	-		ABCV34_RS14885	0.52	+1.3
3,162,222	-		ABCV34_RS14885	0.52	+0.3
3,162,222	-		ABCV34_RS14885	0.52	-2.0
3,162,222	-		ABCV34_RS14885	0.52	+0.6
3,162,222	-		ABCV34_RS14885	0.52	-1.7
3,162,222	-		ABCV34_RS14885	0.52	-0.0
3,162,222	-		ABCV34_RS14885	0.52	+1.0
3,162,222	-		ABCV34_RS14885	0.52	-3.6
3,162,222	-		ABCV34_RS14885	0.52	-2.1
3,162,238	+		ABCV34_RS14885	0.53	+0.1
3,162,269	+		ABCV34_RS14885	0.56	+0.1
3,162,270	-		ABCV34_RS14885	0.56	+0.0
3,162,270	-		ABCV34_RS14885	0.56	-0.8
3,162,552	-		ABCV34_RS14885	0.82	+0.0
3,162,590	+		ABCV34_RS14885	0.86	-1.6
3,162,591	-		ABCV34_RS14885	0.86	-2.5
3,162,591	-		ABCV34_RS14885	0.86	-1.2
3,162,591	-		ABCV34_RS14885	0.86	-0.6
3,162,591	-		ABCV34_RS14885	0.86	-1.4
3,162,591	-		ABCV34_RS14885	0.86	-0.7
3,162,627	-		ABCV34_RS14885	0.89	-1.9
3,162,627	-		ABCV34_RS14885	0.89	+0.6
3,162,643	+				-0.6
3,162,643	+				-0.3
3,162,644	-				-1.1
3,162,644	-				-0.3
3,162,696	+				-1.6
3,162,696	+				+0.0
3,162,697	-				-0.0
3,162,744	-				-0.7
3,162,764	+				-0.4
3,162,764	+				-0.9
3,162,764	+				-2.3
3,162,765	-				-1.3
3,162,943	+		ABCV34_RS14890	0.25	-0.4
3,162,943	+		ABCV34_RS14890	0.25	+0.2
3,162,943	+		ABCV34_RS14890	0.25	-0.1
3,162,944	-		ABCV34_RS14890	0.26	-0.3
3,162,944	-		ABCV34_RS14890	0.26	+0.2
3,163,257	+		ABCV34_RS14890	0.68	-2.0
3,163,258	-		ABCV34_RS14890	0.68	+0.7
3,163,258	-		ABCV34_RS14890	0.68	+0.7
3,163,271	-		ABCV34_RS14890	0.70	-0.4
3,163,296	+		ABCV34_RS14890	0.73	-0.3
3,163,481	+				-2.2
3,163,482	-				-0.1
3,163,492	+				-1.0
3,163,492	+				-1.4
3,163,493	-				-1.1
3,163,493	-				-1.0
3,163,493	-				-2.6
3,163,493	-				-1.4
3,163,569	+		ABCV34_RS14895	0.11	-1.4
3,163,569	+		ABCV34_RS14895	0.11	-2.9
3,163,569	+		ABCV34_RS14895	0.11	-0.9
3,163,569	+		ABCV34_RS14895	0.11	-0.5
3,163,569	+		ABCV34_RS14895	0.11	+0.5
3,163,569	+		ABCV34_RS14895	0.11	+1.9
3,163,570	-		ABCV34_RS14895	0.11	-1.2
3,163,570	-		ABCV34_RS14895	0.11	-2.0
3,163,572	+		ABCV34_RS14895	0.11	-3.0
3,163,572	+		ABCV34_RS14895	0.11	-1.5
3,163,573	-		ABCV34_RS14895	0.11	-1.2
3,163,573	-		ABCV34_RS14895	0.11	+1.1
3,163,573	-		ABCV34_RS14895	0.11	-1.8
3,163,573	-		ABCV34_RS14895	0.11	-0.3
3,163,692	+		ABCV34_RS14895	0.26	-1.8
3,163,693	-		ABCV34_RS14895	0.27	-1.1
3,163,778	+		ABCV34_RS14895	0.37	-1.8
3,163,778	+		ABCV34_RS14895	0.37	-0.7
3,163,778	+		ABCV34_RS14895	0.37	-1.7
3,163,778	+		ABCV34_RS14895	0.37	-1.9
3,163,779	-		ABCV34_RS14895	0.38	-2.0
3,163,779	-		ABCV34_RS14895	0.38	-1.2
3,163,779	-		ABCV34_RS14895	0.38	-0.8
3,163,779	-		ABCV34_RS14895	0.38	-2.8
3,163,779	-		ABCV34_RS14895	0.38	-2.6
3,163,779	-		ABCV34_RS14895	0.38	+0.2
3,164,043	+		ABCV34_RS14895	0.72	-1.2
3,164,043	+		ABCV34_RS14895	0.72	-1.6
3,164,043	+		ABCV34_RS14895	0.72	-0.2
3,164,043	+		ABCV34_RS14895	0.72	+0.9
3,164,043	+		ABCV34_RS14895	0.72	-3.1
3,164,043	+		ABCV34_RS14895	0.72	+1.0
3,164,043	+		ABCV34_RS14895	0.72	+0.2
3,164,043	+		ABCV34_RS14895	0.72	-2.1
3,164,043	+		ABCV34_RS14895	0.72	-0.4
3,164,043	+		ABCV34_RS14895	0.72	-1.4
3,164,043	+		ABCV34_RS14895	0.72	-0.6
3,164,043	+		ABCV34_RS14895	0.72	-1.1
3,164,043	+		ABCV34_RS14895	0.72	-3.2
3,164,044	-		ABCV34_RS14895	0.72	-0.5
3,164,044	-		ABCV34_RS14895	0.72	-2.7
3,164,044	-		ABCV34_RS14895	0.72	-2.1
3,164,089	+		ABCV34_RS14895	0.77	-1.4
3,164,089	+		ABCV34_RS14895	0.77	-0.3
3,164,099	+		ABCV34_RS14895	0.79	-0.3
3,164,100	-		ABCV34_RS14895	0.79	-2.6
3,164,302	+		ABCV34_RS14900	0.11	+0.4
3,164,302	+		ABCV34_RS14900	0.11	-1.5
3,164,302	+		ABCV34_RS14900	0.11	-1.2
3,164,302	+		ABCV34_RS14900	0.11	-0.4
3,164,302	+		ABCV34_RS14900	0.11	-2.0
3,164,302	+		ABCV34_RS14900	0.11	+0.8
3,164,302	+		ABCV34_RS14900	0.11	-1.5
3,164,302	+		ABCV34_RS14900	0.11	+0.0
3,164,302	+		ABCV34_RS14900	0.11	+0.2
3,164,302	+		ABCV34_RS14900	0.11	-3.1
3,164,302	+		ABCV34_RS14900	0.11	-0.6
3,164,302	+		ABCV34_RS14900	0.11	+1.0
3,164,302	+		ABCV34_RS14900	0.11	-0.4
3,164,303	-		ABCV34_RS14900	0.11	-3.8
3,164,303	-		ABCV34_RS14900	0.11	+0.1
3,164,303	-		ABCV34_RS14900	0.11	+0.5
3,164,303	-		ABCV34_RS14900	0.11	-2.6
3,164,303	-		ABCV34_RS14900	0.11	-2.1
3,164,303	-		ABCV34_RS14900	0.11	-1.7
3,164,303	-		ABCV34_RS14900	0.11	-0.3
3,164,303	-		ABCV34_RS14900	0.11	+2.0
3,164,303	-		ABCV34_RS14900	0.11	-0.8
3,164,303	-		ABCV34_RS14900	0.11	-3.0
3,164,348	+		ABCV34_RS14900	0.29	-1.0
3,164,368	+		ABCV34_RS14900	0.36	-0.8
3,164,368	+		ABCV34_RS14900	0.36	+0.2
3,164,368	+		ABCV34_RS14900	0.36	-0.8
3,164,369	-		ABCV34_RS14900	0.37	-0.6
3,164,369	-		ABCV34_RS14900	0.37	-0.9
3,164,446	+		ABCV34_RS14900	0.67	+0.4
3,164,446	+		ABCV34_RS14900	0.67	+0.1
3,164,446	+		ABCV34_RS14900	0.67	+0.5
3,164,447	-		ABCV34_RS14900	0.67	+1.0
3,164,447	-		ABCV34_RS14900	0.67	-2.2