Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS13895

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,946,844	-				+0.4
2,946,844	-				-0.5
2,946,844	-				-0.9
2,946,844	-				-1.3
2,946,844	-				-1.2
2,946,856	-				+0.7
2,946,909	+				+0.4
2,946,910	-				-0.1
2,946,910	-				-2.6
2,946,980	+		ABCV34_RS13890	0.12	-0.0
2,946,981	-		ABCV34_RS13890	0.12	-1.4
2,947,294	+		ABCV34_RS13890	0.50	-1.9
2,947,295	-		ABCV34_RS13890	0.50	-0.5
2,947,379	+		ABCV34_RS13890	0.61	-1.3
2,947,379	+		ABCV34_RS13890	0.61	-0.4
2,947,380	-		ABCV34_RS13890	0.61	-1.2
2,947,380	-		ABCV34_RS13890	0.61	-2.4
2,947,380	-		ABCV34_RS13890	0.61	-0.9
2,947,380	-		ABCV34_RS13890	0.61	-1.5
2,947,380	-		ABCV34_RS13890	0.61	+1.5
2,947,380	-		ABCV34_RS13890	0.61	-0.9
2,947,380	-		ABCV34_RS13890	0.61	-1.8
2,947,380	-		ABCV34_RS13890	0.61	-2.8
2,947,439	+		ABCV34_RS13890	0.68	-2.0
2,947,463	+		ABCV34_RS13890	0.71	-1.1
2,947,463	+		ABCV34_RS13890	0.71	-1.5
2,947,463	+		ABCV34_RS13890	0.71	-2.1
2,947,463	+		ABCV34_RS13890	0.71	-0.3
2,947,463	+		ABCV34_RS13890	0.71	-1.6
2,947,463	+		ABCV34_RS13890	0.71	-1.9
2,947,463	+		ABCV34_RS13890	0.71	-0.7
2,947,464	-		ABCV34_RS13890	0.71	-3.0
2,947,464	-		ABCV34_RS13890	0.71	-1.1
2,947,464	-		ABCV34_RS13890	0.71	+2.2
2,947,464	-		ABCV34_RS13890	0.71	-0.2
2,947,464	-		ABCV34_RS13890	0.71	-1.5
2,947,627	+				-1.8
2,947,896	+		ABCV34_RS13895	0.23	-0.6
2,947,896	+		ABCV34_RS13895	0.23	-1.0
2,947,896	+		ABCV34_RS13895	0.23	-1.0
2,947,965	+		ABCV34_RS13895	0.39	+1.7
2,947,966	-		ABCV34_RS13895	0.39	+0.2
2,948,081	+		ABCV34_RS13895	0.64	+1.8
2,948,214	-				-1.9
2,948,214	-				-0.1
2,948,240	+				-2.5
2,948,240	+				-1.6
2,948,241	-				-0.9
2,948,300	-		ABCV34_RS13900	0.11	-1.9
2,948,309	+		ABCV34_RS13900	0.12	+2.5
2,948,310	-		ABCV34_RS13900	0.12	-0.6
2,948,565	+		ABCV34_RS13900	0.56	+1.9
2,948,565	+		ABCV34_RS13900	0.56	-1.2
2,948,565	+		ABCV34_RS13900	0.56	-1.4
2,948,565	+		ABCV34_RS13900	0.56	-0.6
2,948,565	+		ABCV34_RS13900	0.56	-1.2
2,948,566	-		ABCV34_RS13900	0.56	-0.7
2,948,566	-		ABCV34_RS13900	0.56	-1.7
2,948,566	-		ABCV34_RS13900	0.56	-0.9
2,948,566	-		ABCV34_RS13900	0.56	-3.5
2,948,566	-		ABCV34_RS13900	0.56	-0.3
2,948,566	-		ABCV34_RS13900	0.56	-2.5
2,948,583	+		ABCV34_RS13900	0.59	+0.2
2,948,584	-		ABCV34_RS13900	0.59	-1.7
2,948,673	+		ABCV34_RS13900	0.75	-2.0
2,948,741	+		ABCV34_RS13900	0.86	-2.1
2,948,741	+		ABCV34_RS13900	0.86	-1.6
2,948,741	+		ABCV34_RS13900	0.86	-0.3
2,948,741	+		ABCV34_RS13900	0.86	-2.0
2,948,742	-		ABCV34_RS13900	0.86	-0.9
2,948,742	-		ABCV34_RS13900	0.86	-1.6
2,948,908	+				-1.6
2,948,908	+				-1.9
2,948,913	+				-0.9
2,948,913	+				-0.8
2,948,913	+				-0.7
2,948,913	+				-0.5
2,948,913	+				-0.7
2,948,913	+				-1.1
2,948,913	+				+0.0
2,948,914	-				-1.6
2,948,914	-				-3.8
2,948,914	-				-1.8
2,948,914	-				-0.3
2,948,914	-				-2.1
2,948,914	-				-1.5
2,948,914	-				-1.0
2,948,914	-				-1.4
2,948,919	-				+1.3
2,948,919	-				-1.7
2,948,955	+				+1.4
2,948,955	+				+0.9
2,948,955	+				-0.7
2,948,955	+				-0.9
2,948,955	+				+1.2
2,948,955	+				-0.8
2,948,955	+				-0.1
2,948,955	+				-0.9
2,948,955	+				-2.0
2,948,955	+				-1.3
2,948,955	+				-0.7
2,948,955	+				-2.4
2,948,955	+				-1.7
2,948,955	+				+0.3
2,948,955	+				-3.7
2,948,956	-				-1.6
2,948,956	-				-2.0
2,948,956	-				+0.6
2,948,956	-				+0.5
2,948,956	-				-0.6
2,948,956	-				+0.1
2,948,956	-				-1.7
2,948,956	-				-0.5
2,948,956	-				-0.6
2,948,956	-				+1.9
2,948,956	-				-0.0
2,948,956	-				-0.8
2,948,956	-				-0.7
2,948,956	-				-1.7
2,948,956	-				-1.2
2,948,956	-				+0.7
2,948,956	-				-3.9
2,948,956	-				-2.0
2,948,956	-				-0.7
2,948,956	-				-0.3
2,948,956	-				+0.9
2,948,956	-				+1.1
2,948,956	-				-1.3
2,948,956	-				-1.0
2,948,956	-				-0.1
2,948,957	+				-1.3
2,948,957	+				-0.6
2,948,957	+				-1.2
2,948,957	+				-0.7
2,948,957	+				-1.9
2,948,957	+				-1.2
2,948,957	+				-1.6
2,948,957	+				+0.9
2,948,957	+				-1.9
2,948,958	-				-1.1
2,948,958	-				-1.7
2,948,958	-				-1.3
2,948,958	-				-2.0
2,948,958	-				-4.1
2,948,958	-				-1.9
2,948,958	-				-1.9
2,948,958	-				-0.2
2,948,958	-				-0.6
2,948,958	-				-0.9
2,949,055	+				-0.9
2,949,055	+				-1.4
2,949,056	-				-1.3
2,949,084	+				-2.7
2,949,084	+				-0.8
2,949,085	-				-2.8
2,949,141	+				-1.8
2,949,142	-				-2.9
2,949,186	-		ABCV34_RS13905	0.13	+0.2
2,949,203	+		ABCV34_RS13905	0.15	-0.1
2,949,203	+		ABCV34_RS13905	0.15	-0.1
2,949,203	+		ABCV34_RS13905	0.15	-0.1
2,949,203	+		ABCV34_RS13905	0.15	+1.5
2,949,203	+		ABCV34_RS13905	0.15	-3.1
2,949,203	+		ABCV34_RS13905	0.15	-1.1
2,949,203	+		ABCV34_RS13905	0.15	-0.4
2,949,203	+		ABCV34_RS13905	0.15	-0.7
2,949,203	+		ABCV34_RS13905	0.15	-0.8
2,949,203	+		ABCV34_RS13905	0.15	-1.3
2,949,203	+		ABCV34_RS13905	0.15	+1.9
2,949,203	+		ABCV34_RS13905	0.15	-3.2
2,949,203	+		ABCV34_RS13905	0.15	-4.0
2,949,203	+		ABCV34_RS13905	0.15	+1.5
2,949,204	-		ABCV34_RS13905	0.15	-2.1
2,949,204	-		ABCV34_RS13905	0.15	-0.7
2,949,204	-		ABCV34_RS13905	0.15	-1.8
2,949,204	-		ABCV34_RS13905	0.15	-2.8
2,949,204	-		ABCV34_RS13905	0.15	-2.1
2,949,204	-		ABCV34_RS13905	0.15	-0.9
2,949,204	-		ABCV34_RS13905	0.15	-0.1
2,949,204	-		ABCV34_RS13905	0.15	-1.6