Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12790

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,715,245	+		ABCV34_RS12785	0.73	-1.0
2,715,245	+		ABCV34_RS12785	0.73	-2.3
2,715,245	+		ABCV34_RS12785	0.73	-1.0
2,715,246	-		ABCV34_RS12785	0.73	+0.6
2,715,246	-		ABCV34_RS12785	0.73	+2.8
2,715,246	-		ABCV34_RS12785	0.73	-1.8
2,715,246	-		ABCV34_RS12785	0.73	-0.1
2,715,246	-		ABCV34_RS12785	0.73	-0.3
2,715,246	-		ABCV34_RS12785	0.73	+1.2
2,715,246	-		ABCV34_RS12785	0.73	-0.6
2,715,246	-		ABCV34_RS12785	0.73	-0.2
2,715,246	-		ABCV34_RS12785	0.73	-0.3
2,715,246	-		ABCV34_RS12785	0.73	+0.1
2,715,246	-		ABCV34_RS12785	0.73	-0.6
2,715,246	-		ABCV34_RS12785	0.73	-0.4
2,715,278	+		ABCV34_RS12785	0.75	-3.0
2,715,278	+		ABCV34_RS12785	0.75	-1.7
2,715,278	+		ABCV34_RS12785	0.75	+1.0
2,715,278	+		ABCV34_RS12785	0.75	+0.1
2,715,278	+		ABCV34_RS12785	0.75	-0.3
2,715,279	-		ABCV34_RS12785	0.75	-0.7
2,715,279	-		ABCV34_RS12785	0.75	-1.0
2,715,279	-		ABCV34_RS12785	0.75	+0.2
2,715,279	-		ABCV34_RS12785	0.75	-1.5
2,715,308	+		ABCV34_RS12785	0.76	-1.7
2,715,308	+		ABCV34_RS12785	0.76	-0.9
2,715,308	+		ABCV34_RS12785	0.76	+1.2
2,715,308	+		ABCV34_RS12785	0.76	-0.4
2,715,308	+		ABCV34_RS12785	0.76	-1.5
2,715,308	+		ABCV34_RS12785	0.76	-2.7
2,715,308	+		ABCV34_RS12785	0.76	-0.3
2,715,308	+		ABCV34_RS12785	0.76	+0.8
2,715,309	-		ABCV34_RS12785	0.77	-0.6
2,715,500	+		ABCV34_RS12785	0.88	-1.4
2,715,501	-		ABCV34_RS12785	0.88	+1.8
2,715,501	-		ABCV34_RS12785	0.88	-1.9
2,715,539	+				-1.9
2,715,539	+				-1.2
2,715,540	-				+0.2
2,715,540	-				+1.7
2,715,540	-				-2.6
2,715,602	+				+0.2
2,715,677	+				-2.0
2,715,677	+				-0.9
2,715,678	-				-1.5
2,715,730	+				-2.6
2,715,730	+				-1.5
2,715,730	+				-0.4
2,715,730	+				+0.7
2,715,731	-				-1.3
2,715,731	-				+1.8
2,715,745	+				-0.2
2,715,745	+				-0.1
2,715,745	+				-0.2
2,715,746	-				+0.2
2,715,746	-				-0.1
2,716,046	+		ABCV34_RS12790	0.12	-0.8
2,716,086	-		ABCV34_RS12790	0.15	-0.9
2,716,235	+		ABCV34_RS12790	0.25	-0.9
2,716,235	+		ABCV34_RS12790	0.25	-0.1
2,716,235	+		ABCV34_RS12790	0.25	-0.5
2,716,235	+		ABCV34_RS12790	0.25	-0.6
2,716,235	+		ABCV34_RS12790	0.25	-1.3
2,716,236	-		ABCV34_RS12790	0.25	-1.5
2,716,236	-		ABCV34_RS12790	0.25	-0.0
2,716,236	-		ABCV34_RS12790	0.25	-0.4
2,716,330	+		ABCV34_RS12790	0.31	-1.0
2,716,331	-		ABCV34_RS12790	0.31	-2.3
2,716,455	+		ABCV34_RS12790	0.40	-0.9
2,716,553	+		ABCV34_RS12790	0.47	-1.4
2,716,553	+		ABCV34_RS12790	0.47	+0.9
2,716,553	+		ABCV34_RS12790	0.47	-2.4
2,716,553	+		ABCV34_RS12790	0.47	-0.3
2,716,554	-		ABCV34_RS12790	0.47	-1.8
2,716,554	-		ABCV34_RS12790	0.47	+1.7
2,716,940	+		ABCV34_RS12790	0.73	+0.2
2,716,940	+		ABCV34_RS12790	0.73	-0.6
2,716,941	-		ABCV34_RS12790	0.73	+1.1
2,716,941	-		ABCV34_RS12790	0.73	+0.8
2,716,941	-		ABCV34_RS12790	0.73	-0.0
2,716,941	-		ABCV34_RS12790	0.73	+2.0
2,716,941	-		ABCV34_RS12790	0.73	+1.4
2,716,941	-		ABCV34_RS12790	0.73	+0.1
2,716,941	-		ABCV34_RS12790	0.73	-0.5
2,716,941	-		ABCV34_RS12790	0.73	-1.7
2,717,198	+				-0.8
2,717,199	-				+0.4
2,717,199	-				-0.0
2,717,241	-				-0.6
2,717,250	+				-1.8
2,717,251	-				-2.2
2,717,251	-				-1.6
2,717,365	+				-0.0
2,717,365	+				+0.3
2,717,365	+				-4.0
2,717,366	-				-0.2
2,717,366	-				-0.2
2,717,366	-				+1.5
2,717,366	-				-0.6
2,717,366	-				-2.0
2,717,366	-				-1.9
2,717,395	+				+0.6
2,717,395	+				-1.5
2,717,395	+				-0.7
2,717,395	+				-1.8
2,717,396	-				-0.7
2,717,396	-				-0.5
2,717,396	-				-0.7
2,717,396	-				+1.1
2,717,396	-				-1.7
2,717,396	-				-0.7
2,717,396	-				-1.5
2,717,586	+		ABCV34_RS12795	0.27	-0.5
2,717,586	+		ABCV34_RS12795	0.27	-0.6
2,717,586	+		ABCV34_RS12795	0.27	+0.4
2,717,587	-		ABCV34_RS12795	0.27	-1.6
2,717,587	-		ABCV34_RS12795	0.27	+0.2
2,717,587	-		ABCV34_RS12795	0.27	-0.1
2,717,587	-		ABCV34_RS12795	0.27	-0.9
2,717,587	-		ABCV34_RS12795	0.27	-1.8
2,717,587	-		ABCV34_RS12795	0.27	-1.0
2,717,587	-		ABCV34_RS12795	0.27	-0.5
2,717,713	+		ABCV34_RS12795	0.43	-2.4
2,717,713	+		ABCV34_RS12795	0.43	-1.6
2,717,837	+		ABCV34_RS12795	0.58	-0.6
2,717,837	+		ABCV34_RS12795	0.58	+0.3
2,717,837	+		ABCV34_RS12795	0.58	-1.0
2,717,837	+		ABCV34_RS12795	0.58	+0.8
2,717,837	+		ABCV34_RS12795	0.58	-2.3
2,717,837	+		ABCV34_RS12795	0.58	+0.1
2,717,837	+		ABCV34_RS12795	0.58	-1.5
2,717,838	-		ABCV34_RS12795	0.58	-0.9
2,717,838	-		ABCV34_RS12795	0.58	+0.2
2,717,838	-		ABCV34_RS12795	0.58	-1.0
2,717,838	-		ABCV34_RS12795	0.58	-3.1
2,717,838	-		ABCV34_RS12795	0.58	-0.4
2,717,838	-		ABCV34_RS12795	0.58	-1.9
2,717,838	-		ABCV34_RS12795	0.58	-1.0
2,717,838	-		ABCV34_RS12795	0.58	-0.2
2,717,838	-		ABCV34_RS12795	0.58	-0.4
2,717,838	-		ABCV34_RS12795	0.58	-1.0
2,717,838	-		ABCV34_RS12795	0.58	-0.1
2,717,838	-		ABCV34_RS12795	0.58	-1.6
2,717,941	+		ABCV34_RS12795	0.70	-1.8
2,717,941	+		ABCV34_RS12795	0.70	-3.7
2,717,941	+		ABCV34_RS12795	0.70	-0.8
2,717,941	+		ABCV34_RS12795	0.70	-3.8
2,717,941	+		ABCV34_RS12795	0.70	-1.9
2,717,942	-		ABCV34_RS12795	0.71	-2.6
2,717,942	-		ABCV34_RS12795	0.71	-0.3
2,717,983	+		ABCV34_RS12795	0.76	-0.2
2,717,983	+		ABCV34_RS12795	0.76	-1.0
2,717,984	-		ABCV34_RS12795	0.76	+0.4
2,717,984	-		ABCV34_RS12795	0.76	-1.3
2,717,984	-		ABCV34_RS12795	0.76	-2.6
2,717,984	-		ABCV34_RS12795	0.76	-2.2
2,717,984	-		ABCV34_RS12795	0.76	-1.5
2,717,984	-		ABCV34_RS12795	0.76	-2.4
2,718,109	+				-0.4
2,718,109	+				-1.7
2,718,109	+				-1.6
2,718,109	+				-0.9
2,718,109	+				-1.5
2,718,109	+				-0.2
2,718,109	+				+0.9
2,718,109	+				+1.0
2,718,110	-				-3.7
2,718,110	-				+0.0
2,718,110	-				+0.5
2,718,110	-				-0.8
2,718,110	-				-1.0
2,718,110	-				-1.3
2,718,110	-				-0.5
2,718,110	-				-3.2
2,718,110	-				+0.1
2,718,110	-				-0.1
2,718,110	-				-0.4
2,718,110	-				+0.3
2,718,211	+				-1.2
2,718,212	-				-0.8
2,718,274	+		ABCV34_RS12800	0.11	-2.6
2,718,274	+		ABCV34_RS12800	0.11	+0.8
2,718,275	-		ABCV34_RS12800	0.12	-0.3
2,718,307	+		ABCV34_RS12800	0.16	-2.8
2,718,307	+		ABCV34_RS12800	0.16	-1.2
2,718,308	-		ABCV34_RS12800	0.17	-0.2
2,718,308	-		ABCV34_RS12800	0.17	-0.5
2,718,308	-		ABCV34_RS12800	0.17	-1.4