Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12500

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,645,308	+		ABCV34_RS12490	0.68	-2.0
2,645,308	+		ABCV34_RS12490	0.68	-0.5
2,645,308	+		ABCV34_RS12490	0.68	-2.0
2,645,309	-		ABCV34_RS12490	0.68	-0.9
2,645,309	-		ABCV34_RS12490	0.68	+0.2
2,645,309	-		ABCV34_RS12490	0.68	-0.7
2,645,309	-		ABCV34_RS12490	0.68	+0.9
2,645,309	-		ABCV34_RS12490	0.68	-1.7
2,645,356	+		ABCV34_RS12490	0.73	-0.0
2,645,356	+		ABCV34_RS12490	0.73	-1.1
2,645,356	+		ABCV34_RS12490	0.73	+0.8
2,645,357	-		ABCV34_RS12490	0.74	-2.7
2,645,404	+		ABCV34_RS12490	0.79	+0.2
2,645,404	+		ABCV34_RS12490	0.79	-0.5
2,645,405	-		ABCV34_RS12490	0.79	-1.2
2,645,480	-		ABCV34_RS12490	0.87	-2.1
2,645,515	+				-0.8
2,645,515	+				-1.1
2,645,515	+				-2.7
2,645,515	+				-1.1
2,645,515	+				+0.1
2,645,515	+				-0.8
2,645,515	+				+0.2
2,645,515	+				-0.7
2,645,515	+				-0.7
2,645,515	+				-1.4
2,645,515	+				-0.7
2,645,515	+				-0.1
2,645,515	+				-0.7
2,645,515	+				-2.3
2,645,515	+				+0.2
2,645,515	+				-1.2
2,645,515	+				-0.5
2,645,516	-				-0.4
2,645,516	-				-0.6
2,645,516	-				-1.1
2,645,516	-				-0.2
2,645,516	-				-0.5
2,645,516	-				+0.4
2,645,516	-				+0.0
2,645,516	-				-1.2
2,645,516	-				+0.4
2,645,516	-				-3.4
2,645,516	-				-0.5
2,645,516	-				-1.1
2,645,560	+				-2.1
2,645,560	+				+0.0
2,645,560	+				-0.8
2,645,560	+				+1.8
2,645,560	+				-0.6
2,645,560	+				-3.8
2,645,560	+				-4.0
2,645,560	+				+0.2
2,645,560	+				-0.9
2,645,560	+				-1.1
2,645,560	+				-2.6
2,645,560	+				-1.5
2,645,560	+				-0.1
2,645,560	+				-0.9
2,645,560	+				-2.8
2,645,560	+				-1.0
2,645,560	+				-0.2
2,645,561	-				-2.7
2,645,561	-				-1.8
2,645,561	-				-1.0
2,645,561	-				-0.3
2,645,561	-				-1.9
2,645,561	-				-1.7
2,645,561	-				-0.3
2,645,561	-				+0.2
2,645,561	-				-2.0
2,645,561	-				-0.3
2,645,561	-				-2.6
2,645,561	-				-2.9
2,645,562	+				-1.8
2,645,562	+				-2.2
2,645,562	+				-0.1
2,645,562	+				-1.5
2,645,562	+				-2.3
2,645,562	+				+1.0
2,645,562	+				-0.7
2,645,562	+				-3.3
2,645,562	+				-2.8
2,645,562	+				-1.2
2,645,562	+				-3.9
2,645,562	+				-0.8
2,645,562	+				-0.7
2,645,562	+				-0.6
2,645,562	+				-0.3
2,645,562	+				-1.0
2,645,562	+				-0.3
2,645,562	+				-0.8
2,645,562	+				-1.3
2,645,563	-				+0.2
2,645,563	-				+1.8
2,645,563	-				-0.5
2,645,563	-				+0.5
2,645,563	-				-1.6
2,645,563	-				-0.8
2,645,563	-				-0.2
2,645,563	-				-1.0
2,645,563	-				-1.5
2,645,563	-				+2.0
2,645,563	-				-0.6
2,645,563	-				-1.0
2,645,563	-				+1.2
2,645,563	-				+0.6
2,645,563	-				-1.5
2,645,563	-				-0.8
2,645,563	-				-0.8
2,645,669	+				-0.5
2,645,669	+				-0.0
2,645,669	+				-2.3
2,645,669	+				-1.6
2,645,670	-				-0.3
2,645,670	-				-0.7
2,645,674	+				-0.9
2,645,674	+				-1.9
2,645,674	+				-2.1
2,645,711	+				+0.9
2,645,712	-				-2.1
2,645,797	+		ABCV34_RS12495	0.15	-3.3
2,645,797	+		ABCV34_RS12495	0.15	-1.3
2,645,797	+		ABCV34_RS12495	0.15	-0.7
2,645,797	+		ABCV34_RS12495	0.15	-4.4
2,645,798	-		ABCV34_RS12495	0.16	-0.6
2,645,798	-		ABCV34_RS12495	0.16	-3.0
2,645,798	-		ABCV34_RS12495	0.16	-0.2
2,645,798	-		ABCV34_RS12495	0.16	-1.0
2,645,857	+		ABCV34_RS12495	0.28	-2.6
2,645,857	+		ABCV34_RS12495	0.28	-0.9
2,645,857	+		ABCV34_RS12495	0.28	-1.4
2,645,857	+		ABCV34_RS12495	0.28	-2.0
2,645,857	+		ABCV34_RS12495	0.28	-1.4
2,645,857	+		ABCV34_RS12495	0.28	-0.2
2,645,858	-		ABCV34_RS12495	0.29	-0.3
2,645,858	-		ABCV34_RS12495	0.29	-0.6
2,645,858	-		ABCV34_RS12495	0.29	-0.3
2,646,043	+		ABCV34_RS12495	0.68	-1.2
2,646,043	+		ABCV34_RS12495	0.68	-1.3
2,646,044	-		ABCV34_RS12495	0.69	+0.8
2,646,044	-		ABCV34_RS12495	0.69	+1.2
2,646,044	-		ABCV34_RS12495	0.69	-1.8
2,646,044	-		ABCV34_RS12495	0.69	+0.2
2,646,064	+		ABCV34_RS12495	0.73	-3.2
2,646,064	+		ABCV34_RS12495	0.73	-0.3
2,646,064	+		ABCV34_RS12495	0.73	-2.4
2,646,064	+		ABCV34_RS12495	0.73	-0.2
2,646,065	-		ABCV34_RS12495	0.73	+0.8
2,646,065	-		ABCV34_RS12495	0.73	-0.2
2,646,169	+				-0.9
2,646,169	+				-0.6
2,646,169	+				+0.6
2,646,170	-				+0.3
2,646,170	-				-1.2
2,646,170	-				+0.2
2,646,170	-				-1.5
2,646,170	-				-0.6
2,646,324	+				-3.9
2,646,325	-		ABCV34_RS12500	0.10	-1.6
2,646,325	-		ABCV34_RS12500	0.10	-2.9
2,646,325	-		ABCV34_RS12500	0.10	+0.5
2,646,325	-		ABCV34_RS12500	0.10	-1.6
2,646,325	-		ABCV34_RS12500	0.10	+2.0
2,646,325	-		ABCV34_RS12500	0.10	-1.2
2,646,325	-		ABCV34_RS12500	0.10	+0.5
2,646,883	+				-0.6
2,646,883	+				-2.5
2,646,883	+				-0.2
2,646,883	+				+0.2
2,646,883	+				-0.7
2,646,883	+				-1.5
2,646,884	-				+0.2
2,646,884	-				-0.0
2,646,884	-				-1.3
2,646,884	-				-2.5
2,646,884	-				+0.2
2,646,884	-				-0.7
2,646,887	+				-1.2
2,646,888	-				+0.2
2,646,888	-				-0.8
2,646,888	-				-3.3
2,646,945	+				-0.1
2,646,945	+				+0.5
2,646,946	-				-0.4
2,647,013	+				-2.4
2,647,013	+				-1.8
2,647,013	+				-0.2
2,647,014	-				-0.1
2,647,014	-				-0.6
2,647,014	-				-2.6
2,647,014	-				-2.5
2,647,026	+				-2.0
2,647,026	+				-2.2
2,647,026	+				+2.3
2,647,027	-				+0.7
2,647,027	-				-3.6
2,647,027	-				-2.9
2,647,027	-				-1.8
2,647,159	-				-3.8
2,647,273	-		ABCV34_RS12505	0.15	-0.8
2,647,273	-		ABCV34_RS12505	0.15	-0.8