Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12280

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,593,642	+		ABCV34_RS12270	0.61	-1.2
2,593,642	+		ABCV34_RS12270	0.61	-2.5
2,593,642	+		ABCV34_RS12270	0.61	-1.9
2,593,642	+		ABCV34_RS12270	0.61	-3.8
2,593,642	+		ABCV34_RS12270	0.61	+1.2
2,593,642	+		ABCV34_RS12270	0.61	+0.3
2,593,642	+		ABCV34_RS12270	0.61	+0.3
2,593,642	+		ABCV34_RS12270	0.61	-0.5
2,593,642	+		ABCV34_RS12270	0.61	-0.9
2,593,642	+		ABCV34_RS12270	0.61	-0.5
2,593,642	+		ABCV34_RS12270	0.61	+0.6
2,593,642	+		ABCV34_RS12270	0.61	+0.1
2,593,642	+		ABCV34_RS12270	0.61	-3.1
2,593,642	+		ABCV34_RS12270	0.61	-0.6
2,593,643	-		ABCV34_RS12270	0.61	-1.8
2,593,643	-		ABCV34_RS12270	0.61	-0.8
2,593,643	-		ABCV34_RS12270	0.61	+0.8
2,593,643	-		ABCV34_RS12270	0.61	-3.2
2,593,643	-		ABCV34_RS12270	0.61	-1.2
2,593,643	-		ABCV34_RS12270	0.61	+0.1
2,593,643	-		ABCV34_RS12270	0.61	-1.4
2,593,643	-		ABCV34_RS12270	0.61	+1.1
2,593,643	-		ABCV34_RS12270	0.61	+0.6
2,593,643	-		ABCV34_RS12270	0.61	-1.5
2,593,643	-		ABCV34_RS12270	0.61	+1.2
2,593,643	-		ABCV34_RS12270	0.61	-2.3
2,593,643	-		ABCV34_RS12270	0.61	-1.8
2,593,643	-		ABCV34_RS12270	0.61	-3.6
2,593,643	-		ABCV34_RS12270	0.61	-0.3
2,593,659	+		ABCV34_RS12270	0.63	+1.6
2,593,659	+		ABCV34_RS12270	0.63	-1.2
2,593,659	+		ABCV34_RS12270	0.63	-2.3
2,593,659	+		ABCV34_RS12270	0.63	-2.0
2,593,660	-		ABCV34_RS12270	0.63	-1.4
2,593,663	+		ABCV34_RS12270	0.63	-2.2
2,593,663	+		ABCV34_RS12270	0.63	-1.4
2,593,663	+		ABCV34_RS12270	0.63	-3.2
2,593,663	+		ABCV34_RS12270	0.63	-2.4
2,593,664	-		ABCV34_RS12270	0.63	-2.2
2,593,664	-		ABCV34_RS12270	0.63	-1.7
2,593,664	-		ABCV34_RS12270	0.63	-1.0
2,593,664	-		ABCV34_RS12270	0.63	-0.0
2,593,664	-		ABCV34_RS12270	0.63	-0.8
2,593,664	-		ABCV34_RS12270	0.63	+0.6
2,593,664	-		ABCV34_RS12270	0.63	-0.6
2,593,731	+		ABCV34_RS12270	0.68	-1.5
2,593,732	-		ABCV34_RS12270	0.68	-1.5
2,593,851	+		ABCV34_RS12270	0.78	-2.7
2,593,851	+		ABCV34_RS12270	0.78	-0.1
2,593,852	-		ABCV34_RS12270	0.78	-2.2
2,593,852	-		ABCV34_RS12270	0.78	-1.2
2,593,852	-		ABCV34_RS12270	0.78	-1.0
2,593,852	-		ABCV34_RS12270	0.78	-1.8
2,594,219	+		ABCV34_RS12275	0.13	-1.1
2,594,220	-		ABCV34_RS12275	0.14	-1.7
2,594,220	-		ABCV34_RS12275	0.14	-1.6
2,594,268	+		ABCV34_RS12275	0.24	+0.9
2,594,268	+		ABCV34_RS12275	0.24	-0.6
2,594,268	+		ABCV34_RS12275	0.24	-1.0
2,594,268	+		ABCV34_RS12275	0.24	-2.9
2,594,268	+		ABCV34_RS12275	0.24	-0.2
2,594,269	-		ABCV34_RS12275	0.24	+0.4
2,594,269	-		ABCV34_RS12275	0.24	-1.2
2,594,269	-		ABCV34_RS12275	0.24	-1.6
2,594,269	-		ABCV34_RS12275	0.24	+0.8
2,594,269	-		ABCV34_RS12275	0.24	-2.6
2,594,269	-		ABCV34_RS12275	0.24	-4.0
2,594,269	-		ABCV34_RS12275	0.24	-1.0
2,594,312	+		ABCV34_RS12275	0.33	-0.8
2,594,312	+		ABCV34_RS12275	0.33	-0.5
2,594,312	+		ABCV34_RS12275	0.33	-0.6
2,594,313	-		ABCV34_RS12275	0.33	-3.0
2,594,425	-		ABCV34_RS12275	0.56	-0.9
2,594,425	-		ABCV34_RS12275	0.56	-1.9
2,594,450	+		ABCV34_RS12275	0.61	-1.0
2,594,450	+		ABCV34_RS12275	0.61	-0.9
2,594,450	+		ABCV34_RS12275	0.61	-1.5
2,594,450	+		ABCV34_RS12275	0.61	-1.7
2,594,450	+		ABCV34_RS12275	0.61	-1.4
2,594,451	-		ABCV34_RS12275	0.61	-2.0
2,594,451	-		ABCV34_RS12275	0.61	+0.6
2,594,451	-		ABCV34_RS12275	0.61	-0.9
2,594,451	-		ABCV34_RS12275	0.61	-0.6
2,594,451	-		ABCV34_RS12275	0.61	-2.0
2,594,451	-		ABCV34_RS12275	0.61	-2.6
2,594,451	-		ABCV34_RS12275	0.61	-2.4
2,594,451	-		ABCV34_RS12275	0.61	-1.5
2,594,451	-		ABCV34_RS12275	0.61	-0.7
2,594,487	+		ABCV34_RS12275	0.68	-1.8
2,594,487	+		ABCV34_RS12275	0.68	-0.9
2,594,487	+		ABCV34_RS12275	0.68	-2.4
2,594,487	+		ABCV34_RS12275	0.68	-0.8
2,594,487	+		ABCV34_RS12275	0.68	+1.6
2,594,488	-		ABCV34_RS12275	0.69	-2.2
2,594,488	-		ABCV34_RS12275	0.69	-0.2
2,594,488	-		ABCV34_RS12275	0.69	-0.9
2,594,488	-		ABCV34_RS12275	0.69	-0.0
2,594,514	+		ABCV34_RS12275	0.74	-1.1
2,594,515	-		ABCV34_RS12275	0.74	-0.5
2,594,515	-		ABCV34_RS12275	0.74	-1.4
2,594,515	-		ABCV34_RS12275	0.74	-0.5
2,594,887	+		ABCV34_RS12280	0.47	+1.0
2,594,888	-		ABCV34_RS12280	0.47	-1.9
2,594,888	-		ABCV34_RS12280	0.47	-3.0
2,594,888	-		ABCV34_RS12280	0.47	+0.3
2,594,888	-		ABCV34_RS12280	0.47	-2.0
2,594,955	+		ABCV34_RS12280	0.59	+0.6
2,594,956	-		ABCV34_RS12280	0.59	-1.9
2,594,956	-		ABCV34_RS12280	0.59	+1.8
2,595,183	+				-3.0
2,595,183	+				-1.8
2,595,184	-				-0.2
2,595,226	+				+1.4
2,595,227	-				-0.3
2,595,235	+				-3.6
2,595,235	+				-3.2
2,595,235	+				-0.5
2,595,235	+				+0.2
2,595,236	-				-1.1
2,595,300	+				-1.0
2,595,300	+				-3.0
2,595,301	-				-1.8
2,595,306	+				+0.2
2,595,307	-				-1.5
2,595,326	+				-1.0
2,595,339	+				-3.1
2,595,340	-				-1.5
2,595,340	-				-1.4
2,595,627	+		ABCV34_RS12285	0.27	-0.9
2,595,627	+		ABCV34_RS12285	0.27	-3.3
2,595,627	+		ABCV34_RS12285	0.27	-0.4
2,595,627	+		ABCV34_RS12285	0.27	+0.2
2,595,627	+		ABCV34_RS12285	0.27	+1.1
2,595,627	+		ABCV34_RS12285	0.27	-1.0
2,595,709	+		ABCV34_RS12285	0.35	-0.9
2,595,709	+		ABCV34_RS12285	0.35	-1.2
2,595,710	-		ABCV34_RS12285	0.35	-2.5
2,595,745	+		ABCV34_RS12285	0.38	-0.2
2,595,745	+		ABCV34_RS12285	0.38	-1.5
2,595,745	+		ABCV34_RS12285	0.38	-1.7
2,595,745	+		ABCV34_RS12285	0.38	-1.4
2,595,745	+		ABCV34_RS12285	0.38	-2.0
2,595,745	+		ABCV34_RS12285	0.38	-1.5
2,595,746	-		ABCV34_RS12285	0.38	-1.7
2,595,746	-		ABCV34_RS12285	0.38	+0.4
2,595,746	-		ABCV34_RS12285	0.38	-0.4
2,595,872	+		ABCV34_RS12285	0.50	-0.3
2,595,872	+		ABCV34_RS12285	0.50	-1.3
2,595,872	+		ABCV34_RS12285	0.50	-1.7
2,595,872	+		ABCV34_RS12285	0.50	-2.8
2,595,872	+		ABCV34_RS12285	0.50	-0.3
2,595,872	+		ABCV34_RS12285	0.50	-1.0
2,595,872	+		ABCV34_RS12285	0.50	-1.4
2,595,872	+		ABCV34_RS12285	0.50	-0.5
2,595,872	+		ABCV34_RS12285	0.50	-1.8
2,595,872	+		ABCV34_RS12285	0.50	-0.7
2,595,873	-		ABCV34_RS12285	0.50	-0.1
2,595,873	-		ABCV34_RS12285	0.50	-0.9
2,595,873	-		ABCV34_RS12285	0.50	+0.8
2,595,873	-		ABCV34_RS12285	0.50	-0.7
2,595,873	-		ABCV34_RS12285	0.50	-2.0
2,595,873	-		ABCV34_RS12285	0.50	-1.7
2,595,873	-		ABCV34_RS12285	0.50	-2.1
2,595,873	-		ABCV34_RS12285	0.50	+0.3
2,595,873	-		ABCV34_RS12285	0.50	-0.1
2,596,046	+		ABCV34_RS12285	0.66	+1.0
2,596,047	-		ABCV34_RS12285	0.66	-0.7
2,596,146	+		ABCV34_RS12285	0.76	-1.8
2,596,147	-		ABCV34_RS12285	0.76	-0.1
2,596,147	-		ABCV34_RS12285	0.76	-0.5