Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS11225

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,390,974	+				-2.1
2,390,974	+				+0.2
2,391,172	+		ABCV34_RS11225	0.27	+0.3
2,391,172	+		ABCV34_RS11225	0.27	+0.7
2,391,172	+		ABCV34_RS11225	0.27	-1.6
2,391,172	+		ABCV34_RS11225	0.27	-2.4
2,391,173	-		ABCV34_RS11225	0.28	+0.9
2,391,173	-		ABCV34_RS11225	0.28	-2.6
2,391,173	-		ABCV34_RS11225	0.28	+1.9
2,391,173	-		ABCV34_RS11225	0.28	-1.6
2,391,173	-		ABCV34_RS11225	0.28	-0.2
2,391,173	-		ABCV34_RS11225	0.28	+1.0
2,391,173	-		ABCV34_RS11225	0.28	-0.9
2,391,181	+		ABCV34_RS11225	0.29	-0.6
2,391,181	+		ABCV34_RS11225	0.29	+0.1
2,391,181	+		ABCV34_RS11225	0.29	-3.7
2,391,181	+		ABCV34_RS11225	0.29	+0.4
2,391,182	-		ABCV34_RS11225	0.29	+0.8
2,391,256	+		ABCV34_RS11225	0.40	-0.5
2,391,256	+		ABCV34_RS11225	0.40	+0.8
2,391,256	+		ABCV34_RS11225	0.40	+0.3
2,391,257	-		ABCV34_RS11225	0.40	-0.1
2,391,257	-		ABCV34_RS11225	0.40	-0.7
2,391,257	-		ABCV34_RS11225	0.40	+0.2
2,391,335	+		ABCV34_RS11225	0.52	+1.0
2,391,336	-		ABCV34_RS11225	0.52	-2.6
2,391,370	+		ABCV34_RS11225	0.57	+0.3
2,391,370	+		ABCV34_RS11225	0.57	-1.4
2,391,370	+		ABCV34_RS11225	0.57	+1.4
2,391,370	+		ABCV34_RS11225	0.57	-3.1
2,391,370	+		ABCV34_RS11225	0.57	-2.3
2,391,371	-		ABCV34_RS11225	0.57	+0.6
2,391,371	-		ABCV34_RS11225	0.57	+0.4
2,391,371	-		ABCV34_RS11225	0.57	-2.6
2,391,371	-		ABCV34_RS11225	0.57	+0.8
2,391,433	+		ABCV34_RS11225	0.67	-1.8
2,391,433	+		ABCV34_RS11225	0.67	-0.1
2,391,433	+		ABCV34_RS11225	0.67	+1.4
2,391,519	+		ABCV34_RS11225	0.80	-0.1
2,391,519	+		ABCV34_RS11225	0.80	-0.5
2,391,519	+		ABCV34_RS11225	0.80	-1.1
2,391,520	-		ABCV34_RS11225	0.80	-1.6
2,391,520	-		ABCV34_RS11225	0.80	-0.5
2,391,520	-		ABCV34_RS11225	0.80	-2.7
2,391,733	+				-2.9
2,391,734	-				-1.7
2,391,738	+				-3.3
2,391,739	-				-2.8
2,391,756	+				-1.8
2,391,757	-				-2.6
2,391,832	+				+0.8
2,391,833	-				-1.5
2,391,833	-				-0.7
2,391,833	-				+0.1
2,391,890	+				-1.7
2,391,890	+				-1.6
2,391,890	+				-1.4
2,391,891	-				+1.8
2,391,891	-				-1.6
2,391,891	-				-0.8
2,391,891	-				+0.5
2,391,891	-				-1.2
2,391,891	-				-0.8
2,391,891	-				+0.8
2,391,922	+		ABCV34_RS11230	0.12	-3.1
2,391,922	+		ABCV34_RS11230	0.12	-2.7
2,391,922	+		ABCV34_RS11230	0.12	-0.3
2,392,064	-		ABCV34_RS11230	0.23	+0.4
2,392,096	+		ABCV34_RS11230	0.25	-2.0
2,392,096	+		ABCV34_RS11230	0.25	-1.6
2,392,096	+		ABCV34_RS11230	0.25	-1.0
2,392,096	+		ABCV34_RS11230	0.25	-0.0
2,392,096	+		ABCV34_RS11230	0.25	-2.4
2,392,096	+		ABCV34_RS11230	0.25	+0.4
2,392,097	-		ABCV34_RS11230	0.26	+0.1
2,392,097	-		ABCV34_RS11230	0.26	-0.2
2,392,097	-		ABCV34_RS11230	0.26	+1.6
2,392,097	-		ABCV34_RS11230	0.26	-0.4
2,392,097	-		ABCV34_RS11230	0.26	-0.2
2,392,151	+		ABCV34_RS11230	0.30	+2.0
2,392,159	+		ABCV34_RS11230	0.30	+0.2
2,392,159	+		ABCV34_RS11230	0.30	-2.3
2,392,159	+		ABCV34_RS11230	0.30	+1.1
2,392,159	+		ABCV34_RS11230	0.30	-2.0
2,392,159	+		ABCV34_RS11230	0.30	-0.2
2,392,160	-		ABCV34_RS11230	0.30	-0.0
2,392,160	-		ABCV34_RS11230	0.30	+0.2
2,392,160	-		ABCV34_RS11230	0.30	+0.8
2,392,160	-		ABCV34_RS11230	0.30	-0.6
2,392,160	-		ABCV34_RS11230	0.30	+0.2
2,392,364	-		ABCV34_RS11230	0.46	-0.6
2,392,417	+		ABCV34_RS11230	0.50	-0.8
2,392,417	+		ABCV34_RS11230	0.50	+1.5
2,392,417	+		ABCV34_RS11230	0.50	-1.9
2,392,417	+		ABCV34_RS11230	0.50	-0.8
2,392,417	+		ABCV34_RS11230	0.50	-0.6
2,392,417	+		ABCV34_RS11230	0.50	-0.5
2,392,418	-		ABCV34_RS11230	0.50	-2.6
2,392,418	-		ABCV34_RS11230	0.50	-1.2
2,392,418	-		ABCV34_RS11230	0.50	+1.8
2,392,418	-		ABCV34_RS11230	0.50	+0.8
2,392,418	-		ABCV34_RS11230	0.50	+1.0
2,392,418	-		ABCV34_RS11230	0.50	+2.8
2,392,538	+		ABCV34_RS11230	0.59	+0.9
2,392,538	+		ABCV34_RS11230	0.59	-1.1
2,392,538	+		ABCV34_RS11230	0.59	-0.9
2,392,538	+		ABCV34_RS11230	0.59	-2.1
2,392,538	+		ABCV34_RS11230	0.59	+0.9
2,392,538	+		ABCV34_RS11230	0.59	+0.8
2,392,538	+		ABCV34_RS11230	0.59	-1.8
2,392,538	+		ABCV34_RS11230	0.59	+2.4
2,392,538	+		ABCV34_RS11230	0.59	-0.7
2,392,538	+		ABCV34_RS11230	0.59	-1.2
2,392,538	+		ABCV34_RS11230	0.59	-0.7
2,392,538	+		ABCV34_RS11230	0.59	-1.1
2,392,538	+		ABCV34_RS11230	0.59	-1.4
2,392,538	+		ABCV34_RS11230	0.59	+1.8
2,392,538	+		ABCV34_RS11230	0.59	+0.8
2,392,538	+		ABCV34_RS11230	0.59	-2.3
2,392,538	+		ABCV34_RS11230	0.59	+0.1
2,392,538	+		ABCV34_RS11230	0.59	-1.0
2,392,539	-		ABCV34_RS11230	0.59	+0.9
2,392,539	-		ABCV34_RS11230	0.59	-2.2
2,392,539	-		ABCV34_RS11230	0.59	+1.8
2,392,539	-		ABCV34_RS11230	0.59	+1.0
2,392,539	-		ABCV34_RS11230	0.59	+0.4
2,392,539	-		ABCV34_RS11230	0.59	-2.1
2,392,539	-		ABCV34_RS11230	0.59	-0.3
2,392,539	-		ABCV34_RS11230	0.59	+1.8
2,392,539	-		ABCV34_RS11230	0.59	-0.8
2,392,539	-		ABCV34_RS11230	0.59	+0.2
2,392,539	-		ABCV34_RS11230	0.59	+1.0
2,392,539	-		ABCV34_RS11230	0.59	+1.0
2,392,600	+		ABCV34_RS11230	0.64	-0.2
2,392,600	+		ABCV34_RS11230	0.64	-0.2
2,392,600	+		ABCV34_RS11230	0.64	-0.8
2,392,600	+		ABCV34_RS11230	0.64	+0.4
2,392,601	-		ABCV34_RS11230	0.64	-2.9