Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10925

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,323,383	-		ABCV34_RS10915	0.89	-1.0
2,323,384	+		ABCV34_RS10915	0.89	-0.2
2,323,384	+		ABCV34_RS10915	0.89	-0.5
2,323,384	+		ABCV34_RS10915	0.89	-0.5
2,323,385	-		ABCV34_RS10915	0.89	-1.2
2,323,385	-		ABCV34_RS10915	0.89	-0.2
2,323,385	-		ABCV34_RS10915	0.89	-1.0
2,323,385	-		ABCV34_RS10915	0.89	-2.9
2,323,455	+				-0.3
2,323,455	+				+0.8
2,323,456	-				+0.2
2,323,534	+				-3.5
2,323,534	+				-0.5
2,323,534	+				-1.5
2,323,588	-				-1.0
2,323,588	-				-0.3
2,323,588	-				-2.9
2,323,588	-				+0.9
2,323,709	-		ABCV34_RS10920	0.24	+1.8
2,323,709	-		ABCV34_RS10920	0.24	+0.0
2,323,721	-		ABCV34_RS10920	0.25	+0.7
2,323,734	+		ABCV34_RS10920	0.27	-1.9
2,323,734	+		ABCV34_RS10920	0.27	-3.4
2,323,734	+		ABCV34_RS10920	0.27	-0.1
2,323,734	+		ABCV34_RS10920	0.27	-0.8
2,323,734	+		ABCV34_RS10920	0.27	-0.4
2,323,734	+		ABCV34_RS10920	0.27	+2.9
2,323,734	+		ABCV34_RS10920	0.27	+0.8
2,323,735	-		ABCV34_RS10920	0.28	-1.8
2,323,735	-		ABCV34_RS10920	0.28	-1.2
2,323,735	-		ABCV34_RS10920	0.28	+1.3
2,323,735	-		ABCV34_RS10920	0.28	-0.4
2,323,735	-		ABCV34_RS10920	0.28	-0.2
2,323,735	-		ABCV34_RS10920	0.28	-0.0
2,323,735	-		ABCV34_RS10920	0.28	-0.4
2,323,823	+		ABCV34_RS10920	0.41	+0.6
2,323,824	-		ABCV34_RS10920	0.41	-0.4
2,323,824	-		ABCV34_RS10920	0.41	-1.0
2,323,833	+		ABCV34_RS10920	0.42	+1.1
2,323,834	-		ABCV34_RS10920	0.43	-0.3
2,323,834	-		ABCV34_RS10920	0.43	-1.2
2,324,044	+		ABCV34_RS10920	0.74	+0.8
2,324,044	+		ABCV34_RS10920	0.74	-0.6
2,324,044	+		ABCV34_RS10920	0.74	-1.7
2,324,044	+		ABCV34_RS10920	0.74	-1.9
2,324,044	+		ABCV34_RS10920	0.74	-2.8
2,324,044	+		ABCV34_RS10920	0.74	-1.9
2,324,045	-		ABCV34_RS10920	0.75	-0.9
2,324,045	-		ABCV34_RS10920	0.75	-0.0
2,324,055	+		ABCV34_RS10920	0.76	+1.8
2,324,055	+		ABCV34_RS10920	0.76	+0.9
2,324,056	-		ABCV34_RS10920	0.76	-0.9
2,324,056	-		ABCV34_RS10920	0.76	-1.7
2,324,056	-		ABCV34_RS10920	0.76	-2.6
2,324,273	+				-0.0
2,324,273	+				+0.1
2,324,273	+				+1.1
2,324,274	-				+0.2
2,324,274	-				+0.8
2,324,274	-				-0.5
2,324,274	-				+1.8
2,324,274	-				+0.3
2,324,274	-				-1.8
2,324,276	+				+0.5
2,324,276	+				-1.7
2,324,276	+				+0.7
2,324,276	+				-1.1
2,324,276	+				-1.7
2,324,276	+				-1.9
2,324,277	-				-0.1
2,324,277	-				+1.5
2,324,354	+		ABCV34_RS10925	0.12	+0.8
2,324,355	-		ABCV34_RS10925	0.12	-1.4
2,324,355	-		ABCV34_RS10925	0.12	+0.8
2,324,355	-		ABCV34_RS10925	0.12	-0.2
2,324,355	-		ABCV34_RS10925	0.12	-1.4
2,324,516	+		ABCV34_RS10925	0.25	-1.2
2,324,516	+		ABCV34_RS10925	0.25	+0.3
2,324,516	+		ABCV34_RS10925	0.25	-0.3
2,324,517	-		ABCV34_RS10925	0.25	+1.0
2,324,517	-		ABCV34_RS10925	0.25	-2.7
2,324,517	-		ABCV34_RS10925	0.25	+0.3
2,324,517	-		ABCV34_RS10925	0.25	-2.1
2,324,517	-		ABCV34_RS10925	0.25	-1.2
2,324,517	-		ABCV34_RS10925	0.25	-1.7
2,324,522	-		ABCV34_RS10925	0.25	-2.0
2,324,522	-		ABCV34_RS10925	0.25	-1.0
2,324,522	-		ABCV34_RS10925	0.25	-2.4
2,324,543	+		ABCV34_RS10925	0.27	-1.5
2,324,543	+		ABCV34_RS10925	0.27	+0.9
2,324,543	+		ABCV34_RS10925	0.27	+0.5
2,324,543	+		ABCV34_RS10925	0.27	+1.0
2,324,543	+		ABCV34_RS10925	0.27	+0.2
2,324,543	+		ABCV34_RS10925	0.27	-1.1
2,324,543	+		ABCV34_RS10925	0.27	-0.2
2,324,544	-		ABCV34_RS10925	0.27	-0.5
2,324,544	-		ABCV34_RS10925	0.27	+0.7
2,324,544	-		ABCV34_RS10925	0.27	-0.8
2,324,544	-		ABCV34_RS10925	0.27	+0.8
2,324,544	-		ABCV34_RS10925	0.27	-0.1
2,324,547	+		ABCV34_RS10925	0.27	-3.1
2,324,547	+		ABCV34_RS10925	0.27	-1.3
2,324,547	+		ABCV34_RS10925	0.27	-2.0
2,324,547	+		ABCV34_RS10925	0.27	+0.6
2,324,547	+		ABCV34_RS10925	0.27	+0.8
2,324,547	+		ABCV34_RS10925	0.27	+0.6
2,324,547	+		ABCV34_RS10925	0.27	+0.2
2,324,547	+		ABCV34_RS10925	0.27	-0.2
2,324,548	-		ABCV34_RS10925	0.27	+0.2
2,324,548	-		ABCV34_RS10925	0.27	-1.7
2,324,548	-		ABCV34_RS10925	0.27	-0.8
2,324,548	-		ABCV34_RS10925	0.27	-0.5
2,324,548	-		ABCV34_RS10925	0.27	-0.2
2,324,548	-		ABCV34_RS10925	0.27	-0.4
2,324,548	-		ABCV34_RS10925	0.27	-1.7
2,324,548	-		ABCV34_RS10925	0.27	+0.2
2,324,548	-		ABCV34_RS10925	0.27	-1.5
2,324,548	-		ABCV34_RS10925	0.27	+1.2
2,324,594	+		ABCV34_RS10925	0.31	-1.8
2,324,594	+		ABCV34_RS10925	0.31	-0.6
2,324,594	+		ABCV34_RS10925	0.31	-0.1
2,324,594	+		ABCV34_RS10925	0.31	-2.0
2,324,594	+		ABCV34_RS10925	0.31	+1.5
2,324,595	-		ABCV34_RS10925	0.31	-0.3
2,324,595	-		ABCV34_RS10925	0.31	+1.2
2,324,621	+		ABCV34_RS10925	0.33	+0.8
2,324,621	+		ABCV34_RS10925	0.33	-0.5
2,324,621	+		ABCV34_RS10925	0.33	-0.2
2,324,622	-		ABCV34_RS10925	0.33	-0.2
2,324,622	-		ABCV34_RS10925	0.33	+3.8
2,324,622	-		ABCV34_RS10925	0.33	-0.2
2,324,622	-		ABCV34_RS10925	0.33	-3.0
2,324,627	+		ABCV34_RS10925	0.34	-1.9
2,324,627	+		ABCV34_RS10925	0.34	-1.2
2,324,627	+		ABCV34_RS10925	0.34	-1.0
2,324,627	+		ABCV34_RS10925	0.34	-0.6
2,324,627	+		ABCV34_RS10925	0.34	-0.8
2,324,627	+		ABCV34_RS10925	0.34	+0.4
2,324,627	+		ABCV34_RS10925	0.34	+1.8
2,324,627	+		ABCV34_RS10925	0.34	+0.2
2,324,627	+		ABCV34_RS10925	0.34	+0.2
2,324,628	-		ABCV34_RS10925	0.34	-2.0
2,324,628	-		ABCV34_RS10925	0.34	+0.0
2,324,628	-		ABCV34_RS10925	0.34	-2.6
2,324,628	-		ABCV34_RS10925	0.34	-0.5
2,324,628	-		ABCV34_RS10925	0.34	+1.8
2,324,628	-		ABCV34_RS10925	0.34	-0.9
2,324,628	-		ABCV34_RS10925	0.34	-1.0
2,324,628	-		ABCV34_RS10925	0.34	-0.3
2,324,628	-		ABCV34_RS10925	0.34	+0.8
2,324,628	-		ABCV34_RS10925	0.34	-1.1
2,324,633	+		ABCV34_RS10925	0.34	+0.2
2,324,633	+		ABCV34_RS10925	0.34	-0.0
2,324,634	-		ABCV34_RS10925	0.34	+1.3
2,324,702	+		ABCV34_RS10925	0.40	-0.4
2,324,702	+		ABCV34_RS10925	0.40	-2.0
2,324,702	+		ABCV34_RS10925	0.40	-2.1
2,324,703	-		ABCV34_RS10925	0.40	-0.1
2,324,706	+		ABCV34_RS10925	0.40	-1.7
2,324,706	+		ABCV34_RS10925	0.40	-0.8
2,324,706	+		ABCV34_RS10925	0.40	-1.2
2,324,706	+		ABCV34_RS10925	0.40	-1.2
2,324,706	+		ABCV34_RS10925	0.40	+1.0
2,324,706	+		ABCV34_RS10925	0.40	-0.2
2,324,706	+		ABCV34_RS10925	0.40	+1.1
2,324,706	+		ABCV34_RS10925	0.40	+0.8
2,324,706	+		ABCV34_RS10925	0.40	+1.8
2,324,706	+		ABCV34_RS10925	0.40	+0.9
2,324,706	+		ABCV34_RS10925	0.40	+0.8
2,324,706	+		ABCV34_RS10925	0.40	+2.8
2,324,706	+		ABCV34_RS10925	0.40	-1.1
2,324,706	+		ABCV34_RS10925	0.40	+0.8
2,324,706	+		ABCV34_RS10925	0.40	+2.8
2,324,706	+		ABCV34_RS10925	0.40	-1.0
2,324,706	+		ABCV34_RS10925	0.40	-0.2
2,324,706	+		ABCV34_RS10925	0.40	-1.1
2,324,706	+		ABCV34_RS10925	0.40	-0.2
2,324,706	+		ABCV34_RS10925	0.40	-1.5
2,324,707	-		ABCV34_RS10925	0.40	+0.4
2,324,707	-		ABCV34_RS10925	0.40	-0.6
2,324,707	-		ABCV34_RS10925	0.40	+0.3
2,324,707	-		ABCV34_RS10925	0.40	+0.2
2,324,707	-		ABCV34_RS10925	0.40	+0.4
2,324,707	-		ABCV34_RS10925	0.40	-0.2
2,324,707	-		ABCV34_RS10925	0.40	-1.6
2,324,707	-		ABCV34_RS10925	0.40	-0.2
2,324,707	-		ABCV34_RS10925	0.40	+2.4
2,324,707	-		ABCV34_RS10925	0.40	+0.6
2,324,707	-		ABCV34_RS10925	0.40	+0.7
2,324,707	-		ABCV34_RS10925	0.40	-1.8
2,324,707	-		ABCV34_RS10925	0.40	-2.6
2,324,707	-		ABCV34_RS10925	0.40	-2.5
2,324,765	+		ABCV34_RS10925	0.45	+0.8
2,324,765	+		ABCV34_RS10925	0.45	-2.2
2,324,765	+		ABCV34_RS10925	0.45	-0.4
2,324,765	+		ABCV34_RS10925	0.45	-0.4
2,324,765	+		ABCV34_RS10925	0.45	+2.8
2,324,765	+		ABCV34_RS10925	0.45	+0.2
2,324,765	+		ABCV34_RS10925	0.45	-0.2
2,324,765	+		ABCV34_RS10925	0.45	-1.2
2,324,765	+		ABCV34_RS10925	0.45	-1.0
2,324,765	+		ABCV34_RS10925	0.45	+0.8
2,324,766	-		ABCV34_RS10925	0.45	+1.8
2,324,766	-		ABCV34_RS10925	0.45	+0.5
2,324,766	-		ABCV34_RS10925	0.45	+0.9
2,324,766	-		ABCV34_RS10925	0.45	-1.9
2,324,766	-		ABCV34_RS10925	0.45	-0.5
2,324,766	-		ABCV34_RS10925	0.45	+0.8
2,324,766	-		ABCV34_RS10925	0.45	+2.0
2,324,766	-		ABCV34_RS10925	0.45	-0.3
2,324,766	-		ABCV34_RS10925	0.45	+0.9
2,324,766	-		ABCV34_RS10925	0.45	+0.1
2,324,768	+		ABCV34_RS10925	0.45	+0.8
2,324,768	+		ABCV34_RS10925	0.45	-2.3
2,324,768	+		ABCV34_RS10925	0.45	+0.5
2,324,768	+		ABCV34_RS10925	0.45	-2.3
2,324,768	+		ABCV34_RS10925	0.45	+0.9
2,324,768	+		ABCV34_RS10925	0.45	-0.1
2,324,768	+		ABCV34_RS10925	0.45	+0.4
2,324,768	+		ABCV34_RS10925	0.45	+1.9
2,324,769	-		ABCV34_RS10925	0.45	+0.2
2,324,769	-		ABCV34_RS10925	0.45	+0.4
2,324,769	-		ABCV34_RS10925	0.45	-1.8
2,324,769	-		ABCV34_RS10925	0.45	+0.1
2,324,769	-		ABCV34_RS10925	0.45	+1.8
2,324,769	-		ABCV34_RS10925	0.45	+1.2
2,324,769	-		ABCV34_RS10925	0.45	-2.1
2,325,046	-		ABCV34_RS10925	0.67	-1.8
2,325,278	+		ABCV34_RS10925	0.86	-1.2
2,325,279	-		ABCV34_RS10925	0.86	+0.5
2,325,297	+		ABCV34_RS10925	0.87	+0.3
2,325,297	+		ABCV34_RS10925	0.87	-0.3
2,325,297	+		ABCV34_RS10925	0.87	+0.2
2,325,297	+		ABCV34_RS10925	0.87	+0.3
2,325,298	-		ABCV34_RS10925	0.87	+0.1
2,325,298	-		ABCV34_RS10925	0.87	+1.6
2,325,298	-		ABCV34_RS10925	0.87	-1.3
2,325,298	-		ABCV34_RS10925	0.87	-0.0
2,325,299	+		ABCV34_RS10925	0.88	-0.8
2,325,300	-		ABCV34_RS10925	0.88	-2.8
2,325,368	+				-0.2
2,325,368	+				-1.4
2,325,368	+				-1.3
2,325,369	-				+0.3
2,325,369	-				+1.5
2,325,369	-				-0.1
2,325,369	-				+0.8
2,325,465	+				-1.3
2,325,465	+				+1.8
2,325,465	+				-1.7
2,325,465	+				-1.1
2,325,465	+				-2.0
2,325,466	-				-1.2
2,325,466	-				-0.9
2,325,466	-				+0.1
2,325,475	+				-0.9
2,325,476	-				-1.2
2,325,476	-				-1.5
2,325,529	+				-0.1
2,325,529	+				+0.6
2,325,530	-				-0.8
2,325,530	-				-0.5
2,325,530	-				-0.8
2,325,530	-				+0.4
2,325,530	-				-0.2
2,325,530	-				-0.4
2,325,530	-				-4.3
2,325,530	-				-3.2
2,325,530	-				-2.3
2,325,530	-				-0.8
2,325,655	+				-3.8
2,325,655	+				-0.1
2,325,668	-				+1.8
2,325,681	+				-0.1
2,325,681	+				-3.2
2,325,682	-				-1.6
2,325,682	-				-0.3
2,325,699	+				-1.7
2,325,700	-				+0.3
2,325,760	+		ABCV34_RS10930	0.16	-1.5
2,325,760	+		ABCV34_RS10930	0.16	-1.8
2,325,760	+		ABCV34_RS10930	0.16	-1.6
2,325,760	+		ABCV34_RS10930	0.16	-1.4
2,325,761	-		ABCV34_RS10930	0.16	+0.9
2,325,761	-		ABCV34_RS10930	0.16	-1.0
2,325,761	-		ABCV34_RS10930	0.16	-1.3
2,325,761	-		ABCV34_RS10930	0.16	-0.7
2,325,761	-		ABCV34_RS10930	0.16	-0.9
2,325,761	-		ABCV34_RS10930	0.16	-2.5
2,325,761	-		ABCV34_RS10930	0.16	-2.0
2,325,957	+				-1.7
2,325,957	+				-1.4
2,325,957	+				-2.8
2,325,958	-				-2.4
2,325,958	-				-0.8
2,325,958	-				-1.4
2,325,968	+				-1.2
2,325,968	+				-0.4
2,325,969	-				-0.5
2,325,993	-				-2.2