Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS10410

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,225,530	-		ABCV34_RS10405	0.55	+0.1
2,225,530	-		ABCV34_RS10405	0.55	-0.1
2,225,616	+		ABCV34_RS10405	0.59	+1.8
2,225,616	+		ABCV34_RS10405	0.59	+0.2
2,225,616	+		ABCV34_RS10405	0.59	+0.5
2,225,616	+		ABCV34_RS10405	0.59	-1.6
2,225,617	-		ABCV34_RS10405	0.59	-1.5
2,225,617	-		ABCV34_RS10405	0.59	+0.9
2,225,617	-		ABCV34_RS10405	0.59	+0.7
2,225,776	+		ABCV34_RS10405	0.67	-0.8
2,225,777	-		ABCV34_RS10405	0.67	-0.4
2,225,779	-		ABCV34_RS10405	0.67	-0.0
2,225,880	+		ABCV34_RS10405	0.72	-1.5
2,226,048	+		ABCV34_RS10405	0.80	-0.2
2,226,048	+		ABCV34_RS10405	0.80	+2.1
2,226,048	+		ABCV34_RS10405	0.80	+0.5
2,226,049	-		ABCV34_RS10405	0.80	-0.3
2,226,049	-		ABCV34_RS10405	0.80	+0.2
2,226,049	-		ABCV34_RS10405	0.80	-0.1
2,226,120	+		ABCV34_RS10405	0.84	-0.7
2,226,120	+		ABCV34_RS10405	0.84	+0.1
2,226,120	+		ABCV34_RS10405	0.84	-0.3
2,226,120	+		ABCV34_RS10405	0.84	-3.8
2,226,120	+		ABCV34_RS10405	0.84	+0.4
2,226,120	+		ABCV34_RS10405	0.84	+0.0
2,226,120	+		ABCV34_RS10405	0.84	+0.4
2,226,121	-		ABCV34_RS10405	0.84	+0.3
2,226,121	-		ABCV34_RS10405	0.84	+2.0
2,226,121	-		ABCV34_RS10405	0.84	+0.6
2,226,357	+				-0.8
2,226,357	+				+0.2
2,226,358	-				+0.3
2,226,361	-				+0.0
2,226,361	-				-2.6
2,226,413	+				+0.0
2,226,565	-				+2.2
2,226,606	+		ABCV34_RS10410	0.11	+1.0
2,226,606	+		ABCV34_RS10410	0.11	-1.8
2,226,606	+		ABCV34_RS10410	0.11	-0.8
2,226,606	+		ABCV34_RS10410	0.11	-0.1
2,226,606	+		ABCV34_RS10410	0.11	+0.4
2,226,606	+		ABCV34_RS10410	0.11	-1.4
2,226,606	+		ABCV34_RS10410	0.11	+1.2
2,226,607	-		ABCV34_RS10410	0.11	+0.6
2,226,607	-		ABCV34_RS10410	0.11	+0.4
2,226,607	-		ABCV34_RS10410	0.11	+0.8
2,226,607	-		ABCV34_RS10410	0.11	-1.9
2,226,607	-		ABCV34_RS10410	0.11	-1.0
2,226,607	-		ABCV34_RS10410	0.11	-0.6
2,226,607	-		ABCV34_RS10410	0.11	-1.6
2,226,607	-		ABCV34_RS10410	0.11	+1.4
2,226,607	-		ABCV34_RS10410	0.11	-2.0
2,226,607	-		ABCV34_RS10410	0.11	-0.9
2,226,607	-		ABCV34_RS10410	0.11	-0.5
2,226,609	+		ABCV34_RS10410	0.11	-1.4
2,226,609	+		ABCV34_RS10410	0.11	+0.3
2,226,610	-		ABCV34_RS10410	0.12	-1.0
2,226,610	-		ABCV34_RS10410	0.12	-0.9
2,226,705	+		ABCV34_RS10410	0.19	+0.0
2,226,706	-		ABCV34_RS10410	0.19	-0.5
2,226,759	+		ABCV34_RS10410	0.23	-0.1
2,226,759	+		ABCV34_RS10410	0.23	+0.6
2,226,759	+		ABCV34_RS10410	0.23	+0.3
2,226,759	+		ABCV34_RS10410	0.23	+0.6
2,226,927	+		ABCV34_RS10410	0.35	+0.1
2,226,928	-		ABCV34_RS10410	0.35	+0.7
2,226,928	-		ABCV34_RS10410	0.35	-0.9
2,226,978	+		ABCV34_RS10410	0.39	-0.1
2,226,978	+		ABCV34_RS10410	0.39	+0.7
2,226,978	+		ABCV34_RS10410	0.39	-0.0
2,226,978	+		ABCV34_RS10410	0.39	-2.4
2,226,978	+		ABCV34_RS10410	0.39	-0.5
2,226,979	-		ABCV34_RS10410	0.39	+0.2
2,226,979	-		ABCV34_RS10410	0.39	+0.0
2,226,979	-		ABCV34_RS10410	0.39	-1.6
2,226,979	-		ABCV34_RS10410	0.39	-3.0
2,226,979	-		ABCV34_RS10410	0.39	-0.1
2,226,979	-		ABCV34_RS10410	0.39	-0.1
2,226,979	-		ABCV34_RS10410	0.39	-1.6
2,226,979	-		ABCV34_RS10410	0.39	-1.8
2,226,979	-		ABCV34_RS10410	0.39	+1.6
2,226,979	-		ABCV34_RS10410	0.39	+0.2
2,226,979	-		ABCV34_RS10410	0.39	-1.6
2,226,979	-		ABCV34_RS10410	0.39	+0.8
2,227,125	+		ABCV34_RS10410	0.50	-2.9
2,227,125	+		ABCV34_RS10410	0.50	+0.3
2,227,126	-		ABCV34_RS10410	0.50	-0.1
2,227,126	-		ABCV34_RS10410	0.50	-0.3
2,227,126	-		ABCV34_RS10410	0.50	-0.6
2,227,126	-		ABCV34_RS10410	0.50	-2.3
2,227,126	-		ABCV34_RS10410	0.50	-0.7
2,227,126	-		ABCV34_RS10410	0.50	-1.9
2,227,431	+		ABCV34_RS10410	0.73	-0.9
2,227,432	-		ABCV34_RS10410	0.73	+0.4
2,227,432	-		ABCV34_RS10410	0.73	-1.6
2,227,432	-		ABCV34_RS10410	0.73	-0.5
2,227,480	+		ABCV34_RS10410	0.77	+0.2
2,227,481	-		ABCV34_RS10410	0.77	-1.7
2,227,481	-		ABCV34_RS10410	0.77	+1.8
2,227,495	+		ABCV34_RS10410	0.78	-0.4
2,227,495	+		ABCV34_RS10410	0.78	-1.0
2,227,496	-		ABCV34_RS10410	0.78	-0.1
2,227,496	-		ABCV34_RS10410	0.78	-1.7
2,227,496	-		ABCV34_RS10410	0.78	+0.7
2,227,496	-		ABCV34_RS10410	0.78	-3.3
2,227,507	+		ABCV34_RS10410	0.79	+0.1
2,227,507	+		ABCV34_RS10410	0.79	-0.4
2,227,618	-		ABCV34_RS10410	0.87	-1.0
2,227,644	+		ABCV34_RS10410	0.89	-0.2
2,227,645	-		ABCV34_RS10410	0.89	+0.3
2,227,874	+		ABCV34_RS10415	0.17	+0.3
2,227,874	+		ABCV34_RS10415	0.17	-0.9
2,227,874	+		ABCV34_RS10415	0.17	+0.2
2,227,875	-		ABCV34_RS10415	0.17	-0.5
2,227,875	-		ABCV34_RS10415	0.17	+0.6
2,227,875	-		ABCV34_RS10415	0.17	+0.1
2,227,979	+		ABCV34_RS10415	0.39	-1.8
2,227,979	+		ABCV34_RS10415	0.39	-1.8
2,227,979	+		ABCV34_RS10415	0.39	+0.3
2,227,980	-		ABCV34_RS10415	0.39	+0.2
2,227,980	-		ABCV34_RS10415	0.39	-0.2
2,227,980	-		ABCV34_RS10415	0.39	+0.1
2,227,980	-		ABCV34_RS10415	0.39	-1.3
2,227,981	+		ABCV34_RS10415	0.39	-0.6
2,227,981	+		ABCV34_RS10415	0.39	-0.4
2,227,981	+		ABCV34_RS10415	0.39	-1.6
2,227,981	+		ABCV34_RS10415	0.39	-2.5
2,227,981	+		ABCV34_RS10415	0.39	+0.4
2,227,981	+		ABCV34_RS10415	0.39	+0.9
2,227,981	+		ABCV34_RS10415	0.39	+0.9
2,227,981	+		ABCV34_RS10415	0.39	-0.3
2,227,982	-		ABCV34_RS10415	0.40	+1.4
2,227,982	-		ABCV34_RS10415	0.40	+0.6
2,227,982	-		ABCV34_RS10415	0.40	+0.6
2,228,030	+		ABCV34_RS10415	0.49	+0.2
2,228,030	+		ABCV34_RS10415	0.49	+1.8
2,228,030	+		ABCV34_RS10415	0.49	+1.6
2,228,030	+		ABCV34_RS10415	0.49	-0.5
2,228,030	+		ABCV34_RS10415	0.49	+1.8
2,228,030	+		ABCV34_RS10415	0.49	+0.5
2,228,030	+		ABCV34_RS10415	0.49	+0.1
2,228,030	+		ABCV34_RS10415	0.49	+0.5
2,228,030	+		ABCV34_RS10415	0.49	+0.3
2,228,031	-		ABCV34_RS10415	0.50	+1.4
2,228,031	-		ABCV34_RS10415	0.50	+0.0
2,228,031	-		ABCV34_RS10415	0.50	+0.0
2,228,031	-		ABCV34_RS10415	0.50	+0.4
2,228,144	-		ABCV34_RS10415	0.73	-2.1
2,228,144	-		ABCV34_RS10415	0.73	+2.1
2,228,161	+		ABCV34_RS10415	0.76	-2.3
2,228,161	+		ABCV34_RS10415	0.76	+1.1
2,228,161	+		ABCV34_RS10415	0.76	-1.0
2,228,162	-		ABCV34_RS10415	0.77	-1.8
2,228,162	-		ABCV34_RS10415	0.77	+1.3
2,228,162	-		ABCV34_RS10415	0.77	+0.3
2,228,162	-		ABCV34_RS10415	0.77	-1.4
2,228,162	-		ABCV34_RS10415	0.77	+1.2
2,228,170	+		ABCV34_RS10415	0.78	-3.0
2,228,170	+		ABCV34_RS10415	0.78	-2.1
2,228,171	-		ABCV34_RS10415	0.78	+0.3
2,228,171	-		ABCV34_RS10415	0.78	+0.2
2,228,171	-		ABCV34_RS10415	0.78	-0.1
2,228,171	-		ABCV34_RS10415	0.78	-2.7
2,228,171	-		ABCV34_RS10415	0.78	+2.8
2,228,171	-		ABCV34_RS10415	0.78	-0.8
2,228,295	+				-1.6
2,228,295	+				-0.5
2,228,296	-				+1.1
2,228,310	+				-1.2
2,228,310	+				-0.4
2,228,310	+				-0.7
2,228,310	+				-1.4
2,228,311	-				-0.8
2,228,335	+				-0.2
2,228,335	+				-2.3
2,228,335	+				-1.9
2,228,335	+				+1.8
2,228,335	+				-2.6
2,228,335	+				-0.5
2,228,335	+				-1.8
2,228,335	+				+1.8
2,228,335	+				+0.8
2,228,336	-				-0.2
2,228,336	-				-0.2
2,228,336	-				-2.1
2,228,336	-				-2.1
2,228,336	-				-1.3
2,228,357	+				+0.1
2,228,358	-				-2.4
2,228,367	+				-0.7
2,228,367	+				-2.3
2,228,367	+				-1.9
2,228,367	+				-0.4
2,228,367	+				-0.9
2,228,367	+				+1.1
2,228,367	+				-0.2
2,228,367	+				-1.5
2,228,367	+				-0.7
2,228,368	-				+1.8
2,228,368	-				-0.1
2,228,368	-				+0.2
2,228,368	-				+0.5
2,228,368	-				-2.1
2,228,368	-				+1.4
2,228,368	-				-0.7
2,228,368	-				-1.0
2,228,387	+				-1.2
2,228,397	+				-0.3
2,228,397	+				+0.0
2,228,397	+				-0.3
2,228,397	+				-0.4
2,228,397	+				+0.2
2,228,398	-				-0.8
2,228,398	-				-2.6
2,228,398	-				-1.0
2,228,398	-				-1.3
2,228,398	-				+0.8
2,228,398	-				-0.0
2,228,400	+				+1.2
2,228,400	+				-0.1
2,228,400	+				-1.5
2,228,400	+				+1.7
2,228,400	+				-2.2
2,228,400	+				-1.3
2,228,400	+				-1.4
2,228,400	+				-0.8
2,228,400	+				-0.8
2,228,401	-				-0.6
2,228,401	-				+2.1
2,228,401	-				+1.4
2,228,401	-				-1.3
2,228,401	-				+0.4
2,228,401	-				-0.5
2,228,401	-				-1.8
2,228,401	-				-0.1
2,228,401	-				-0.2
2,228,401	-				-1.7
2,228,401	-				-0.7
2,228,401	-				+0.2
2,228,401	-				+0.2
2,228,401	-				+0.7
2,228,401	-				-0.5
2,228,473	+		ABCV34_RS10420	0.12	-1.8
2,228,473	+		ABCV34_RS10420	0.12	-1.0
2,228,474	-		ABCV34_RS10420	0.12	-0.8
2,228,474	-		ABCV34_RS10420	0.12	-1.5
2,228,474	-		ABCV34_RS10420	0.12	-0.2
2,228,545	+		ABCV34_RS10420	0.20	-0.0
2,228,587	+		ABCV34_RS10420	0.24	+0.3
2,228,587	+		ABCV34_RS10420	0.24	-2.1
2,228,588	-		ABCV34_RS10420	0.25	-2.0
2,228,636	-		ABCV34_RS10420	0.30	-0.5
2,228,636	-		ABCV34_RS10420	0.30	-1.5
2,228,671	+		ABCV34_RS10420	0.34	-1.1
2,228,671	+		ABCV34_RS10420	0.34	+0.1
2,228,671	+		ABCV34_RS10420	0.34	+0.2
2,228,671	+		ABCV34_RS10420	0.34	-0.3
2,228,671	+		ABCV34_RS10420	0.34	-0.8
2,228,672	-		ABCV34_RS10420	0.34	-2.3
2,228,672	-		ABCV34_RS10420	0.34	+0.0
2,228,672	-		ABCV34_RS10420	0.34	-0.9
2,228,672	-		ABCV34_RS10420	0.34	+0.5
2,228,672	-		ABCV34_RS10420	0.34	+0.8
2,228,683	+		ABCV34_RS10420	0.35	-4.0
2,228,683	+		ABCV34_RS10420	0.35	-0.7
2,228,683	+		ABCV34_RS10420	0.35	-2.6
2,228,683	+		ABCV34_RS10420	0.35	-2.1
2,228,684	-		ABCV34_RS10420	0.35	-0.1
2,228,684	-		ABCV34_RS10420	0.35	+2.1
2,228,684	-		ABCV34_RS10420	0.35	-0.0
2,228,684	-		ABCV34_RS10420	0.35	-1.3
2,228,684	-		ABCV34_RS10420	0.35	-1.3