Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS08650

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
1,841,927	+				-0.7
1,841,927	+				+0.8
1,841,927	+				-0.9
1,841,928	-				-1.9
1,841,928	-				-1.3
1,841,928	-				-0.6
1,841,928	-				-2.8
1,841,928	-				+0.4
1,841,928	-				-1.4
1,841,928	-				+0.1
1,841,928	-				-1.1
1,842,010	+				-1.7
1,842,010	+				+0.2
1,842,010	+				-0.7
1,842,010	+				-1.0
1,842,011	-				+0.1
1,842,037	+		ABCV34_RS08645	0.12	-0.9
1,842,037	+		ABCV34_RS08645	0.12	-1.6
1,842,037	+		ABCV34_RS08645	0.12	-2.0
1,842,037	+		ABCV34_RS08645	0.12	+0.3
1,842,037	+		ABCV34_RS08645	0.12	-3.1
1,842,038	-		ABCV34_RS08645	0.12	-0.3
1,842,038	-		ABCV34_RS08645	0.12	+0.3
1,842,038	-		ABCV34_RS08645	0.12	+0.9
1,842,038	-		ABCV34_RS08645	0.12	-1.8
1,842,038	-		ABCV34_RS08645	0.12	+2.1
1,842,038	-		ABCV34_RS08645	0.12	-1.8
1,842,038	-		ABCV34_RS08645	0.12	+0.9
1,842,038	-		ABCV34_RS08645	0.12	-0.9
1,842,056	+		ABCV34_RS08645	0.15	-0.2
1,842,056	+		ABCV34_RS08645	0.15	-1.4
1,842,056	+		ABCV34_RS08645	0.15	-0.5
1,842,057	-		ABCV34_RS08645	0.15	-3.1
1,842,057	-		ABCV34_RS08645	0.15	-1.0
1,842,057	-		ABCV34_RS08645	0.15	-1.1
1,842,058	+		ABCV34_RS08645	0.15	-1.4
1,842,058	+		ABCV34_RS08645	0.15	-2.3
1,842,058	+		ABCV34_RS08645	0.15	-2.6
1,842,058	+		ABCV34_RS08645	0.15	+0.6
1,842,058	+		ABCV34_RS08645	0.15	-1.7
1,842,058	+		ABCV34_RS08645	0.15	+0.1
1,842,058	+		ABCV34_RS08645	0.15	-1.6
1,842,058	+		ABCV34_RS08645	0.15	+0.5
1,842,058	+		ABCV34_RS08645	0.15	+0.0
1,842,058	+		ABCV34_RS08645	0.15	-0.9
1,842,058	+		ABCV34_RS08645	0.15	-0.2
1,842,058	+		ABCV34_RS08645	0.15	-3.1
1,842,058	+		ABCV34_RS08645	0.15	-0.1
1,842,058	+		ABCV34_RS08645	0.15	-2.7
1,842,058	+		ABCV34_RS08645	0.15	+0.1
1,842,058	+		ABCV34_RS08645	0.15	+0.8
1,842,058	+		ABCV34_RS08645	0.15	-1.3
1,842,058	+		ABCV34_RS08645	0.15	-1.1
1,842,058	+		ABCV34_RS08645	0.15	-4.7
1,842,059	-		ABCV34_RS08645	0.15	+0.1
1,842,059	-		ABCV34_RS08645	0.15	-2.9
1,842,059	-		ABCV34_RS08645	0.15	+0.2
1,842,059	-		ABCV34_RS08645	0.15	-1.9
1,842,059	-		ABCV34_RS08645	0.15	+0.9
1,842,059	-		ABCV34_RS08645	0.15	-0.5
1,842,059	-		ABCV34_RS08645	0.15	-3.6
1,842,059	-		ABCV34_RS08645	0.15	-1.3
1,842,059	-		ABCV34_RS08645	0.15	+0.6
1,842,059	-		ABCV34_RS08645	0.15	-2.6
1,842,059	-		ABCV34_RS08645	0.15	+0.4
1,842,059	-		ABCV34_RS08645	0.15	-0.6
1,842,059	-		ABCV34_RS08645	0.15	-1.2
1,842,187	+		ABCV34_RS08645	0.34	-0.4
1,842,188	-		ABCV34_RS08645	0.34	-1.8
1,842,188	-		ABCV34_RS08645	0.34	+1.2
1,842,188	-		ABCV34_RS08645	0.34	-0.4
1,842,319	+		ABCV34_RS08645	0.54	-1.3
1,842,320	-		ABCV34_RS08645	0.54	-0.7
1,842,320	-		ABCV34_RS08645	0.54	-1.4
1,842,361	+		ABCV34_RS08645	0.60	-0.1
1,842,361	+		ABCV34_RS08645	0.60	-1.6
1,842,361	+		ABCV34_RS08645	0.60	-2.6
1,842,361	+		ABCV34_RS08645	0.60	-3.9
1,842,361	+		ABCV34_RS08645	0.60	-3.0
1,842,362	-		ABCV34_RS08645	0.60	+0.1
1,842,362	-		ABCV34_RS08645	0.60	-2.4
1,842,362	-		ABCV34_RS08645	0.60	-1.8
1,842,362	-		ABCV34_RS08645	0.60	-0.0
1,842,362	-		ABCV34_RS08645	0.60	-2.1
1,842,362	-		ABCV34_RS08645	0.60	-2.3
1,842,362	-		ABCV34_RS08645	0.60	-0.8
1,842,362	-		ABCV34_RS08645	0.60	+0.4
1,842,362	-		ABCV34_RS08645	0.60	-1.4
1,842,362	-		ABCV34_RS08645	0.60	+0.4
1,842,362	-		ABCV34_RS08645	0.60	-0.6
1,842,362	-		ABCV34_RS08645	0.60	-0.7
1,842,362	-		ABCV34_RS08645	0.60	-1.8
1,842,362	-		ABCV34_RS08645	0.60	-0.8
1,842,451	+		ABCV34_RS08645	0.73	+1.2
1,842,451	+		ABCV34_RS08645	0.73	-1.6
1,842,451	+		ABCV34_RS08645	0.73	+0.0
1,842,451	+		ABCV34_RS08645	0.73	+0.5
1,842,451	+		ABCV34_RS08645	0.73	+0.2
1,842,451	+		ABCV34_RS08645	0.73	-1.2
1,842,451	+		ABCV34_RS08645	0.73	-1.4
1,842,451	+		ABCV34_RS08645	0.73	+1.9
1,842,451	+		ABCV34_RS08645	0.73	-0.5
1,842,451	+		ABCV34_RS08645	0.73	-0.8
1,842,451	+		ABCV34_RS08645	0.73	-0.4
1,842,451	+		ABCV34_RS08645	0.73	-0.1
1,842,451	+		ABCV34_RS08645	0.73	+1.6
1,842,452	-		ABCV34_RS08645	0.74	-0.8
1,842,452	-		ABCV34_RS08645	0.74	+0.1
1,842,452	-		ABCV34_RS08645	0.74	-0.9
1,842,452	-		ABCV34_RS08645	0.74	-0.8
1,842,452	-		ABCV34_RS08645	0.74	-0.1
1,842,452	-		ABCV34_RS08645	0.74	-2.3
1,842,452	-		ABCV34_RS08645	0.74	-2.0
1,842,452	-		ABCV34_RS08645	0.74	-0.7
1,842,452	-		ABCV34_RS08645	0.74	-3.5
1,842,452	-		ABCV34_RS08645	0.74	+0.8
1,842,452	-		ABCV34_RS08645	0.74	-0.3
1,842,452	-		ABCV34_RS08645	0.74	+0.9
1,842,452	-		ABCV34_RS08645	0.74	-0.2
1,842,530	-		ABCV34_RS08645	0.85	-2.0
1,842,622	+				-0.1
1,842,622	+				-1.3
1,842,622	+				-0.6
1,842,622	+				-0.2
1,842,622	+				-1.0
1,842,622	+				+0.2
1,842,623	-				+0.3
1,842,623	-				-0.4
1,842,623	-				-4.3
1,842,623	-				-0.6
1,842,623	-				-1.1
1,842,623	-				+2.9
1,842,623	-				-1.8
1,842,623	-				-1.6
1,842,623	-				-1.0
1,842,623	-				-0.8
1,842,660	-				-1.1
1,842,679	-				-1.1
1,842,681	+				+1.0
1,842,681	+				-0.6
1,842,681	+				-3.0
1,842,681	+				-0.9
1,842,682	-				+0.7
1,842,682	-				+0.1
1,842,771	+				-3.5
1,842,771	+				-0.9
1,842,771	+				+0.7
1,842,771	+				-0.9
1,842,771	+				-2.2
1,842,771	+				+2.5
1,842,771	+				-2.5
1,842,771	+				-3.2
1,842,771	+				-0.1
1,842,772	-				+0.9
1,842,772	-				-2.4
1,842,772	-				-1.5
1,842,777	+				+0.4
1,842,777	+				-2.7
1,842,777	+				-1.4
1,842,777	+				-0.0
1,842,777	+				+0.3
1,842,777	+				-0.1
1,842,777	+				+0.3
1,842,777	+				-0.3
1,842,777	+				-2.4
1,842,778	-				-1.7
1,842,778	-				-0.4
1,842,778	-				-1.9
1,842,778	-				-1.0
1,842,952	+		ABCV34_RS08650	0.17	-0.8
1,842,952	+		ABCV34_RS08650	0.17	-1.3
1,842,953	-		ABCV34_RS08650	0.17	+0.2
1,842,953	-		ABCV34_RS08650	0.17	-1.8
1,843,454	-		ABCV34_RS08650	0.69	+2.2
1,843,454	-		ABCV34_RS08650	0.69	-1.3
1,843,576	+		ABCV34_RS08650	0.82	-0.3
1,843,659	-				-1.8
1,843,660	+				-1.6
1,843,660	+				-1.5
1,843,660	+				-2.8
1,843,661	-				-1.4
1,843,661	-				-2.3
1,843,661	-				-0.6
1,843,946	+				-0.5
1,843,946	+				+1.7
1,843,946	+				-1.9
1,843,946	+				-2.0
1,843,946	+				-0.7
1,843,946	+				-3.9
1,843,946	+				-1.8
1,843,947	-				+1.9
1,843,947	-				-2.6
1,843,947	-				+0.6
1,843,947	-				-0.5
1,843,947	-				+0.5
1,843,947	-				-0.2
1,843,947	-				-1.0
1,843,947	-				-3.2
1,843,948	+				-3.0
1,843,948	+				-0.5
1,843,948	+				-0.7
1,843,948	+				-0.6
1,843,949	-				-0.0
1,843,949	-				+0.4
1,844,078	+				-1.8
1,844,078	+				-2.1
1,844,079	-				+0.6
1,844,079	-				-1.9
1,844,082	+				-2.6
1,844,082	+				-0.5
1,844,083	-				-1.6
1,844,083	-				+0.1
1,844,083	-				+0.1
1,844,083	-				-2.0
1,844,083	-				-1.3
1,844,083	-				-1.7
1,844,083	-				-1.3
1,844,083	-				-2.2
1,844,084	+				-0.4
1,844,084	+				+0.1
1,844,084	+				-1.3
1,844,085	-				+0.4
1,844,085	-				-0.4
1,844,085	-				-0.4
1,844,085	-				-0.7
1,844,087	+				-2.7
1,844,087	+				-3.6
1,844,087	+				+0.3
1,844,087	+				-3.6
1,844,087	+				-3.4
1,844,087	+				-0.7
1,844,087	+				-1.6
1,844,087	+				+0.0
1,844,088	-				-0.8
1,844,088	-				-0.5
1,844,088	-				-0.4
1,844,088	-				+0.1
1,844,088	-				-1.7
1,844,088	-				-2.3
1,844,088	-				-0.8
1,844,088	-				-1.2
1,844,088	-				-1.1
1,844,088	-				-2.0
1,844,088	-				+0.6
1,844,088	-				+1.7
1,844,340	+		ABCV34_RS08655	0.29	+0.2
1,844,340	+		ABCV34_RS08655	0.29	-0.9
1,844,340	+		ABCV34_RS08655	0.29	-2.3
1,844,340	+		ABCV34_RS08655	0.29	-0.2
1,844,340	+		ABCV34_RS08655	0.29	-1.3
1,844,340	+		ABCV34_RS08655	0.29	-3.0
1,844,340	+		ABCV34_RS08655	0.29	-2.4
1,844,340	+		ABCV34_RS08655	0.29	-3.6
1,844,340	+		ABCV34_RS08655	0.29	-0.3
1,844,502	+		ABCV34_RS08655	0.48	+0.1
1,844,502	+		ABCV34_RS08655	0.48	+0.6
1,844,502	+		ABCV34_RS08655	0.48	-1.2
1,844,503	-		ABCV34_RS08655	0.48	-2.0
1,844,594	+		ABCV34_RS08655	0.59	-0.0
1,844,594	+		ABCV34_RS08655	0.59	-1.1
1,844,595	-		ABCV34_RS08655	0.59	-1.2