Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS07145 and ABCV34_RS07150 are separated by 91 nucleotides ABCV34_RS07150 and ABCV34_RS07155 are separated by 139 nucleotides ABCV34_RS07155 and ABCV34_RS07160 are separated by 74 nucleotides ABCV34_RS07160 and ABCV34_RS07165 are separated by 1 nucleotides
ABCV34_RS07145: ABCV34_RS07145 - DUF924 family protein, at 1,537,454 to 1,538,017
_RS07145
ABCV34_RS07150: ABCV34_RS07150 - carboxymuconolactone decarboxylase family protein, at 1,538,109 to 1,538,459
_RS07150
ABCV34_RS07155: ABCV34_RS07155 - RNA polymerase sigma factor, at 1,538,599 to 1,539,330
_RS07155
ABCV34_RS07160: ABCV34_RS07160 - plastocyanin/azurin family copper-binding protein, at 1,539,405 to 1,539,929
_RS07160
ABCV34_RS07165: ABCV34_RS07165 - hypothetical protein, at 1,539,931 to 1,540,359
_RS07165
Position (kb) 1538
1539
1540 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 1537.601 kb on + strand, within ABCV34_RS07145 at 1537.601 kb on + strand, within ABCV34_RS07145 at 1537.601 kb on + strand, within ABCV34_RS07145 at 1537.601 kb on + strand, within ABCV34_RS07145 at 1537.601 kb on + strand, within ABCV34_RS07145 at 1537.602 kb on - strand, within ABCV34_RS07145 at 1537.602 kb on - strand, within ABCV34_RS07145 at 1537.746 kb on - strand, within ABCV34_RS07145 at 1538.073 kb on + strand at 1538.073 kb on + strand at 1538.073 kb on + strand at 1538.073 kb on + strand at 1538.073 kb on + strand at 1538.073 kb on + strand at 1538.073 kb on + strand at 1538.074 kb on - strand at 1538.074 kb on - strand at 1538.074 kb on - strand at 1538.074 kb on - strand at 1538.074 kb on - strand at 1538.114 kb on + strand at 1538.114 kb on + strand at 1538.114 kb on + strand at 1538.114 kb on + strand at 1538.114 kb on + strand at 1538.115 kb on - strand at 1538.115 kb on - strand at 1538.115 kb on - strand at 1538.115 kb on - strand at 1538.115 kb on - strand at 1538.115 kb on - strand at 1538.115 kb on - strand at 1538.127 kb on + strand at 1538.127 kb on + strand at 1538.127 kb on + strand at 1538.127 kb on + strand at 1538.127 kb on + strand at 1538.127 kb on + strand at 1538.127 kb on + strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.128 kb on - strand at 1538.398 kb on - strand, within ABCV34_RS07150 at 1538.398 kb on - strand, within ABCV34_RS07150 at 1538.457 kb on + strand at 1538.457 kb on + strand at 1538.457 kb on + strand at 1538.457 kb on + strand at 1538.457 kb on + strand at 1538.458 kb on - strand at 1538.588 kb on + strand at 1538.588 kb on + strand at 1538.588 kb on + strand at 1538.588 kb on + strand at 1538.589 kb on - strand at 1538.589 kb on - strand at 1538.656 kb on + strand at 1538.656 kb on + strand at 1538.920 kb on + strand, within ABCV34_RS07155 at 1538.920 kb on + strand, within ABCV34_RS07155 at 1538.920 kb on + strand, within ABCV34_RS07155 at 1538.920 kb on + strand, within ABCV34_RS07155 at 1538.921 kb on - strand, within ABCV34_RS07155 at 1538.921 kb on - strand, within ABCV34_RS07155 at 1538.921 kb on - strand, within ABCV34_RS07155 at 1538.921 kb on - strand, within ABCV34_RS07155 at 1539.064 kb on + strand, within ABCV34_RS07155 at 1539.065 kb on - strand, within ABCV34_RS07155 at 1539.065 kb on - strand, within ABCV34_RS07155 at 1539.494 kb on - strand, within ABCV34_RS07160 at 1539.571 kb on + strand, within ABCV34_RS07160 at 1539.571 kb on + strand, within ABCV34_RS07160 at 1539.571 kb on + strand, within ABCV34_RS07160 at 1539.571 kb on + strand, within ABCV34_RS07160 at 1539.571 kb on + strand, within ABCV34_RS07160 at 1539.571 kb on + strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.572 kb on - strand, within ABCV34_RS07160 at 1539.577 kb on + strand, within ABCV34_RS07160 at 1539.577 kb on + strand, within ABCV34_RS07160 at 1539.577 kb on + strand, within ABCV34_RS07160 at 1539.578 kb on - strand, within ABCV34_RS07160 at 1539.578 kb on - strand, within ABCV34_RS07160 at 1539.578 kb on - strand, within ABCV34_RS07160 at 1539.578 kb on - strand, within ABCV34_RS07160 at 1539.578 kb on - strand, within ABCV34_RS07160 at 1539.628 kb on + strand, within ABCV34_RS07160 at 1539.692 kb on - strand, within ABCV34_RS07160 at 1539.929 kb on + strand at 1539.929 kb on + strand at 1539.929 kb on + strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.930 kb on - strand at 1539.964 kb on + strand at 1539.964 kb on + strand at 1539.964 kb on + strand at 1539.964 kb on + strand at 1539.964 kb on + strand at 1539.965 kb on - strand at 1539.965 kb on - strand at 1539.965 kb on - strand at 1539.965 kb on - strand at 1540.022 kb on + strand, within ABCV34_RS07165 at 1540.022 kb on + strand, within ABCV34_RS07165 at 1540.022 kb on + strand, within ABCV34_RS07165 at 1540.022 kb on + strand, within ABCV34_RS07165 at 1540.022 kb on + strand, within ABCV34_RS07165 at 1540.022 kb on + strand, within ABCV34_RS07165 at 1540.023 kb on - strand, within ABCV34_RS07165 at 1540.023 kb on - strand, within ABCV34_RS07165 at 1540.023 kb on - strand, within ABCV34_RS07165 at 1540.023 kb on - strand, within ABCV34_RS07165 at 1540.023 kb on - strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.112 kb on + strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.113 kb on - strand, within ABCV34_RS07165 at 1540.247 kb on + strand, within ABCV34_RS07165 at 1540.247 kb on + strand, within ABCV34_RS07165 at 1540.248 kb on - strand, within ABCV34_RS07165 at 1540.248 kb on - strand, within ABCV34_RS07165
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 1,537,601 + ABCV34_RS07145 0.26 -0.9 1,537,601 + ABCV34_RS07145 0.26 -0.3 1,537,601 + ABCV34_RS07145 0.26 -0.4 1,537,601 + ABCV34_RS07145 0.26 -3.2 1,537,601 + ABCV34_RS07145 0.26 +0.8 1,537,602 - ABCV34_RS07145 0.26 +2.4 1,537,602 - ABCV34_RS07145 0.26 -0.5 1,537,746 - ABCV34_RS07145 0.52 -0.7 1,538,073 + -0.8 1,538,073 + -0.2 1,538,073 + -2.6 1,538,073 + -0.8 1,538,073 + +1.1 1,538,073 + +0.0 1,538,073 + +0.0 1,538,074 - +0.5 1,538,074 - -3.1 1,538,074 - -1.9 1,538,074 - -1.1 1,538,074 - +0.7 1,538,114 + -3.6 1,538,114 + +0.7 1,538,114 + -1.1 1,538,114 + -3.2 1,538,114 + +0.2 1,538,115 - +1.1 1,538,115 - +0.8 1,538,115 - -0.9 1,538,115 - -0.1 1,538,115 - +0.3 1,538,115 - -0.5 1,538,115 - +0.5 1,538,127 + -3.1 1,538,127 + -3.2 1,538,127 + -1.3 1,538,127 + +0.8 1,538,127 + -0.4 1,538,127 + -1.2 1,538,127 + +1.1 1,538,128 - +0.0 1,538,128 - -1.1 1,538,128 - -2.3 1,538,128 - -1.6 1,538,128 - -3.7 1,538,128 - -0.1 1,538,128 - +0.5 1,538,128 - -2.2 1,538,128 - -3.2 1,538,128 - +0.0 1,538,128 - -0.9 1,538,128 - -0.8 1,538,128 - -2.5 1,538,128 - +1.1 1,538,398 - ABCV34_RS07150 0.82 -1.9 1,538,398 - ABCV34_RS07150 0.82 -0.9 1,538,457 + -2.2 1,538,457 + -0.6 1,538,457 + -3.3 1,538,457 + -1.6 1,538,457 + -0.7 1,538,458 - -0.8 1,538,588 + -1.3 1,538,588 + -0.6 1,538,588 + -2.7 1,538,588 + -0.2 1,538,589 - -1.6 1,538,589 - +0.7 1,538,656 + -4.2 1,538,656 + -1.8 1,538,920 + ABCV34_RS07155 0.44 -3.2 1,538,920 + ABCV34_RS07155 0.44 +0.3 1,538,920 + ABCV34_RS07155 0.44 +0.9 1,538,920 + ABCV34_RS07155 0.44 +0.1 1,538,921 - ABCV34_RS07155 0.44 -0.9 1,538,921 - ABCV34_RS07155 0.44 -0.2 1,538,921 - ABCV34_RS07155 0.44 +0.6 1,538,921 - ABCV34_RS07155 0.44 -3.8 1,539,064 + ABCV34_RS07155 0.64 -1.9 1,539,065 - ABCV34_RS07155 0.64 -0.1 1,539,065 - ABCV34_RS07155 0.64 -2.6 1,539,494 - ABCV34_RS07160 0.17 -1.7 1,539,571 + ABCV34_RS07160 0.32 -1.7 1,539,571 + ABCV34_RS07160 0.32 -1.8 1,539,571 + ABCV34_RS07160 0.32 +0.0 1,539,571 + ABCV34_RS07160 0.32 -2.5 1,539,571 + ABCV34_RS07160 0.32 -1.6 1,539,571 + ABCV34_RS07160 0.32 -0.6 1,539,572 - ABCV34_RS07160 0.32 -0.8 1,539,572 - ABCV34_RS07160 0.32 -0.9 1,539,572 - ABCV34_RS07160 0.32 -1.1 1,539,572 - ABCV34_RS07160 0.32 +0.7 1,539,572 - ABCV34_RS07160 0.32 -0.7 1,539,572 - ABCV34_RS07160 0.32 -0.4 1,539,572 - ABCV34_RS07160 0.32 +0.1 1,539,572 - ABCV34_RS07160 0.32 +0.8 1,539,572 - ABCV34_RS07160 0.32 -1.2 1,539,577 + ABCV34_RS07160 0.33 -1.2 1,539,577 + ABCV34_RS07160 0.33 -0.2 1,539,577 + ABCV34_RS07160 0.33 -3.6 1,539,578 - ABCV34_RS07160 0.33 -0.6 1,539,578 - ABCV34_RS07160 0.33 -0.6 1,539,578 - ABCV34_RS07160 0.33 +0.0 1,539,578 - ABCV34_RS07160 0.33 -3.0 1,539,578 - ABCV34_RS07160 0.33 -1.7 1,539,628 + ABCV34_RS07160 0.42 -1.2 1,539,692 - ABCV34_RS07160 0.55 +1.8 1,539,929 + -1.0 1,539,929 + -0.5 1,539,929 + -3.3 1,539,930 - -1.2 1,539,930 - -1.5 1,539,930 - +2.0 1,539,930 - -0.5 1,539,930 - -1.5 1,539,930 - -3.3 1,539,930 - -1.5 1,539,930 - -0.7 1,539,930 - -0.8 1,539,930 - +0.5 1,539,964 + +2.0 1,539,964 + +0.4 1,539,964 + +0.5 1,539,964 + -1.6 1,539,964 + -3.1 1,539,965 - +0.5 1,539,965 - -1.5 1,539,965 - -0.5 1,539,965 - -1.8 1,540,022 + ABCV34_RS07165 0.21 -1.5 1,540,022 + ABCV34_RS07165 0.21 -0.1 1,540,022 + ABCV34_RS07165 0.21 +0.3 1,540,022 + ABCV34_RS07165 0.21 -2.1 1,540,022 + ABCV34_RS07165 0.21 -0.4 1,540,022 + ABCV34_RS07165 0.21 -1.3 1,540,023 - ABCV34_RS07165 0.21 -0.1 1,540,023 - ABCV34_RS07165 0.21 -1.8 1,540,023 - ABCV34_RS07165 0.21 -2.1 1,540,023 - ABCV34_RS07165 0.21 -1.0 1,540,023 - ABCV34_RS07165 0.21 +0.1 1,540,112 + ABCV34_RS07165 0.42 -1.3 1,540,112 + ABCV34_RS07165 0.42 +0.0 1,540,112 + ABCV34_RS07165 0.42 -2.0 1,540,112 + ABCV34_RS07165 0.42 -1.5 1,540,112 + ABCV34_RS07165 0.42 -3.2 1,540,112 + ABCV34_RS07165 0.42 +0.7 1,540,112 + ABCV34_RS07165 0.42 -1.6 1,540,112 + ABCV34_RS07165 0.42 +0.5 1,540,112 + ABCV34_RS07165 0.42 -1.0 1,540,112 + ABCV34_RS07165 0.42 -0.4 1,540,112 + ABCV34_RS07165 0.42 -1.4 1,540,112 + ABCV34_RS07165 0.42 +1.0 1,540,112 + ABCV34_RS07165 0.42 -2.6 1,540,112 + ABCV34_RS07165 0.42 -1.2 1,540,112 + ABCV34_RS07165 0.42 -1.4 1,540,112 + ABCV34_RS07165 0.42 -1.2 1,540,113 - ABCV34_RS07165 0.42 -2.6 1,540,113 - ABCV34_RS07165 0.42 -1.5 1,540,113 - ABCV34_RS07165 0.42 -2.2 1,540,113 - ABCV34_RS07165 0.42 -0.0 1,540,113 - ABCV34_RS07165 0.42 -0.0 1,540,113 - ABCV34_RS07165 0.42 +1.5 1,540,113 - ABCV34_RS07165 0.42 -1.3 1,540,113 - ABCV34_RS07165 0.42 -1.3 1,540,113 - ABCV34_RS07165 0.42 -3.0 1,540,247 + ABCV34_RS07165 0.74 -2.5 1,540,247 + ABCV34_RS07165 0.74 -2.8 1,540,248 - ABCV34_RS07165 0.74 +0.4 1,540,248 - ABCV34_RS07165 0.74 +0.4
Or see this region's nucleotide sequence