Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS07025

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
1,510,469	+				-0.7
1,510,470	-				-0.3
1,510,802	+				-1.3
1,510,823	+				-3.0
1,510,824	-				-3.2
1,510,948	+				-0.6
1,510,948	+				-2.8
1,510,948	+				-3.1
1,510,948	+				-1.8
1,510,949	-				-1.1
1,510,949	-				-2.3
1,510,992	+				-2.8
1,510,993	-				-1.0
1,510,993	-				+2.0
1,511,010	+				-1.3
1,511,010	+				-2.6
1,511,011	-				-0.3
1,511,011	-				-1.3
1,511,011	-				-0.3
1,511,112	+		ABCV34_RS07025	0.24	-0.9
1,511,112	+		ABCV34_RS07025	0.24	+1.0
1,511,112	+		ABCV34_RS07025	0.24	+2.7
1,511,112	+		ABCV34_RS07025	0.24	-3.1
1,511,112	+		ABCV34_RS07025	0.24	-0.4
1,511,112	+		ABCV34_RS07025	0.24	-0.6
1,511,113	-		ABCV34_RS07025	0.24	+2.4
1,511,113	-		ABCV34_RS07025	0.24	-1.6
1,511,113	-		ABCV34_RS07025	0.24	-0.3
1,511,113	-		ABCV34_RS07025	0.24	-0.8
1,511,113	-		ABCV34_RS07025	0.24	-0.2
1,511,113	-		ABCV34_RS07025	0.24	+1.3
1,511,113	-		ABCV34_RS07025	0.24	-1.0
1,511,185	-		ABCV34_RS07025	0.35	-1.8
1,511,277	+		ABCV34_RS07025	0.49	-1.5
1,511,277	+		ABCV34_RS07025	0.49	-1.6
1,511,277	+		ABCV34_RS07025	0.49	-2.4
1,511,277	+		ABCV34_RS07025	0.49	-1.0
1,511,277	+		ABCV34_RS07025	0.49	+0.4
1,511,277	+		ABCV34_RS07025	0.49	-0.3
1,511,278	-		ABCV34_RS07025	0.49	-2.5
1,511,278	-		ABCV34_RS07025	0.49	-2.1
1,511,368	+		ABCV34_RS07025	0.63	+2.8
1,511,446	+		ABCV34_RS07025	0.76	-0.3
1,511,447	-		ABCV34_RS07025	0.76	-1.8
1,511,447	-		ABCV34_RS07025	0.76	-4.3
1,511,449	-		ABCV34_RS07025	0.76	-1.5
1,511,449	-		ABCV34_RS07025	0.76	+1.1
1,511,449	-		ABCV34_RS07025	0.76	-2.8
1,511,512	+		ABCV34_RS07025	0.86	+0.0
1,511,513	-		ABCV34_RS07025	0.86	-0.8
1,511,513	-		ABCV34_RS07025	0.86	+0.4
1,511,513	-		ABCV34_RS07025	0.86	+0.4
1,511,513	-		ABCV34_RS07025	0.86	-0.3
1,511,513	-		ABCV34_RS07025	0.86	-2.2
1,511,513	-		ABCV34_RS07025	0.86	-1.0
1,511,513	-		ABCV34_RS07025	0.86	-0.3
1,511,513	-		ABCV34_RS07025	0.86	+0.7
1,511,513	-		ABCV34_RS07025	0.86	-2.7
1,511,513	-		ABCV34_RS07025	0.86	-0.3
1,511,591	+				+1.9
1,511,592	-				-0.5
1,511,592	-				+2.0
1,511,592	-				-1.1
1,511,660	+				+1.6
1,511,661	-				-0.3
1,511,661	-				-0.6
1,511,661	-				-3.4
1,511,684	+				-1.1
1,511,684	+				-1.7
1,511,686	+				-2.2
1,511,702	+				-0.3
1,511,702	+				+0.4
1,511,702	+				-0.7
1,511,702	+				-2.0
1,511,704	+				-0.3
1,511,704	+				+1.1
1,511,713	+				+0.2
1,511,714	-				-1.2
1,511,714	-				-1.1
1,511,714	-				-0.0
1,511,715	+				-0.9
1,511,715	+				+0.2
1,511,715	+				-2.5
1,511,715	+				+0.0
1,511,715	+				-1.8
1,511,715	+				+1.9
1,511,715	+				+0.1
1,511,715	+				-2.2
1,511,716	-				-0.2
1,511,716	-				-2.2
1,511,716	-				+1.0
1,511,716	-				-1.6
1,511,716	-				-0.5
1,511,716	-				-0.1
1,511,719	+				-0.3
1,511,719	+				-2.4
1,511,719	+				-0.3
1,511,719	+				+0.1
1,511,719	+				-3.0
1,511,720	-				-1.8
1,511,720	-				-2.0
1,511,720	-				+1.5
1,511,720	-				+0.5
1,511,720	-				-2.9
1,511,720	-				-0.1
1,511,721	+				-0.8
1,511,721	+				-1.3
1,511,721	+				-0.3
1,511,722	-				-1.0
1,511,740	+				-2.4
1,511,740	+				-0.1
1,511,740	+				-1.1
1,511,740	+				-2.1
1,511,740	+				-2.2
1,511,740	+				-1.4
1,511,741	-				-1.0
1,511,741	-				-2.0
1,511,741	-				-1.1
1,511,812	+				-3.3
1,511,812	+				-2.1
1,511,812	+				-0.7
1,511,813	-				-0.2
1,511,813	-				-1.3
1,512,016	+		ABCV34_RS07030	0.16	+1.2
1,512,016	+		ABCV34_RS07030	0.16	+0.9
1,512,016	+		ABCV34_RS07030	0.16	-0.6
1,512,017	-		ABCV34_RS07030	0.16	-1.5
1,512,017	-		ABCV34_RS07030	0.16	-0.2
1,512,205	+		ABCV34_RS07030	0.27	-0.7
1,512,205	+		ABCV34_RS07030	0.27	-0.9
1,512,205	+		ABCV34_RS07030	0.27	-2.5
1,512,205	+		ABCV34_RS07030	0.27	-0.4
1,512,205	+		ABCV34_RS07030	0.27	+0.0
1,512,205	+		ABCV34_RS07030	0.27	-1.8
1,512,205	+		ABCV34_RS07030	0.27	-2.2
1,512,205	+		ABCV34_RS07030	0.27	-1.9
1,512,205	+		ABCV34_RS07030	0.27	+0.4
1,512,205	+		ABCV34_RS07030	0.27	-1.1
1,512,205	+		ABCV34_RS07030	0.27	-1.5
1,512,206	-		ABCV34_RS07030	0.27	-0.6
1,512,206	-		ABCV34_RS07030	0.27	-2.0
1,512,206	-		ABCV34_RS07030	0.27	-1.6
1,512,206	-		ABCV34_RS07030	0.27	-1.1
1,512,206	-		ABCV34_RS07030	0.27	-1.5
1,512,206	-		ABCV34_RS07030	0.27	+0.4
1,512,206	-		ABCV34_RS07030	0.27	-0.2
1,512,206	-		ABCV34_RS07030	0.27	-2.5
1,512,236	-		ABCV34_RS07030	0.28	-0.7
1,512,349	+		ABCV34_RS07030	0.35	-2.4
1,512,350	-		ABCV34_RS07030	0.35	-2.0
1,512,350	-		ABCV34_RS07030	0.35	+0.6
1,512,350	-		ABCV34_RS07030	0.35	-1.8
1,512,350	-		ABCV34_RS07030	0.35	-0.4
1,512,355	+		ABCV34_RS07030	0.35	-0.8
1,512,356	-		ABCV34_RS07030	0.35	+0.4
1,512,430	+		ABCV34_RS07030	0.39	-0.5
1,512,430	+		ABCV34_RS07030	0.39	+0.2
1,512,430	+		ABCV34_RS07030	0.39	-0.6
1,512,430	+		ABCV34_RS07030	0.39	-0.6
1,512,430	+		ABCV34_RS07030	0.39	+0.3
1,512,430	+		ABCV34_RS07030	0.39	-1.1
1,512,430	+		ABCV34_RS07030	0.39	+0.7
1,512,430	+		ABCV34_RS07030	0.39	-1.1
1,512,431	-		ABCV34_RS07030	0.39	+0.1
1,512,431	-		ABCV34_RS07030	0.39	-2.7
1,512,431	-		ABCV34_RS07030	0.39	+0.7
1,512,431	-		ABCV34_RS07030	0.39	-2.5
1,512,431	-		ABCV34_RS07030	0.39	-2.1
1,512,431	-		ABCV34_RS07030	0.39	-0.2
1,512,431	-		ABCV34_RS07030	0.39	-2.8
1,512,479	+		ABCV34_RS07030	0.42	-0.8
1,512,480	-		ABCV34_RS07030	0.42	-0.8
1,512,563	-		ABCV34_RS07030	0.46	+0.5