Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06210

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
1,350,619	-		ABCV34_RS06205	0.71	-0.7
1,350,661	+		ABCV34_RS06205	0.73	-1.5
1,350,661	+		ABCV34_RS06205	0.73	-0.6
1,350,661	+		ABCV34_RS06205	0.73	-0.7
1,350,661	+		ABCV34_RS06205	0.73	-2.1
1,350,661	+		ABCV34_RS06205	0.73	-1.4
1,350,662	-		ABCV34_RS06205	0.73	-3.7
1,350,662	-		ABCV34_RS06205	0.73	+0.4
1,350,662	-		ABCV34_RS06205	0.73	-0.5
1,350,662	-		ABCV34_RS06205	0.73	+0.6
1,350,662	-		ABCV34_RS06205	0.73	-2.8
1,350,879	+		ABCV34_RS06205	0.81	+0.9
1,350,879	+		ABCV34_RS06205	0.81	-1.9
1,350,880	-		ABCV34_RS06205	0.81	-0.8
1,350,880	-		ABCV34_RS06205	0.81	-1.8
1,350,880	-		ABCV34_RS06205	0.81	+0.5
1,351,039	-		ABCV34_RS06205	0.87	-1.7
1,351,039	-		ABCV34_RS06205	0.87	-1.2
1,351,039	-		ABCV34_RS06205	0.87	-1.7
1,351,056	+		ABCV34_RS06205	0.88	-0.5
1,351,056	+		ABCV34_RS06205	0.88	-1.0
1,351,056	+		ABCV34_RS06205	0.88	-0.7
1,351,056	+		ABCV34_RS06205	0.88	-1.1
1,351,056	+		ABCV34_RS06205	0.88	+1.1
1,351,056	+		ABCV34_RS06205	0.88	-0.7
1,351,056	+		ABCV34_RS06205	0.88	-0.7
1,351,056	+		ABCV34_RS06205	0.88	-1.1
1,351,056	+		ABCV34_RS06205	0.88	-0.4
1,351,056	+		ABCV34_RS06205	0.88	-0.5
1,351,057	-		ABCV34_RS06205	0.88	-0.9
1,351,057	-		ABCV34_RS06205	0.88	+1.1
1,351,057	-		ABCV34_RS06205	0.88	-1.3
1,351,057	-		ABCV34_RS06205	0.88	+0.6
1,351,057	-		ABCV34_RS06205	0.88	-1.5
1,351,057	-		ABCV34_RS06205	0.88	-1.2
1,351,057	-		ABCV34_RS06205	0.88	-1.7
1,351,057	-		ABCV34_RS06205	0.88	-0.9
1,351,057	-		ABCV34_RS06205	0.88	-3.5
1,351,057	-		ABCV34_RS06205	0.88	-2.1
1,351,109	+		ABCV34_RS06205	0.90	-1.5
1,351,287	+				-0.5
1,351,287	+				-0.0
1,351,287	+				-3.4
1,351,287	+				-0.3
1,351,288	-				-1.0
1,351,288	-				-2.4
1,351,288	-				+0.5
1,351,288	-				-1.4
1,351,416	+				-1.1
1,351,416	+				-0.6
1,351,416	+				-1.8
1,351,416	+				-1.0
1,351,416	+				-2.4
1,351,416	+				+0.4
1,351,417	-				+0.1
1,351,417	-				-1.2
1,351,417	-				-4.1
1,351,417	-				-0.4
1,351,417	-				-1.3
1,351,417	-				-1.9
1,351,417	-				+0.9
1,351,417	-				-0.4
1,351,417	-				-2.2
1,351,417	-				+0.7
1,351,417	-				-0.6
1,351,417	-				+0.9
1,351,418	+				-3.4
1,351,418	+				+2.5
1,351,419	-				-0.7
1,351,419	-				-0.2
1,351,419	-				-0.8
1,351,419	-				-1.7
1,351,419	-				-1.8
1,351,419	-				-2.8
1,351,419	-				-2.0
1,351,482	+				+0.0
1,351,482	+				-1.1
1,351,483	-				-0.5
1,351,483	-				-2.1
1,351,483	-				-2.1
1,351,483	-				+1.2
1,351,493	+				+0.5
1,351,494	-				-2.6
1,351,543	+				-1.5
1,351,543	+				-2.7
1,351,543	+				+0.2
1,351,544	-				-1.4
1,351,544	-				-2.3
1,351,544	-				-1.3
1,351,700	+				-0.9
1,351,700	+				-2.7
1,351,700	+				-2.6
1,351,700	+				+0.3
1,351,701	-				-0.9
1,351,701	-				-1.2
1,351,701	-				-0.4
1,351,741	+		ABCV34_RS06210	0.13	-0.5
1,351,741	+		ABCV34_RS06210	0.13	-2.0
1,351,741	+		ABCV34_RS06210	0.13	-1.7
1,351,741	+		ABCV34_RS06210	0.13	+0.7
1,351,741	+		ABCV34_RS06210	0.13	-1.3
1,351,741	+		ABCV34_RS06210	0.13	-0.1
1,351,741	+		ABCV34_RS06210	0.13	-1.9
1,351,742	-		ABCV34_RS06210	0.13	-2.2
1,351,742	-		ABCV34_RS06210	0.13	-2.0
1,351,742	-		ABCV34_RS06210	0.13	+0.1
1,351,742	-		ABCV34_RS06210	0.13	-1.3
1,351,784	+		ABCV34_RS06210	0.16	-0.8
1,351,784	+		ABCV34_RS06210	0.16	-2.6
1,351,804	+		ABCV34_RS06210	0.18	+0.3
1,351,804	+		ABCV34_RS06210	0.18	-0.1
1,351,804	+		ABCV34_RS06210	0.18	-1.5
1,351,850	+		ABCV34_RS06210	0.22	-0.1
1,351,851	-		ABCV34_RS06210	0.22	-1.2
1,352,303	+		ABCV34_RS06210	0.61	-0.3
1,352,303	+		ABCV34_RS06210	0.61	+0.8
1,352,303	+		ABCV34_RS06210	0.61	-1.8
1,352,303	+		ABCV34_RS06210	0.61	+2.1
1,352,303	+		ABCV34_RS06210	0.61	-0.8
1,352,304	-		ABCV34_RS06210	0.61	-0.2
1,352,304	-		ABCV34_RS06210	0.61	+0.5
1,352,304	-		ABCV34_RS06210	0.61	-2.3
1,352,304	-		ABCV34_RS06210	0.61	-1.0
1,352,304	-		ABCV34_RS06210	0.61	-0.9
1,352,304	-		ABCV34_RS06210	0.61	-0.1
1,352,568	-		ABCV34_RS06210	0.84	-0.3
1,352,568	-		ABCV34_RS06210	0.84	+2.0
1,352,568	-		ABCV34_RS06210	0.84	-1.4
1,352,699	+				-0.5
1,352,700	-				-1.5
1,352,793	+				-1.2
1,352,793	+				-2.5
1,352,793	+				-0.7
1,352,794	-				-1.4
1,352,794	-				-1.8
1,352,794	-				-1.5
1,352,794	-				-1.0
1,352,794	-				+1.7
1,352,806	+				-0.0
1,352,821	+				-0.2
1,352,821	+				-1.6
1,352,822	-				-0.1
1,352,822	-				-3.9
1,352,839	+				+0.2
1,352,839	+				-1.3
1,352,839	+				-1.1
1,352,839	+				+1.0
1,352,839	+				-0.6
1,352,839	+				-1.6
1,352,840	-				-1.0
1,352,840	-				+0.3
1,352,840	-				+0.2
1,352,840	-				-0.5
1,352,840	-				-2.8
1,352,840	-				-2.7
1,352,840	-				-1.3
1,352,840	-				-0.5
1,352,911	+				-0.7
1,352,911	+				-0.6
1,352,911	+				-3.1
1,352,911	+				-3.0
1,352,912	-				-3.4
1,353,264	+		ABCV34_RS06215	0.44	-2.2
1,353,264	+		ABCV34_RS06215	0.44	+0.2
1,353,264	+		ABCV34_RS06215	0.44	+0.3
1,353,264	+		ABCV34_RS06215	0.44	-0.3
1,353,265	-		ABCV34_RS06215	0.44	+3.3
1,353,412	+		ABCV34_RS06215	0.61	-1.7
1,353,413	-		ABCV34_RS06215	0.62	-0.8
1,353,413	-		ABCV34_RS06215	0.62	-0.1
1,353,474	+		ABCV34_RS06215	0.69	-1.0
1,353,474	+		ABCV34_RS06215	0.69	+0.3
1,353,474	+		ABCV34_RS06215	0.69	-0.5
1,353,474	+		ABCV34_RS06215	0.69	-0.4
1,353,475	-		ABCV34_RS06215	0.69	-0.9
1,353,475	-		ABCV34_RS06215	0.69	+0.8
1,353,475	-		ABCV34_RS06215	0.69	-0.5
1,353,725	+				-2.0
1,353,725	+				-0.7
1,353,725	+				-1.7
1,353,725	+				-2.3
1,353,726	-				-0.9
1,353,726	-				-2.3
1,353,726	-				-0.9