Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04550 and ABCV34_RS04555 are separated by 171 nucleotides ABCV34_RS04555 and ABCV34_RS04560 are separated by 192 nucleotides
ABCV34_RS04550: ABCV34_RS04550 - flagellin, at 985,657 to 987,603
_RS04550
ABCV34_RS04555: ABCV34_RS04555 - FliC/FljB family flagellin, at 987,775 to 988,959
_RS04555
ABCV34_RS04560: ABCV34_RS04560 - hypothetical protein, at 989,152 to 992,604
_RS04560
Position (kb) 987
988
989 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 986.800 kb on - strand, within ABCV34_RS04550 at 986.860 kb on + strand, within ABCV34_RS04550 at 986.862 kb on - strand, within ABCV34_RS04550 at 986.862 kb on - strand, within ABCV34_RS04550 at 986.862 kb on - strand, within ABCV34_RS04550 at 986.874 kb on + strand, within ABCV34_RS04550 at 986.874 kb on + strand, within ABCV34_RS04550 at 986.875 kb on - strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.978 kb on + strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 986.979 kb on - strand, within ABCV34_RS04550 at 987.108 kb on + strand, within ABCV34_RS04550 at 987.108 kb on + strand, within ABCV34_RS04550 at 987.108 kb on + strand, within ABCV34_RS04550 at 987.109 kb on - strand, within ABCV34_RS04550 at 987.109 kb on - strand, within ABCV34_RS04550 at 987.109 kb on - strand, within ABCV34_RS04550 at 987.109 kb on - strand, within ABCV34_RS04550 at 987.160 kb on + strand, within ABCV34_RS04550 at 987.160 kb on + strand, within ABCV34_RS04550 at 987.161 kb on - strand, within ABCV34_RS04550 at 987.296 kb on + strand, within ABCV34_RS04550 at 987.297 kb on - strand, within ABCV34_RS04550 at 987.607 kb on + strand at 987.608 kb on - strand at 987.618 kb on - strand at 987.618 kb on - strand at 987.627 kb on + strand at 987.628 kb on - strand at 987.650 kb on + strand at 987.673 kb on + strand at 987.673 kb on + strand at 987.673 kb on + strand at 987.673 kb on + strand at 987.732 kb on + strand at 987.733 kb on - strand at 987.733 kb on - strand at 987.733 kb on - strand at 987.734 kb on + strand at 987.735 kb on - strand at 987.735 kb on - strand at 987.735 kb on - strand at 987.735 kb on - strand at 987.735 kb on - strand at 987.735 kb on - strand at 987.735 kb on - strand at 987.937 kb on - strand, within ABCV34_RS04555 at 987.937 kb on - strand, within ABCV34_RS04555 at 987.937 kb on - strand, within ABCV34_RS04555 at 987.977 kb on - strand, within ABCV34_RS04555 at 988.012 kb on - strand, within ABCV34_RS04555 at 988.042 kb on - strand, within ABCV34_RS04555 at 988.042 kb on - strand, within ABCV34_RS04555 at 988.042 kb on - strand, within ABCV34_RS04555 at 988.042 kb on - strand, within ABCV34_RS04555 at 988.042 kb on - strand, within ABCV34_RS04555 at 988.042 kb on - strand, within ABCV34_RS04555 at 988.042 kb on - strand, within ABCV34_RS04555 at 988.151 kb on + strand, within ABCV34_RS04555 at 988.151 kb on + strand, within ABCV34_RS04555 at 988.152 kb on - strand, within ABCV34_RS04555 at 988.152 kb on - strand, within ABCV34_RS04555 at 988.234 kb on - strand, within ABCV34_RS04555 at 988.234 kb on - strand, within ABCV34_RS04555 at 988.375 kb on - strand, within ABCV34_RS04555 at 988.383 kb on - strand, within ABCV34_RS04555 at 988.705 kb on - strand, within ABCV34_RS04555 at 988.849 kb on - strand at 988.937 kb on + strand at 988.937 kb on + strand at 988.937 kb on + strand at 988.937 kb on + strand at 988.938 kb on - strand at 988.938 kb on - strand at 988.938 kb on - strand at 988.938 kb on - strand at 988.938 kb on - strand at 988.938 kb on - strand at 988.938 kb on - strand at 988.938 kb on - strand at 988.951 kb on - strand at 988.970 kb on + strand at 988.970 kb on + strand at 988.970 kb on + strand at 988.970 kb on + strand at 988.970 kb on + strand at 988.971 kb on - strand at 988.971 kb on - strand at 988.971 kb on - strand at 988.971 kb on - strand at 988.971 kb on - strand at 989.074 kb on - strand at 989.095 kb on + strand at 989.095 kb on + strand at 989.096 kb on - strand at 989.096 kb on - strand at 989.189 kb on + strand at 989.189 kb on + strand at 989.189 kb on + strand at 989.280 kb on + strand at 989.291 kb on - strand at 989.320 kb on + strand at 989.320 kb on + strand at 989.320 kb on + strand at 989.321 kb on - strand at 989.321 kb on - strand at 989.321 kb on - strand at 989.321 kb on - strand at 989.321 kb on - strand at 989.321 kb on - strand at 989.325 kb on - strand at 989.325 kb on - strand at 989.325 kb on - strand at 989.421 kb on + strand at 989.437 kb on - strand at 989.438 kb on + strand at 989.438 kb on + strand at 989.438 kb on + strand at 989.438 kb on + strand at 989.439 kb on - strand at 989.439 kb on - strand at 989.439 kb on - strand at 989.439 kb on - strand at 989.540 kb on + strand, within ABCV34_RS04560 at 989.540 kb on + strand, within ABCV34_RS04560 at 989.570 kb on - strand, within ABCV34_RS04560 at 989.570 kb on - strand, within ABCV34_RS04560 at 989.585 kb on - strand, within ABCV34_RS04560 at 989.585 kb on - strand, within ABCV34_RS04560 at 989.585 kb on - strand, within ABCV34_RS04560 at 989.686 kb on - strand, within ABCV34_RS04560 at 989.724 kb on - strand, within ABCV34_RS04560 at 989.802 kb on - strand, within ABCV34_RS04560
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 986,800 - ABCV34_RS04550 0.59 -0.9 986,860 + ABCV34_RS04550 0.62 -2.7 986,862 - ABCV34_RS04550 0.62 -1.4 986,862 - ABCV34_RS04550 0.62 -2.9 986,862 - ABCV34_RS04550 0.62 -0.6 986,874 + ABCV34_RS04550 0.63 -1.4 986,874 + ABCV34_RS04550 0.63 -0.9 986,875 - ABCV34_RS04550 0.63 -3.1 986,978 + ABCV34_RS04550 0.68 +1.2 986,978 + ABCV34_RS04550 0.68 -2.0 986,978 + ABCV34_RS04550 0.68 -2.3 986,978 + ABCV34_RS04550 0.68 -0.1 986,978 + ABCV34_RS04550 0.68 -0.7 986,978 + ABCV34_RS04550 0.68 -2.2 986,978 + ABCV34_RS04550 0.68 +1.1 986,978 + ABCV34_RS04550 0.68 -0.3 986,978 + ABCV34_RS04550 0.68 -2.2 986,978 + ABCV34_RS04550 0.68 -1.3 986,978 + ABCV34_RS04550 0.68 +1.7 986,978 + ABCV34_RS04550 0.68 -1.5 986,978 + ABCV34_RS04550 0.68 +0.4 986,979 - ABCV34_RS04550 0.68 -3.5 986,979 - ABCV34_RS04550 0.68 -1.6 986,979 - ABCV34_RS04550 0.68 -0.5 986,979 - ABCV34_RS04550 0.68 -2.1 986,979 - ABCV34_RS04550 0.68 -1.5 986,979 - ABCV34_RS04550 0.68 +0.1 986,979 - ABCV34_RS04550 0.68 +2.1 986,979 - ABCV34_RS04550 0.68 -2.3 986,979 - ABCV34_RS04550 0.68 -1.2 986,979 - ABCV34_RS04550 0.68 +0.0 986,979 - ABCV34_RS04550 0.68 -1.1 986,979 - ABCV34_RS04550 0.68 -0.5 986,979 - ABCV34_RS04550 0.68 -0.8 986,979 - ABCV34_RS04550 0.68 -3.1 986,979 - ABCV34_RS04550 0.68 -1.3 987,108 + ABCV34_RS04550 0.75 +0.3 987,108 + ABCV34_RS04550 0.75 -0.4 987,108 + ABCV34_RS04550 0.75 -2.7 987,109 - ABCV34_RS04550 0.75 -0.5 987,109 - ABCV34_RS04550 0.75 -0.6 987,109 - ABCV34_RS04550 0.75 -1.7 987,109 - ABCV34_RS04550 0.75 -2.0 987,160 + ABCV34_RS04550 0.77 -0.1 987,160 + ABCV34_RS04550 0.77 -0.3 987,161 - ABCV34_RS04550 0.77 +1.5 987,296 + ABCV34_RS04550 0.84 -2.0 987,297 - ABCV34_RS04550 0.84 -2.7 987,607 + -1.2 987,608 - -1.6 987,618 - +0.7 987,618 - +2.4 987,627 + -0.9 987,628 - -1.5 987,650 + +1.7 987,673 + -1.2 987,673 + -1.4 987,673 + -0.6 987,673 + -1.0 987,732 + +0.9 987,733 - -0.2 987,733 - -0.1 987,733 - -1.7 987,734 + +0.2 987,735 - +1.2 987,735 - -0.6 987,735 - -3.8 987,735 - -2.2 987,735 - -1.8 987,735 - -2.3 987,735 - -0.9 987,937 - ABCV34_RS04555 0.14 -1.2 987,937 - ABCV34_RS04555 0.14 -2.3 987,937 - ABCV34_RS04555 0.14 +0.1 987,977 - ABCV34_RS04555 0.17 +0.3 988,012 - ABCV34_RS04555 0.20 +0.2 988,042 - ABCV34_RS04555 0.23 +0.1 988,042 - ABCV34_RS04555 0.23 -1.2 988,042 - ABCV34_RS04555 0.23 +0.0 988,042 - ABCV34_RS04555 0.23 +0.7 988,042 - ABCV34_RS04555 0.23 +0.0 988,042 - ABCV34_RS04555 0.23 +2.1 988,042 - ABCV34_RS04555 0.23 -0.5 988,151 + ABCV34_RS04555 0.32 -1.1 988,151 + ABCV34_RS04555 0.32 -1.4 988,152 - ABCV34_RS04555 0.32 -0.1 988,152 - ABCV34_RS04555 0.32 -1.8 988,234 - ABCV34_RS04555 0.39 +1.3 988,234 - ABCV34_RS04555 0.39 +0.3 988,375 - ABCV34_RS04555 0.51 +0.7 988,383 - ABCV34_RS04555 0.51 -1.7 988,705 - ABCV34_RS04555 0.78 +0.1 988,849 - +1.1 988,937 + -0.7 988,937 + -1.5 988,937 + +1.0 988,937 + -1.2 988,938 - +1.1 988,938 - +0.2 988,938 - +1.0 988,938 - -0.2 988,938 - +0.9 988,938 - -2.0 988,938 - +0.1 988,938 - -0.5 988,951 - -0.1 988,970 + +1.9 988,970 + +1.3 988,970 + -0.2 988,970 + +0.4 988,970 + -0.4 988,971 - -2.8 988,971 - +1.1 988,971 - -1.8 988,971 - -0.5 988,971 - +0.1 989,074 - -1.4 989,095 + -1.5 989,095 + -1.4 989,096 - +0.4 989,096 - +0.5 989,189 + -1.2 989,189 + -0.2 989,189 + -0.4 989,280 + -0.1 989,291 - -1.6 989,320 + -1.8 989,320 + -2.8 989,320 + -1.2 989,321 - -0.8 989,321 - -1.2 989,321 - -3.0 989,321 - -3.2 989,321 - -0.5 989,321 - -0.8 989,325 - -2.7 989,325 - -1.4 989,325 - -1.4 989,421 + -0.2 989,437 - -1.7 989,438 + -1.5 989,438 + -1.2 989,438 + -0.9 989,438 + +1.3 989,439 - -1.7 989,439 - -2.7 989,439 - -2.4 989,439 - -1.1 989,540 + ABCV34_RS04560 0.11 -2.9 989,540 + ABCV34_RS04560 0.11 -2.0 989,570 - ABCV34_RS04560 0.12 -0.3 989,570 - ABCV34_RS04560 0.12 +1.7 989,585 - ABCV34_RS04560 0.13 +0.1 989,585 - ABCV34_RS04560 0.13 -0.9 989,585 - ABCV34_RS04560 0.13 -1.1 989,686 - ABCV34_RS04560 0.15 -1.2 989,724 - ABCV34_RS04560 0.17 -2.9 989,802 - ABCV34_RS04560 0.19 -1.6
Or see this region's nucleotide sequence