Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS04285

Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS04280 and ABCV34_RS04285 are separated by 170 nucleotidesABCV34_RS04285 and ABCV34_RS04290 are separated by 9 nucleotides ABCV34_RS04280: ABCV34_RS04280 - 3-isopropylmalate dehydrogenase, at 934,822 to 935,898 _RS04280 ABCV34_RS04285: ABCV34_RS04285 - 3-isopropylmalate dehydratase small subunit, at 936,069 to 936,725 _RS04285 ABCV34_RS04290: ABCV34_RS04290 - 3-isopropylmalate dehydratase large subunit, at 936,735 to 938,138 _RS04290 Position (kb) 936 937Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 935.069 kb on + strand, within ABCV34_RS04280at 935.070 kb on - strand, within ABCV34_RS04280at 935.070 kb on - strand, within ABCV34_RS04280at 935.070 kb on - strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.234 kb on + strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.235 kb on - strand, within ABCV34_RS04280at 935.409 kb on - strand, within ABCV34_RS04280at 935.409 kb on - strand, within ABCV34_RS04280at 935.423 kb on + strand, within ABCV34_RS04280at 935.423 kb on + strand, within ABCV34_RS04280at 935.489 kb on + strand, within ABCV34_RS04280at 935.489 kb on + strand, within ABCV34_RS04280at 935.489 kb on + strand, within ABCV34_RS04280at 935.489 kb on + strand, within ABCV34_RS04280at 935.489 kb on + strand, within ABCV34_RS04280at 935.489 kb on + strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.490 kb on - strand, within ABCV34_RS04280at 935.493 kb on + strand, within ABCV34_RS04280at 935.494 kb on - strand, within ABCV34_RS04280at 935.494 kb on - strand, within ABCV34_RS04280at 935.580 kb on - strand, within ABCV34_RS04280at 935.676 kb on - strand, within ABCV34_RS04280at 935.676 kb on - strand, within ABCV34_RS04280at 935.676 kb on - strand, within ABCV34_RS04280at 935.676 kb on - strand, within ABCV34_RS04280at 935.768 kb on + strand, within ABCV34_RS04280at 935.768 kb on + strand, within ABCV34_RS04280at 935.769 kb on - strand, within ABCV34_RS04280at 935.915 kb on + strandat 935.916 kb on - strandat 936.392 kb on - strand, within ABCV34_RS04285at 936.422 kb on - strand, within ABCV34_RS04285at 936.422 kb on - strand, within ABCV34_RS04285at 936.584 kb on - strand, within ABCV34_RS04285at 936.584 kb on - strand, within ABCV34_RS04285at 936.737 kb on - strandat 936.964 kb on - strand, within ABCV34_RS04290at 937.165 kb on + strand, within ABCV34_RS04290at 937.165 kb on + strand, within ABCV34_RS04290at 937.165 kb on + strand, within ABCV34_RS04290at 937.165 kb on + strand, within ABCV34_RS04290at 937.165 kb on + strand, within ABCV34_RS04290at 937.165 kb on + strand, within ABCV34_RS04290at 937.165 kb on + strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.166 kb on - strand, within ABCV34_RS04290at 937.397 kb on - strand, within ABCV34_RS04290at 937.414 kb on + strand, within ABCV34_RS04290at 937.568 kb on + strand, within ABCV34_RS04290at 937.582 kb on + strand, within ABCV34_RS04290at 937.582 kb on + strand, within ABCV34_RS04290at 937.583 kb on - strand, within ABCV34_RS04290at 937.583 kb on - strand, within ABCV34_RS04290at 937.583 kb on - strand, within ABCV34_RS04290at 937.583 kb on - strand, within ABCV34_RS04290

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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935,069 + ABCV34_RS04280 0.23 -0.2
935,070 - ABCV34_RS04280 0.23 -1.7
935,070 - ABCV34_RS04280 0.23 +2.1
935,070 - ABCV34_RS04280 0.23 -1.6
935,234 + ABCV34_RS04280 0.38 -2.1
935,234 + ABCV34_RS04280 0.38 +1.1
935,234 + ABCV34_RS04280 0.38 +1.1
935,234 + ABCV34_RS04280 0.38 +0.5
935,234 + ABCV34_RS04280 0.38 -2.8
935,234 + ABCV34_RS04280 0.38 +1.1
935,234 + ABCV34_RS04280 0.38 -1.0
935,234 + ABCV34_RS04280 0.38 +2.1
935,234 + ABCV34_RS04280 0.38 -0.9
935,234 + ABCV34_RS04280 0.38 +1.1
935,234 + ABCV34_RS04280 0.38 +0.5
935,234 + ABCV34_RS04280 0.38 -1.4
935,234 + ABCV34_RS04280 0.38 -0.7
935,234 + ABCV34_RS04280 0.38 +0.1
935,234 + ABCV34_RS04280 0.38 -0.9
935,234 + ABCV34_RS04280 0.38 +0.1
935,234 + ABCV34_RS04280 0.38 +1.1
935,234 + ABCV34_RS04280 0.38 -2.4
935,235 - ABCV34_RS04280 0.38 +0.1
935,235 - ABCV34_RS04280 0.38 +2.7
935,235 - ABCV34_RS04280 0.38 -2.6
935,235 - ABCV34_RS04280 0.38 +0.1
935,235 - ABCV34_RS04280 0.38 -1.8
935,235 - ABCV34_RS04280 0.38 +1.7
935,235 - ABCV34_RS04280 0.38 -0.5
935,235 - ABCV34_RS04280 0.38 +0.6
935,235 - ABCV34_RS04280 0.38 +0.1
935,235 - ABCV34_RS04280 0.38 +2.1
935,235 - ABCV34_RS04280 0.38 -1.1
935,235 - ABCV34_RS04280 0.38 -1.4
935,235 - ABCV34_RS04280 0.38 +2.8
935,235 - ABCV34_RS04280 0.38 +1.5
935,235 - ABCV34_RS04280 0.38 -1.2
935,235 - ABCV34_RS04280 0.38 -2.2
935,235 - ABCV34_RS04280 0.38 -2.6
935,409 - ABCV34_RS04280 0.55 +2.1
935,409 - ABCV34_RS04280 0.55 -1.5
935,423 + ABCV34_RS04280 0.56 +0.5
935,423 + ABCV34_RS04280 0.56 -0.2
935,489 + ABCV34_RS04280 0.62 +1.1
935,489 + ABCV34_RS04280 0.62 +1.1
935,489 + ABCV34_RS04280 0.62 +2.1
935,489 + ABCV34_RS04280 0.62 -1.2
935,489 + ABCV34_RS04280 0.62 +0.1
935,489 + ABCV34_RS04280 0.62 +1.7
935,490 - ABCV34_RS04280 0.62 -0.2
935,490 - ABCV34_RS04280 0.62 -2.0
935,490 - ABCV34_RS04280 0.62 +2.8
935,490 - ABCV34_RS04280 0.62 -2.5
935,490 - ABCV34_RS04280 0.62 -1.4
935,490 - ABCV34_RS04280 0.62 -2.5
935,490 - ABCV34_RS04280 0.62 +0.0
935,490 - ABCV34_RS04280 0.62 +0.1
935,490 - ABCV34_RS04280 0.62 -1.1
935,490 - ABCV34_RS04280 0.62 +1.4
935,490 - ABCV34_RS04280 0.62 -0.2
935,493 + ABCV34_RS04280 0.62 -2.6
935,494 - ABCV34_RS04280 0.62 +0.1
935,494 - ABCV34_RS04280 0.62 +0.7
935,580 - ABCV34_RS04280 0.70 +2.1
935,676 - ABCV34_RS04280 0.79 +1.2
935,676 - ABCV34_RS04280 0.79 -1.1
935,676 - ABCV34_RS04280 0.79 -2.6
935,676 - ABCV34_RS04280 0.79 +2.1
935,768 + ABCV34_RS04280 0.88 -0.7
935,768 + ABCV34_RS04280 0.88 -0.5
935,769 - ABCV34_RS04280 0.88 +1.1
935,915 + +1.1
935,916 - +1.4
936,392 - ABCV34_RS04285 0.49 -0.7
936,422 - ABCV34_RS04285 0.54 +2.1
936,422 - ABCV34_RS04285 0.54 +1.1
936,584 - ABCV34_RS04285 0.78 +0.3
936,584 - ABCV34_RS04285 0.78 -1.4
936,737 - -0.4
936,964 - ABCV34_RS04290 0.16 -2.9
937,165 + ABCV34_RS04290 0.31 -1.1
937,165 + ABCV34_RS04290 0.31 +0.1
937,165 + ABCV34_RS04290 0.31 -0.5
937,165 + ABCV34_RS04290 0.31 +0.9
937,165 + ABCV34_RS04290 0.31 -0.7
937,165 + ABCV34_RS04290 0.31 -0.9
937,165 + ABCV34_RS04290 0.31 +0.3
937,166 - ABCV34_RS04290 0.31 -0.7
937,166 - ABCV34_RS04290 0.31 +1.3
937,166 - ABCV34_RS04290 0.31 -2.3
937,166 - ABCV34_RS04290 0.31 +0.4
937,166 - ABCV34_RS04290 0.31 +0.2
937,166 - ABCV34_RS04290 0.31 -3.9
937,166 - ABCV34_RS04290 0.31 +2.1
937,166 - ABCV34_RS04290 0.31 -1.7
937,166 - ABCV34_RS04290 0.31 -1.4
937,166 - ABCV34_RS04290 0.31 -1.4
937,166 - ABCV34_RS04290 0.31 -1.5
937,166 - ABCV34_RS04290 0.31 -0.5
937,397 - ABCV34_RS04290 0.47 -2.6
937,414 + ABCV34_RS04290 0.48 +0.1
937,568 + ABCV34_RS04290 0.59 -0.2
937,582 + ABCV34_RS04290 0.60 -2.4
937,582 + ABCV34_RS04290 0.60 -0.2
937,583 - ABCV34_RS04290 0.60 -0.9
937,583 - ABCV34_RS04290 0.60 +0.9
937,583 - ABCV34_RS04290 0.60 +0.8
937,583 - ABCV34_RS04290 0.60 +2.1

Or see this region's nucleotide sequence