Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS03910 and ABCV34_RS03915 are separated by 18 nucleotides ABCV34_RS03915 and ABCV34_RS03920 are separated by 221 nucleotides
ABCV34_RS03910: ABCV34_RS03910 - OmpA family protein, at 851,677 to 852,939
_RS03910
ABCV34_RS03915: ABCV34_RS03915 - acylphosphatase, at 852,958 to 853,254
_RS03915
ABCV34_RS03920: ABCV34_RS03920 - FAD/NAD(P)-binding oxidoreductase, at 853,476 to 854,738
_RS03920
Position (kb) 852
853
854 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 852.045 kb on + strand, within ABCV34_RS03910 at 852.634 kb on + strand, within ABCV34_RS03910 at 852.691 kb on + strand, within ABCV34_RS03910 at 852.691 kb on + strand, within ABCV34_RS03910 at 852.691 kb on + strand, within ABCV34_RS03910 at 852.691 kb on + strand, within ABCV34_RS03910 at 852.691 kb on + strand, within ABCV34_RS03910 at 852.692 kb on - strand, within ABCV34_RS03910 at 852.692 kb on - strand, within ABCV34_RS03910 at 852.743 kb on - strand, within ABCV34_RS03910 at 852.743 kb on - strand, within ABCV34_RS03910 at 852.980 kb on + strand at 852.980 kb on + strand at 852.980 kb on + strand at 852.981 kb on - strand at 852.981 kb on - strand at 853.139 kb on - strand, within ABCV34_RS03915 at 853.139 kb on - strand, within ABCV34_RS03915 at 853.139 kb on - strand, within ABCV34_RS03915 at 853.243 kb on + strand at 853.243 kb on + strand at 853.244 kb on - strand at 853.244 kb on - strand at 853.270 kb on + strand at 853.270 kb on + strand at 853.270 kb on + strand at 853.271 kb on - strand at 853.271 kb on - strand at 853.271 kb on - strand at 853.271 kb on - strand at 853.271 kb on - strand at 853.367 kb on + strand at 853.367 kb on + strand at 853.368 kb on - strand at 853.375 kb on + strand at 853.376 kb on - strand at 853.376 kb on - strand at 853.412 kb on + strand at 853.412 kb on + strand at 853.413 kb on - strand at 853.413 kb on - strand at 853.785 kb on + strand, within ABCV34_RS03920 at 853.785 kb on + strand, within ABCV34_RS03920 at 853.785 kb on + strand, within ABCV34_RS03920 at 853.785 kb on + strand, within ABCV34_RS03920 at 853.786 kb on - strand, within ABCV34_RS03920 at 853.786 kb on - strand, within ABCV34_RS03920 at 853.791 kb on + strand, within ABCV34_RS03920 at 853.791 kb on + strand, within ABCV34_RS03920 at 853.791 kb on + strand, within ABCV34_RS03920 at 853.791 kb on + strand, within ABCV34_RS03920 at 853.791 kb on + strand, within ABCV34_RS03920 at 853.791 kb on + strand, within ABCV34_RS03920 at 853.792 kb on - strand, within ABCV34_RS03920 at 853.792 kb on - strand, within ABCV34_RS03920 at 853.792 kb on - strand, within ABCV34_RS03920 at 853.799 kb on - strand, within ABCV34_RS03920 at 853.881 kb on + strand, within ABCV34_RS03920 at 853.881 kb on + strand, within ABCV34_RS03920 at 853.882 kb on - strand, within ABCV34_RS03920 at 853.882 kb on - strand, within ABCV34_RS03920 at 853.882 kb on - strand, within ABCV34_RS03920 at 853.882 kb on - strand, within ABCV34_RS03920 at 853.887 kb on + strand, within ABCV34_RS03920 at 853.902 kb on + strand, within ABCV34_RS03920 at 853.902 kb on + strand, within ABCV34_RS03920 at 853.902 kb on + strand, within ABCV34_RS03920 at 853.902 kb on + strand, within ABCV34_RS03920 at 853.902 kb on + strand, within ABCV34_RS03920 at 853.902 kb on + strand, within ABCV34_RS03920 at 853.903 kb on - strand, within ABCV34_RS03920 at 853.903 kb on - strand, within ABCV34_RS03920 at 853.903 kb on - strand, within ABCV34_RS03920 at 853.903 kb on - strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.904 kb on + strand, within ABCV34_RS03920 at 853.905 kb on - strand, within ABCV34_RS03920 at 853.905 kb on - strand, within ABCV34_RS03920 at 853.905 kb on - strand, within ABCV34_RS03920 at 854.001 kb on + strand, within ABCV34_RS03920 at 854.001 kb on + strand, within ABCV34_RS03920 at 854.002 kb on - strand, within ABCV34_RS03920 at 854.002 kb on - strand, within ABCV34_RS03920 at 854.002 kb on - strand, within ABCV34_RS03920 at 854.002 kb on - strand, within ABCV34_RS03920 at 854.095 kb on - strand, within ABCV34_RS03920 at 854.095 kb on - strand, within ABCV34_RS03920 at 854.127 kb on + strand, within ABCV34_RS03920 at 854.128 kb on - strand, within ABCV34_RS03920 at 854.128 kb on - strand, within ABCV34_RS03920 at 854.128 kb on - strand, within ABCV34_RS03920
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 852,045 + ABCV34_RS03910 0.29 -0.5 852,634 + ABCV34_RS03910 0.76 -0.6 852,691 + ABCV34_RS03910 0.80 +1.4 852,691 + ABCV34_RS03910 0.80 -0.8 852,691 + ABCV34_RS03910 0.80 +2.0 852,691 + ABCV34_RS03910 0.80 +1.4 852,691 + ABCV34_RS03910 0.80 -1.7 852,692 - ABCV34_RS03910 0.80 +1.2 852,692 - ABCV34_RS03910 0.80 +0.7 852,743 - ABCV34_RS03910 0.84 +2.1 852,743 - ABCV34_RS03910 0.84 -0.4 852,980 + -1.3 852,980 + -0.9 852,980 + -1.6 852,981 - -0.0 852,981 - -1.7 853,139 - ABCV34_RS03915 0.61 -0.1 853,139 - ABCV34_RS03915 0.61 -1.8 853,139 - ABCV34_RS03915 0.61 +1.7 853,243 + -0.3 853,243 + -3.1 853,244 - -2.8 853,244 - -0.5 853,270 + +0.0 853,270 + +0.1 853,270 + -1.4 853,271 - -1.0 853,271 - -1.5 853,271 - -0.5 853,271 - -1.2 853,271 - -1.4 853,367 + -1.0 853,367 + -2.7 853,368 - +2.2 853,375 + +1.1 853,376 - -0.7 853,376 - -0.2 853,412 + -0.8 853,412 + -1.1 853,413 - -1.9 853,413 - -1.3 853,785 + ABCV34_RS03920 0.24 -1.2 853,785 + ABCV34_RS03920 0.24 -0.6 853,785 + ABCV34_RS03920 0.24 +0.5 853,785 + ABCV34_RS03920 0.24 +0.4 853,786 - ABCV34_RS03920 0.25 -0.2 853,786 - ABCV34_RS03920 0.25 -1.3 853,791 + ABCV34_RS03920 0.25 +1.0 853,791 + ABCV34_RS03920 0.25 +1.2 853,791 + ABCV34_RS03920 0.25 -1.0 853,791 + ABCV34_RS03920 0.25 -0.5 853,791 + ABCV34_RS03920 0.25 -0.7 853,791 + ABCV34_RS03920 0.25 -0.2 853,792 - ABCV34_RS03920 0.25 +0.4 853,792 - ABCV34_RS03920 0.25 -0.2 853,792 - ABCV34_RS03920 0.25 -2.4 853,799 - ABCV34_RS03920 0.26 +2.1 853,881 + ABCV34_RS03920 0.32 +0.4 853,881 + ABCV34_RS03920 0.32 -1.5 853,882 - ABCV34_RS03920 0.32 -1.8 853,882 - ABCV34_RS03920 0.32 -2.0 853,882 - ABCV34_RS03920 0.32 +0.5 853,882 - ABCV34_RS03920 0.32 -1.2 853,887 + ABCV34_RS03920 0.33 -0.9 853,902 + ABCV34_RS03920 0.34 -2.2 853,902 + ABCV34_RS03920 0.34 -0.1 853,902 + ABCV34_RS03920 0.34 +1.1 853,902 + ABCV34_RS03920 0.34 -0.5 853,902 + ABCV34_RS03920 0.34 -3.0 853,902 + ABCV34_RS03920 0.34 -1.6 853,903 - ABCV34_RS03920 0.34 +0.5 853,903 - ABCV34_RS03920 0.34 +0.7 853,903 - ABCV34_RS03920 0.34 +0.9 853,903 - ABCV34_RS03920 0.34 -1.4 853,904 + ABCV34_RS03920 0.34 +0.5 853,904 + ABCV34_RS03920 0.34 -0.8 853,904 + ABCV34_RS03920 0.34 -0.7 853,904 + ABCV34_RS03920 0.34 +0.4 853,904 + ABCV34_RS03920 0.34 +0.0 853,904 + ABCV34_RS03920 0.34 -2.2 853,904 + ABCV34_RS03920 0.34 +3.7 853,904 + ABCV34_RS03920 0.34 -0.1 853,904 + ABCV34_RS03920 0.34 -0.5 853,905 - ABCV34_RS03920 0.34 -0.7 853,905 - ABCV34_RS03920 0.34 -1.7 853,905 - ABCV34_RS03920 0.34 -1.4 854,001 + ABCV34_RS03920 0.42 -1.0 854,001 + ABCV34_RS03920 0.42 -0.6 854,002 - ABCV34_RS03920 0.42 -1.1 854,002 - ABCV34_RS03920 0.42 +3.1 854,002 - ABCV34_RS03920 0.42 -1.1 854,002 - ABCV34_RS03920 0.42 -0.9 854,095 - ABCV34_RS03920 0.49 -1.6 854,095 - ABCV34_RS03920 0.49 -1.8 854,127 + ABCV34_RS03920 0.52 -1.4 854,128 - ABCV34_RS03920 0.52 -0.1 854,128 - ABCV34_RS03920 0.52 -2.6 854,128 - ABCV34_RS03920 0.52 +1.2
Or see this region's nucleotide sequence