Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS03645 and ABCV34_RS03650 are separated by 63 nucleotides ABCV34_RS03650 and ABCV34_RS03655 are separated by 58 nucleotides
ABCV34_RS03645: ABCV34_RS03645 - D-2-hydroxyacid dehydrogenase, at 799,550 to 800,524
_RS03645
ABCV34_RS03650: ABCV34_RS03650 - glyceraldehyde 3-phosphate dehydrogenase NAD-binding domain-containing protein, at 800,588 to 801,637
_RS03650
ABCV34_RS03655: ABCV34_RS03655 - class II fumarate hydratase, at 801,696 to 803,099
_RS03655
Position (kb) 800
801
802 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 799.680 kb on + strand, within ABCV34_RS03645 at 799.693 kb on + strand, within ABCV34_RS03645 at 799.693 kb on + strand, within ABCV34_RS03645 at 799.713 kb on + strand, within ABCV34_RS03645 at 799.713 kb on + strand, within ABCV34_RS03645 at 799.713 kb on + strand, within ABCV34_RS03645 at 799.713 kb on + strand, within ABCV34_RS03645 at 799.713 kb on + strand, within ABCV34_RS03645 at 799.713 kb on + strand, within ABCV34_RS03645 at 799.714 kb on - strand, within ABCV34_RS03645 at 799.714 kb on - strand, within ABCV34_RS03645 at 799.714 kb on - strand, within ABCV34_RS03645 at 799.844 kb on + strand, within ABCV34_RS03645 at 799.845 kb on - strand, within ABCV34_RS03645 at 799.855 kb on + strand, within ABCV34_RS03645 at 799.855 kb on + strand, within ABCV34_RS03645 at 799.856 kb on - strand, within ABCV34_RS03645 at 799.856 kb on - strand, within ABCV34_RS03645 at 799.856 kb on - strand, within ABCV34_RS03645 at 799.856 kb on - strand, within ABCV34_RS03645 at 799.856 kb on - strand, within ABCV34_RS03645 at 799.870 kb on + strand, within ABCV34_RS03645 at 799.871 kb on - strand, within ABCV34_RS03645 at 799.871 kb on - strand, within ABCV34_RS03645 at 799.871 kb on - strand, within ABCV34_RS03645 at 799.871 kb on - strand, within ABCV34_RS03645 at 799.871 kb on - strand, within ABCV34_RS03645 at 799.871 kb on - strand, within ABCV34_RS03645 at 799.871 kb on - strand, within ABCV34_RS03645 at 799.964 kb on + strand, within ABCV34_RS03645 at 799.964 kb on + strand, within ABCV34_RS03645 at 799.965 kb on - strand, within ABCV34_RS03645 at 799.965 kb on - strand, within ABCV34_RS03645 at 799.965 kb on - strand, within ABCV34_RS03645 at 799.965 kb on - strand, within ABCV34_RS03645 at 799.965 kb on - strand, within ABCV34_RS03645 at 800.117 kb on + strand, within ABCV34_RS03645 at 800.117 kb on + strand, within ABCV34_RS03645 at 800.117 kb on + strand, within ABCV34_RS03645 at 800.117 kb on + strand, within ABCV34_RS03645 at 800.117 kb on + strand, within ABCV34_RS03645 at 800.118 kb on - strand, within ABCV34_RS03645 at 800.118 kb on - strand, within ABCV34_RS03645 at 800.118 kb on - strand, within ABCV34_RS03645 at 800.118 kb on - strand, within ABCV34_RS03645 at 800.276 kb on + strand, within ABCV34_RS03645 at 800.277 kb on - strand, within ABCV34_RS03645 at 800.277 kb on - strand, within ABCV34_RS03645 at 800.553 kb on + strand at 800.553 kb on + strand at 800.554 kb on - strand at 800.554 kb on - strand at 800.554 kb on - strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.686 kb on + strand at 800.687 kb on - strand at 800.687 kb on - strand at 800.687 kb on - strand at 800.687 kb on - strand at 800.687 kb on - strand at 800.687 kb on - strand at 800.687 kb on - strand at 800.729 kb on + strand, within ABCV34_RS03650 at 800.729 kb on + strand, within ABCV34_RS03650 at 800.729 kb on + strand, within ABCV34_RS03650 at 800.729 kb on + strand, within ABCV34_RS03650 at 800.730 kb on - strand, within ABCV34_RS03650 at 800.730 kb on - strand, within ABCV34_RS03650 at 800.730 kb on - strand, within ABCV34_RS03650 at 800.900 kb on + strand, within ABCV34_RS03650 at 800.900 kb on + strand, within ABCV34_RS03650 at 801.043 kb on + strand, within ABCV34_RS03650 at 801.043 kb on + strand, within ABCV34_RS03650 at 801.043 kb on + strand, within ABCV34_RS03650 at 801.043 kb on + strand, within ABCV34_RS03650 at 801.043 kb on + strand, within ABCV34_RS03650 at 801.043 kb on + strand, within ABCV34_RS03650 at 801.043 kb on + strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.044 kb on - strand, within ABCV34_RS03650 at 801.229 kb on - strand, within ABCV34_RS03650 at 801.229 kb on - strand, within ABCV34_RS03650 at 801.385 kb on + strand, within ABCV34_RS03650 at 801.385 kb on + strand, within ABCV34_RS03650 at 801.385 kb on + strand, within ABCV34_RS03650 at 801.385 kb on + strand, within ABCV34_RS03650 at 801.386 kb on - strand, within ABCV34_RS03650 at 801.386 kb on - strand, within ABCV34_RS03650 at 801.386 kb on - strand, within ABCV34_RS03650 at 801.386 kb on - strand, within ABCV34_RS03650 at 801.409 kb on + strand, within ABCV34_RS03650 at 801.409 kb on + strand, within ABCV34_RS03650 at 801.409 kb on + strand, within ABCV34_RS03650 at 801.410 kb on - strand, within ABCV34_RS03650 at 801.410 kb on - strand, within ABCV34_RS03650 at 801.410 kb on - strand, within ABCV34_RS03650 at 801.410 kb on - strand, within ABCV34_RS03650 at 801.410 kb on - strand, within ABCV34_RS03650 at 801.514 kb on + strand, within ABCV34_RS03650 at 801.514 kb on + strand, within ABCV34_RS03650 at 801.515 kb on - strand, within ABCV34_RS03650 at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.756 kb on + strand at 801.757 kb on - strand at 801.757 kb on - strand at 802.368 kb on + strand, within ABCV34_RS03655 at 802.368 kb on + strand, within ABCV34_RS03655 at 802.368 kb on + strand, within ABCV34_RS03655 at 802.368 kb on + strand, within ABCV34_RS03655 at 802.368 kb on + strand, within ABCV34_RS03655 at 802.368 kb on + strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655 at 802.369 kb on - strand, within ABCV34_RS03655
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 799,680 + ABCV34_RS03645 0.13 -1.4 799,693 + ABCV34_RS03645 0.15 -2.2 799,693 + ABCV34_RS03645 0.15 +0.5 799,713 + ABCV34_RS03645 0.17 -0.1 799,713 + ABCV34_RS03645 0.17 +0.7 799,713 + ABCV34_RS03645 0.17 -2.2 799,713 + ABCV34_RS03645 0.17 -0.9 799,713 + ABCV34_RS03645 0.17 -0.1 799,713 + ABCV34_RS03645 0.17 -0.1 799,714 - ABCV34_RS03645 0.17 +0.4 799,714 - ABCV34_RS03645 0.17 -0.2 799,714 - ABCV34_RS03645 0.17 -2.2 799,844 + ABCV34_RS03645 0.30 -2.0 799,845 - ABCV34_RS03645 0.30 -3.6 799,855 + ABCV34_RS03645 0.31 -1.1 799,855 + ABCV34_RS03645 0.31 -3.1 799,856 - ABCV34_RS03645 0.31 -2.8 799,856 - ABCV34_RS03645 0.31 +0.4 799,856 - ABCV34_RS03645 0.31 +1.1 799,856 - ABCV34_RS03645 0.31 -2.5 799,856 - ABCV34_RS03645 0.31 -1.0 799,870 + ABCV34_RS03645 0.33 +1.5 799,871 - ABCV34_RS03645 0.33 +0.2 799,871 - ABCV34_RS03645 0.33 -0.2 799,871 - ABCV34_RS03645 0.33 -0.1 799,871 - ABCV34_RS03645 0.33 +0.3 799,871 - ABCV34_RS03645 0.33 +1.3 799,871 - ABCV34_RS03645 0.33 -0.2 799,871 - ABCV34_RS03645 0.33 -0.1 799,964 + ABCV34_RS03645 0.42 -4.0 799,964 + ABCV34_RS03645 0.42 -1.2 799,965 - ABCV34_RS03645 0.43 -1.3 799,965 - ABCV34_RS03645 0.43 -2.2 799,965 - ABCV34_RS03645 0.43 +0.7 799,965 - ABCV34_RS03645 0.43 -0.7 799,965 - ABCV34_RS03645 0.43 -1.4 800,117 + ABCV34_RS03645 0.58 +0.3 800,117 + ABCV34_RS03645 0.58 -1.6 800,117 + ABCV34_RS03645 0.58 -0.5 800,117 + ABCV34_RS03645 0.58 -0.6 800,117 + ABCV34_RS03645 0.58 -0.8 800,118 - ABCV34_RS03645 0.58 -1.1 800,118 - ABCV34_RS03645 0.58 -0.6 800,118 - ABCV34_RS03645 0.58 -0.9 800,118 - ABCV34_RS03645 0.58 -1.7 800,276 + ABCV34_RS03645 0.74 -1.9 800,277 - ABCV34_RS03645 0.75 -1.1 800,277 - ABCV34_RS03645 0.75 +0.2 800,553 + +1.1 800,553 + +1.0 800,554 - -0.7 800,554 - -1.3 800,554 - -0.3 800,686 + -2.5 800,686 + -1.2 800,686 + -1.8 800,686 + -0.8 800,686 + -0.6 800,686 + +0.5 800,686 + -1.1 800,686 + -0.8 800,686 + +0.6 800,686 + -0.1 800,687 - -0.9 800,687 - -1.6 800,687 - +1.3 800,687 - -2.7 800,687 - +1.4 800,687 - -1.6 800,687 - -2.0 800,729 + ABCV34_RS03650 0.13 -0.9 800,729 + ABCV34_RS03650 0.13 +0.4 800,729 + ABCV34_RS03650 0.13 +1.2 800,729 + ABCV34_RS03650 0.13 -1.4 800,730 - ABCV34_RS03650 0.14 -0.2 800,730 - ABCV34_RS03650 0.14 +0.8 800,730 - ABCV34_RS03650 0.14 -0.3 800,900 + ABCV34_RS03650 0.30 +1.6 800,900 + ABCV34_RS03650 0.30 +2.1 801,043 + ABCV34_RS03650 0.43 -2.1 801,043 + ABCV34_RS03650 0.43 +0.2 801,043 + ABCV34_RS03650 0.43 -1.5 801,043 + ABCV34_RS03650 0.43 -2.9 801,043 + ABCV34_RS03650 0.43 -1.0 801,043 + ABCV34_RS03650 0.43 -0.4 801,043 + ABCV34_RS03650 0.43 -2.0 801,044 - ABCV34_RS03650 0.43 +0.1 801,044 - ABCV34_RS03650 0.43 +0.5 801,044 - ABCV34_RS03650 0.43 +1.2 801,044 - ABCV34_RS03650 0.43 +0.0 801,044 - ABCV34_RS03650 0.43 -0.2 801,044 - ABCV34_RS03650 0.43 -3.2 801,044 - ABCV34_RS03650 0.43 +1.0 801,044 - ABCV34_RS03650 0.43 -1.6 801,044 - ABCV34_RS03650 0.43 -1.1 801,229 - ABCV34_RS03650 0.61 -0.7 801,229 - ABCV34_RS03650 0.61 -1.3 801,385 + ABCV34_RS03650 0.76 -2.3 801,385 + ABCV34_RS03650 0.76 +0.6 801,385 + ABCV34_RS03650 0.76 -1.7 801,385 + ABCV34_RS03650 0.76 -0.7 801,386 - ABCV34_RS03650 0.76 -0.2 801,386 - ABCV34_RS03650 0.76 +1.1 801,386 - ABCV34_RS03650 0.76 -1.4 801,386 - ABCV34_RS03650 0.76 -3.0 801,409 + ABCV34_RS03650 0.78 +1.6 801,409 + ABCV34_RS03650 0.78 +0.5 801,409 + ABCV34_RS03650 0.78 +0.3 801,410 - ABCV34_RS03650 0.78 -1.8 801,410 - ABCV34_RS03650 0.78 -0.8 801,410 - ABCV34_RS03650 0.78 -1.5 801,410 - ABCV34_RS03650 0.78 +0.2 801,410 - ABCV34_RS03650 0.78 -0.7 801,514 + ABCV34_RS03650 0.88 -0.4 801,514 + ABCV34_RS03650 0.88 -2.3 801,515 - ABCV34_RS03650 0.88 -0.2 801,756 + -1.3 801,756 + -1.9 801,756 + -0.5 801,756 + -1.9 801,757 - +0.3 801,757 - +0.9 802,368 + ABCV34_RS03655 0.48 -2.8 802,368 + ABCV34_RS03655 0.48 -1.4 802,368 + ABCV34_RS03655 0.48 -1.3 802,368 + ABCV34_RS03655 0.48 -0.7 802,368 + ABCV34_RS03655 0.48 -3.6 802,368 + ABCV34_RS03655 0.48 -1.6 802,369 - ABCV34_RS03655 0.48 +0.2 802,369 - ABCV34_RS03655 0.48 -2.9 802,369 - ABCV34_RS03655 0.48 -0.3 802,369 - ABCV34_RS03655 0.48 -1.5 802,369 - ABCV34_RS03655 0.48 -2.1 802,369 - ABCV34_RS03655 0.48 -0.9 802,369 - ABCV34_RS03655 0.48 -1.2 802,369 - ABCV34_RS03655 0.48 -1.6 802,369 - ABCV34_RS03655 0.48 -0.2 802,369 - ABCV34_RS03655 0.48 +0.1
Or see this region's nucleotide sequence