Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS03180 and ABCV34_RS03185 are separated by 343 nucleotides ABCV34_RS03185 and ABCV34_RS03190 are separated by 2 nucleotides ABCV34_RS03190 and ABCV34_RS03195 are separated by 23 nucleotides ABCV34_RS03195 and ABCV34_RS03200 are separated by 36 nucleotides
ABCV34_RS03180: ABCV34_RS03180 - copper-translocating P-type ATPase, at 707,073 to 709,505
_RS03180
ABCV34_RS03185: ABCV34_RS03185 - TPM domain-containing protein, at 709,849 to 710,349
_RS03185
ABCV34_RS03190: ABCV34_RS03190 - TPM domain-containing protein, at 710,352 to 711,182
_RS03190
ABCV34_RS03195: ABCV34_RS03195 - LemA family protein, at 711,206 to 711,838
_RS03195
ABCV34_RS03200: ABCV34_RS03200 - cytochrome D1 domain-containing protein, at 711,875 to 712,942
_RS03200
Position (kb) 710
711
712 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 709.420 kb on + strand at 709.420 kb on + strand at 709.420 kb on + strand at 709.420 kb on + strand at 709.420 kb on + strand at 709.420 kb on + strand at 709.420 kb on + strand at 709.420 kb on + strand at 709.420 kb on + strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.421 kb on - strand at 709.438 kb on + strand at 709.438 kb on + strand at 709.438 kb on + strand at 709.438 kb on + strand at 709.438 kb on + strand at 709.438 kb on + strand at 709.439 kb on - strand at 709.439 kb on - strand at 709.439 kb on - strand at 709.439 kb on - strand at 709.457 kb on + strand at 709.485 kb on + strand at 709.485 kb on + strand at 709.485 kb on + strand at 709.485 kb on + strand at 709.485 kb on + strand at 709.520 kb on + strand at 709.520 kb on + strand at 709.529 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.544 kb on + strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.545 kb on - strand at 709.568 kb on + strand at 709.569 kb on - strand at 709.569 kb on - strand at 709.569 kb on - strand at 709.584 kb on - strand at 709.604 kb on + strand at 709.604 kb on + strand at 709.605 kb on - strand at 709.605 kb on - strand at 709.605 kb on - strand at 709.605 kb on - strand at 709.636 kb on - strand at 709.638 kb on + strand at 709.638 kb on + strand at 709.638 kb on + strand at 709.638 kb on + strand at 709.639 kb on - strand at 709.639 kb on - strand at 709.639 kb on - strand at 709.639 kb on - strand at 709.656 kb on - strand at 709.656 kb on - strand at 709.656 kb on - strand at 709.666 kb on + strand at 709.666 kb on + strand at 709.667 kb on - strand at 709.667 kb on - strand at 709.667 kb on - strand at 709.667 kb on - strand at 709.667 kb on - strand at 709.667 kb on - strand at 709.667 kb on - strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.668 kb on + strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.669 kb on - strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.670 kb on + strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.671 kb on - strand at 709.678 kb on + strand at 709.725 kb on + strand at 709.726 kb on - strand at 709.859 kb on - strand at 709.859 kb on - strand at 709.889 kb on + strand at 709.915 kb on + strand, within ABCV34_RS03185 at 710.087 kb on + strand, within ABCV34_RS03185 at 710.087 kb on + strand, within ABCV34_RS03185 at 710.087 kb on + strand, within ABCV34_RS03185 at 710.087 kb on + strand, within ABCV34_RS03185 at 710.088 kb on - strand, within ABCV34_RS03185 at 710.088 kb on - strand, within ABCV34_RS03185 at 710.088 kb on - strand, within ABCV34_RS03185 at 710.088 kb on - strand, within ABCV34_RS03185 at 710.088 kb on - strand, within ABCV34_RS03185 at 710.088 kb on - strand, within ABCV34_RS03185 at 710.303 kb on + strand at 710.303 kb on + strand at 710.303 kb on + strand at 710.303 kb on + strand at 710.303 kb on + strand at 710.303 kb on + strand at 710.303 kb on + strand at 710.304 kb on - strand at 710.304 kb on - strand at 710.304 kb on - strand at 710.304 kb on - strand at 710.439 kb on + strand, within ABCV34_RS03190 at 710.439 kb on + strand, within ABCV34_RS03190 at 710.439 kb on + strand, within ABCV34_RS03190 at 710.439 kb on + strand, within ABCV34_RS03190 at 710.439 kb on + strand, within ABCV34_RS03190 at 710.440 kb on - strand, within ABCV34_RS03190 at 710.440 kb on - strand, within ABCV34_RS03190 at 710.440 kb on - strand, within ABCV34_RS03190 at 710.440 kb on - strand, within ABCV34_RS03190 at 710.440 kb on - strand, within ABCV34_RS03190 at 710.440 kb on - strand, within ABCV34_RS03190 at 710.440 kb on - strand, within ABCV34_RS03190 at 710.591 kb on + strand, within ABCV34_RS03190 at 710.591 kb on + strand, within ABCV34_RS03190 at 710.591 kb on + strand, within ABCV34_RS03190 at 710.592 kb on - strand, within ABCV34_RS03190 at 710.592 kb on - strand, within ABCV34_RS03190 at 710.592 kb on - strand, within ABCV34_RS03190 at 710.592 kb on - strand, within ABCV34_RS03190 at 710.592 kb on - strand, within ABCV34_RS03190 at 710.595 kb on + strand, within ABCV34_RS03190 at 710.595 kb on + strand, within ABCV34_RS03190 at 710.596 kb on - strand, within ABCV34_RS03190 at 710.596 kb on - strand, within ABCV34_RS03190 at 710.596 kb on - strand, within ABCV34_RS03190 at 710.729 kb on + strand, within ABCV34_RS03190 at 710.761 kb on + strand, within ABCV34_RS03190 at 710.761 kb on + strand, within ABCV34_RS03190 at 710.762 kb on - strand, within ABCV34_RS03190 at 710.762 kb on - strand, within ABCV34_RS03190 at 710.805 kb on - strand, within ABCV34_RS03190 at 710.849 kb on - strand, within ABCV34_RS03190 at 710.849 kb on - strand, within ABCV34_RS03190 at 711.190 kb on - strand at 711.281 kb on + strand, within ABCV34_RS03195 at 711.281 kb on + strand, within ABCV34_RS03195 at 711.281 kb on + strand, within ABCV34_RS03195 at 711.281 kb on + strand, within ABCV34_RS03195 at 711.282 kb on - strand, within ABCV34_RS03195 at 711.282 kb on - strand, within ABCV34_RS03195 at 711.324 kb on + strand, within ABCV34_RS03195 at 711.324 kb on + strand, within ABCV34_RS03195 at 711.325 kb on - strand, within ABCV34_RS03195 at 711.325 kb on - strand, within ABCV34_RS03195 at 711.378 kb on + strand, within ABCV34_RS03195 at 711.378 kb on + strand, within ABCV34_RS03195 at 711.378 kb on + strand, within ABCV34_RS03195 at 711.378 kb on + strand, within ABCV34_RS03195 at 711.379 kb on - strand, within ABCV34_RS03195 at 711.397 kb on + strand, within ABCV34_RS03195 at 711.397 kb on + strand, within ABCV34_RS03195 at 711.397 kb on + strand, within ABCV34_RS03195 at 711.397 kb on + strand, within ABCV34_RS03195 at 711.397 kb on + strand, within ABCV34_RS03195 at 711.397 kb on + strand, within ABCV34_RS03195 at 711.397 kb on + strand, within ABCV34_RS03195 at 711.398 kb on - strand, within ABCV34_RS03195 at 711.398 kb on - strand, within ABCV34_RS03195 at 711.398 kb on - strand, within ABCV34_RS03195 at 711.398 kb on - strand, within ABCV34_RS03195 at 711.398 kb on - strand, within ABCV34_RS03195 at 711.398 kb on - strand, within ABCV34_RS03195 at 711.398 kb on - strand, within ABCV34_RS03195 at 711.400 kb on - strand, within ABCV34_RS03195 at 711.490 kb on - strand, within ABCV34_RS03195 at 711.490 kb on - strand, within ABCV34_RS03195 at 711.714 kb on + strand, within ABCV34_RS03195 at 711.714 kb on + strand, within ABCV34_RS03195 at 711.715 kb on - strand, within ABCV34_RS03195 at 711.778 kb on - strand at 711.778 kb on - strand at 711.876 kb on + strand at 711.877 kb on - strand at 711.892 kb on - strand at 711.892 kb on - strand at 711.892 kb on - strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.895 kb on + strand at 711.896 kb on - strand at 711.896 kb on - strand at 711.896 kb on - strand at 711.896 kb on - strand at 711.896 kb on - strand at 711.896 kb on - strand at 711.896 kb on - strand at 711.924 kb on + strand at 711.924 kb on + strand at 711.924 kb on + strand at 711.924 kb on + strand at 711.925 kb on - strand at 711.925 kb on - strand at 712.134 kb on + strand, within ABCV34_RS03200 at 712.134 kb on + strand, within ABCV34_RS03200 at 712.134 kb on + strand, within ABCV34_RS03200 at 712.134 kb on + strand, within ABCV34_RS03200 at 712.134 kb on + strand, within ABCV34_RS03200 at 712.135 kb on - strand, within ABCV34_RS03200 at 712.135 kb on - strand, within ABCV34_RS03200 at 712.161 kb on + strand, within ABCV34_RS03200 at 712.161 kb on + strand, within ABCV34_RS03200 at 712.161 kb on + strand, within ABCV34_RS03200 at 712.162 kb on - strand, within ABCV34_RS03200 at 712.162 kb on - strand, within ABCV34_RS03200 at 712.162 kb on - strand, within ABCV34_RS03200 at 712.162 kb on - strand, within ABCV34_RS03200 at 712.163 kb on + strand, within ABCV34_RS03200 at 712.163 kb on + strand, within ABCV34_RS03200 at 712.163 kb on + strand, within ABCV34_RS03200 at 712.163 kb on + strand, within ABCV34_RS03200 at 712.163 kb on + strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200 at 712.164 kb on - strand, within ABCV34_RS03200
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 709,420 + +0.5 709,420 + +0.0 709,420 + +0.6 709,420 + -0.1 709,420 + -0.5 709,420 + -1.9 709,420 + +2.1 709,420 + -2.4 709,420 + -3.5 709,421 - +0.7 709,421 - -1.5 709,421 - -1.3 709,421 - -1.4 709,421 - -1.4 709,421 - -1.5 709,421 - -2.4 709,421 - -1.5 709,421 - -0.7 709,438 + +0.1 709,438 + -0.4 709,438 + -0.0 709,438 + -1.4 709,438 + -1.9 709,438 + -3.0 709,439 - -3.3 709,439 - -1.3 709,439 - -2.7 709,439 - -0.1 709,457 + -0.3 709,485 + -0.8 709,485 + +0.7 709,485 + -1.1 709,485 + -0.2 709,485 + +0.5 709,520 + -1.8 709,520 + -0.7 709,529 + -0.6 709,544 + -2.3 709,544 + -1.3 709,544 + -1.8 709,544 + -1.8 709,544 + -1.1 709,544 + -2.3 709,544 + -0.9 709,544 + -1.1 709,544 + +0.2 709,545 - -1.3 709,545 - -1.3 709,545 - -3.8 709,545 - +1.2 709,545 - +0.1 709,545 - -0.3 709,545 - -0.4 709,545 - -1.5 709,545 - +0.0 709,568 + -1.9 709,569 - -2.0 709,569 - +0.7 709,569 - +0.8 709,584 - -1.3 709,604 + -0.2 709,604 + +1.9 709,605 - -0.5 709,605 - -1.1 709,605 - -2.3 709,605 - -1.6 709,636 - -1.0 709,638 + -1.3 709,638 + -1.1 709,638 + -0.5 709,638 + -2.3 709,639 - -1.3 709,639 - +0.4 709,639 - -1.5 709,639 - -0.4 709,656 - -1.6 709,656 - -2.0 709,656 - +1.4 709,666 + -0.8 709,666 + -0.3 709,667 - -0.3 709,667 - -4.2 709,667 - -2.8 709,667 - -0.3 709,667 - -0.7 709,667 - -2.5 709,667 - -1.5 709,668 + -0.7 709,668 + -1.7 709,668 + -0.4 709,668 + +0.5 709,668 + -2.7 709,668 + +0.0 709,668 + -1.8 709,668 + -2.7 709,668 + +1.3 709,668 + -1.5 709,668 + -3.5 709,668 + -2.8 709,669 - -3.3 709,669 - -1.4 709,669 - -0.4 709,669 - -0.7 709,669 - -0.5 709,669 - -0.4 709,669 - -1.1 709,669 - -0.4 709,669 - -1.5 709,670 + +0.1 709,670 + -0.2 709,670 + -0.3 709,670 + -1.1 709,670 + -2.3 709,670 + -1.7 709,670 + -1.4 709,670 + +1.7 709,670 + -2.0 709,670 + +1.9 709,670 + -3.0 709,670 + -1.1 709,670 + -2.5 709,670 + -0.2 709,670 + -2.7 709,670 + -1.3 709,670 + +0.1 709,670 + +0.1 709,671 - -1.4 709,671 - -1.4 709,671 - -1.4 709,671 - -0.7 709,671 - -0.8 709,671 - -3.0 709,671 - -4.3 709,671 - -3.0 709,671 - -0.7 709,671 - -1.7 709,671 - -1.1 709,678 + -4.4 709,725 + -2.0 709,726 - -1.5 709,859 - -1.1 709,859 - -1.7 709,889 + -1.3 709,915 + ABCV34_RS03185 0.13 -2.1 710,087 + ABCV34_RS03185 0.48 -1.3 710,087 + ABCV34_RS03185 0.48 -1.6 710,087 + ABCV34_RS03185 0.48 +2.1 710,087 + ABCV34_RS03185 0.48 -0.1 710,088 - ABCV34_RS03185 0.48 -1.4 710,088 - ABCV34_RS03185 0.48 -0.3 710,088 - ABCV34_RS03185 0.48 -0.5 710,088 - ABCV34_RS03185 0.48 -0.8 710,088 - ABCV34_RS03185 0.48 -0.1 710,088 - ABCV34_RS03185 0.48 -1.6 710,303 + -0.5 710,303 + -2.3 710,303 + -2.9 710,303 + -0.6 710,303 + +0.0 710,303 + -1.6 710,303 + +0.7 710,304 - -1.3 710,304 - -1.6 710,304 - -1.6 710,304 - -0.5 710,439 + ABCV34_RS03190 0.10 +0.7 710,439 + ABCV34_RS03190 0.10 -0.9 710,439 + ABCV34_RS03190 0.10 -0.7 710,439 + ABCV34_RS03190 0.10 +0.1 710,439 + ABCV34_RS03190 0.10 -1.4 710,440 - ABCV34_RS03190 0.11 -1.7 710,440 - ABCV34_RS03190 0.11 -0.5 710,440 - ABCV34_RS03190 0.11 -0.4 710,440 - ABCV34_RS03190 0.11 -2.5 710,440 - ABCV34_RS03190 0.11 -0.4 710,440 - ABCV34_RS03190 0.11 +0.9 710,440 - ABCV34_RS03190 0.11 -1.0 710,591 + ABCV34_RS03190 0.29 +0.5 710,591 + ABCV34_RS03190 0.29 -0.0 710,591 + ABCV34_RS03190 0.29 +0.4 710,592 - ABCV34_RS03190 0.29 -1.3 710,592 - ABCV34_RS03190 0.29 -0.1 710,592 - ABCV34_RS03190 0.29 -0.6 710,592 - ABCV34_RS03190 0.29 -0.7 710,592 - ABCV34_RS03190 0.29 +0.2 710,595 + ABCV34_RS03190 0.29 -0.7 710,595 + ABCV34_RS03190 0.29 -0.3 710,596 - ABCV34_RS03190 0.29 +0.2 710,596 - ABCV34_RS03190 0.29 +0.4 710,596 - ABCV34_RS03190 0.29 -1.7 710,729 + ABCV34_RS03190 0.45 +0.1 710,761 + ABCV34_RS03190 0.49 +0.1 710,761 + ABCV34_RS03190 0.49 -1.8 710,762 - ABCV34_RS03190 0.49 -1.8 710,762 - ABCV34_RS03190 0.49 -0.8 710,805 - ABCV34_RS03190 0.55 -0.8 710,849 - ABCV34_RS03190 0.60 -0.3 710,849 - ABCV34_RS03190 0.60 +0.8 711,190 - -2.0 711,281 + ABCV34_RS03195 0.12 -0.8 711,281 + ABCV34_RS03195 0.12 -1.5 711,281 + ABCV34_RS03195 0.12 -2.7 711,281 + ABCV34_RS03195 0.12 -0.7 711,282 - ABCV34_RS03195 0.12 -0.4 711,282 - ABCV34_RS03195 0.12 +0.3 711,324 + ABCV34_RS03195 0.19 +0.0 711,324 + ABCV34_RS03195 0.19 +0.1 711,325 - ABCV34_RS03195 0.19 -0.3 711,325 - ABCV34_RS03195 0.19 -1.8 711,378 + ABCV34_RS03195 0.27 -0.9 711,378 + ABCV34_RS03195 0.27 -1.8 711,378 + ABCV34_RS03195 0.27 -2.1 711,378 + ABCV34_RS03195 0.27 -1.2 711,379 - ABCV34_RS03195 0.27 -2.6 711,397 + ABCV34_RS03195 0.30 -2.1 711,397 + ABCV34_RS03195 0.30 +0.6 711,397 + ABCV34_RS03195 0.30 -1.7 711,397 + ABCV34_RS03195 0.30 -3.2 711,397 + ABCV34_RS03195 0.30 +1.7 711,397 + ABCV34_RS03195 0.30 -1.7 711,397 + ABCV34_RS03195 0.30 +0.2 711,398 - ABCV34_RS03195 0.30 -0.7 711,398 - ABCV34_RS03195 0.30 +1.1 711,398 - ABCV34_RS03195 0.30 +0.7 711,398 - ABCV34_RS03195 0.30 +2.1 711,398 - ABCV34_RS03195 0.30 -0.0 711,398 - ABCV34_RS03195 0.30 -1.5 711,398 - ABCV34_RS03195 0.30 -1.1 711,400 - ABCV34_RS03195 0.31 -0.3 711,490 - ABCV34_RS03195 0.45 +0.2 711,490 - ABCV34_RS03195 0.45 -2.4 711,714 + ABCV34_RS03195 0.80 -1.6 711,714 + ABCV34_RS03195 0.80 +0.1 711,715 - ABCV34_RS03195 0.80 +0.5 711,778 - +2.5 711,778 - -2.0 711,876 + -2.6 711,877 - -0.5 711,892 - -1.5 711,892 - -1.7 711,892 - -1.9 711,895 + +0.5 711,895 + +0.1 711,895 + -2.6 711,895 + +1.2 711,895 + -3.3 711,895 + +0.2 711,895 + -2.6 711,895 + -2.1 711,895 + -1.8 711,896 - -1.5 711,896 - -0.3 711,896 - -3.6 711,896 - +0.8 711,896 - -0.4 711,896 - +0.5 711,896 - +1.2 711,924 + -1.0 711,924 + -2.1 711,924 + -0.6 711,924 + -0.5 711,925 - +0.4 711,925 - +2.7 712,134 + ABCV34_RS03200 0.24 -0.9 712,134 + ABCV34_RS03200 0.24 -1.5 712,134 + ABCV34_RS03200 0.24 -1.4 712,134 + ABCV34_RS03200 0.24 -0.5 712,134 + ABCV34_RS03200 0.24 -0.1 712,135 - ABCV34_RS03200 0.24 -2.3 712,135 - ABCV34_RS03200 0.24 -4.1 712,161 + ABCV34_RS03200 0.27 -0.7 712,161 + ABCV34_RS03200 0.27 -0.4 712,161 + ABCV34_RS03200 0.27 +1.2 712,162 - ABCV34_RS03200 0.27 -2.6 712,162 - ABCV34_RS03200 0.27 -2.0 712,162 - ABCV34_RS03200 0.27 +0.1 712,162 - ABCV34_RS03200 0.27 -1.7 712,163 + ABCV34_RS03200 0.27 -1.3 712,163 + ABCV34_RS03200 0.27 -0.2 712,163 + ABCV34_RS03200 0.27 -1.7 712,163 + ABCV34_RS03200 0.27 -1.3 712,163 + ABCV34_RS03200 0.27 -0.9 712,164 - ABCV34_RS03200 0.27 +0.5 712,164 - ABCV34_RS03200 0.27 -0.8 712,164 - ABCV34_RS03200 0.27 -0.4 712,164 - ABCV34_RS03200 0.27 -2.3 712,164 - ABCV34_RS03200 0.27 -1.1 712,164 - ABCV34_RS03200 0.27 -1.2 712,164 - ABCV34_RS03200 0.27 -1.4 712,164 - ABCV34_RS03200 0.27 -0.8
Or see this region's nucleotide sequence