Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02900 and ABCV34_RS02905 overlap by 4 nucleotides ABCV34_RS02905 and ABCV34_RS02910 are separated by 246 nucleotides
ABCV34_RS02900: ABCV34_RS02900 - benzoate/H(+) symporter BenE family transporter, at 645,672 to 646,862
_RS02900
ABCV34_RS02905: ABCV34_RS02905 - HDOD domain-containing protein, at 646,859 to 648,139
_RS02905
ABCV34_RS02910: ABCV34_RS02910 - aminotransferase class V-fold PLP-dependent enzyme, at 648,386 to 649,513
_RS02910
Position (kb) 646
647
648
649 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 645.943 kb on + strand, within ABCV34_RS02900 at 645.943 kb on + strand, within ABCV34_RS02900 at 645.943 kb on + strand, within ABCV34_RS02900 at 645.944 kb on - strand, within ABCV34_RS02900 at 645.944 kb on - strand, within ABCV34_RS02900 at 645.944 kb on - strand, within ABCV34_RS02900 at 645.944 kb on - strand, within ABCV34_RS02900 at 645.973 kb on + strand, within ABCV34_RS02900 at 645.973 kb on + strand, within ABCV34_RS02900 at 645.973 kb on + strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 645.974 kb on - strand, within ABCV34_RS02900 at 646.042 kb on + strand, within ABCV34_RS02900 at 646.042 kb on + strand, within ABCV34_RS02900 at 646.043 kb on - strand, within ABCV34_RS02900 at 646.043 kb on - strand, within ABCV34_RS02900 at 646.043 kb on - strand, within ABCV34_RS02900 at 646.043 kb on - strand, within ABCV34_RS02900 at 646.043 kb on - strand, within ABCV34_RS02900 at 646.336 kb on + strand, within ABCV34_RS02900 at 646.521 kb on + strand, within ABCV34_RS02900 at 646.522 kb on - strand, within ABCV34_RS02900 at 646.774 kb on + strand at 646.774 kb on + strand at 646.774 kb on + strand at 646.775 kb on - strand at 647.248 kb on - strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.274 kb on + strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.275 kb on - strand, within ABCV34_RS02905 at 647.364 kb on + strand, within ABCV34_RS02905 at 647.546 kb on + strand, within ABCV34_RS02905 at 647.546 kb on + strand, within ABCV34_RS02905 at 647.546 kb on + strand, within ABCV34_RS02905 at 647.546 kb on + strand, within ABCV34_RS02905 at 647.547 kb on - strand, within ABCV34_RS02905 at 647.547 kb on - strand, within ABCV34_RS02905 at 647.835 kb on + strand, within ABCV34_RS02905 at 647.835 kb on + strand, within ABCV34_RS02905 at 647.835 kb on + strand, within ABCV34_RS02905 at 647.835 kb on + strand, within ABCV34_RS02905 at 647.835 kb on + strand, within ABCV34_RS02905 at 647.836 kb on - strand, within ABCV34_RS02905 at 647.836 kb on - strand, within ABCV34_RS02905 at 647.836 kb on - strand, within ABCV34_RS02905 at 647.836 kb on - strand, within ABCV34_RS02905 at 647.913 kb on + strand, within ABCV34_RS02905 at 647.914 kb on - strand, within ABCV34_RS02905 at 647.914 kb on - strand, within ABCV34_RS02905 at 647.914 kb on - strand, within ABCV34_RS02905 at 647.914 kb on - strand, within ABCV34_RS02905 at 648.069 kb on + strand at 648.069 kb on + strand at 648.069 kb on + strand at 648.069 kb on + strand at 648.069 kb on + strand at 648.069 kb on + strand at 648.070 kb on - strand at 648.070 kb on - strand at 648.070 kb on - strand at 648.143 kb on + strand at 648.143 kb on + strand at 648.143 kb on + strand at 648.143 kb on + strand at 648.143 kb on + strand at 648.143 kb on + strand at 648.143 kb on + strand at 648.144 kb on - strand at 648.144 kb on - strand at 648.144 kb on - strand at 648.144 kb on - strand at 648.144 kb on - strand at 648.208 kb on + strand at 648.208 kb on + strand at 648.208 kb on + strand at 648.208 kb on + strand at 648.209 kb on - strand at 648.209 kb on - strand at 648.209 kb on - strand at 648.209 kb on - strand at 648.209 kb on - strand at 648.209 kb on - strand at 648.209 kb on - strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.253 kb on + strand at 648.254 kb on - strand at 648.254 kb on - strand at 648.254 kb on - strand at 648.254 kb on - strand at 648.254 kb on - strand at 648.254 kb on - strand at 648.254 kb on - strand at 648.254 kb on - strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.255 kb on + strand at 648.256 kb on - strand at 648.353 kb on + strand at 648.353 kb on + strand at 648.353 kb on + strand at 648.353 kb on + strand at 648.354 kb on - strand at 648.431 kb on + strand at 648.431 kb on + strand at 648.431 kb on + strand at 648.431 kb on + strand at 648.443 kb on + strand at 648.444 kb on - strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.466 kb on + strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.467 kb on - strand at 648.524 kb on + strand, within ABCV34_RS02910 at 648.524 kb on + strand, within ABCV34_RS02910 at 648.524 kb on + strand, within ABCV34_RS02910 at 648.524 kb on + strand, within ABCV34_RS02910 at 648.524 kb on + strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.525 kb on - strand, within ABCV34_RS02910 at 648.642 kb on - strand, within ABCV34_RS02910 at 648.731 kb on + strand, within ABCV34_RS02910 at 648.731 kb on + strand, within ABCV34_RS02910 at 648.731 kb on + strand, within ABCV34_RS02910 at 648.731 kb on + strand, within ABCV34_RS02910 at 648.731 kb on + strand, within ABCV34_RS02910 at 648.732 kb on - strand, within ABCV34_RS02910 at 648.732 kb on - strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.845 kb on + strand, within ABCV34_RS02910 at 648.846 kb on - strand, within ABCV34_RS02910 at 648.846 kb on - strand, within ABCV34_RS02910 at 648.846 kb on - strand, within ABCV34_RS02910 at 648.846 kb on - strand, within ABCV34_RS02910 at 648.846 kb on - strand, within ABCV34_RS02910 at 648.846 kb on - strand, within ABCV34_RS02910 at 649.103 kb on + strand, within ABCV34_RS02910 at 649.103 kb on + strand, within ABCV34_RS02910 at 649.103 kb on + strand, within ABCV34_RS02910 at 649.104 kb on - strand, within ABCV34_RS02910 at 649.124 kb on + strand, within ABCV34_RS02910 at 649.124 kb on + strand, within ABCV34_RS02910 at 649.124 kb on + strand, within ABCV34_RS02910 at 649.124 kb on + strand, within ABCV34_RS02910 at 649.124 kb on + strand, within ABCV34_RS02910 at 649.124 kb on + strand, within ABCV34_RS02910 at 649.125 kb on - strand, within ABCV34_RS02910 at 649.125 kb on - strand, within ABCV34_RS02910 at 649.125 kb on - strand, within ABCV34_RS02910 at 649.125 kb on - strand, within ABCV34_RS02910 at 649.125 kb on - strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.127 kb on + strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910 at 649.128 kb on - strand, within ABCV34_RS02910
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 645,943 + ABCV34_RS02900 0.23 -2.9 645,943 + ABCV34_RS02900 0.23 -1.2 645,943 + ABCV34_RS02900 0.23 -2.0 645,944 - ABCV34_RS02900 0.23 +0.1 645,944 - ABCV34_RS02900 0.23 -0.6 645,944 - ABCV34_RS02900 0.23 -0.2 645,944 - ABCV34_RS02900 0.23 -2.2 645,973 + ABCV34_RS02900 0.25 -0.7 645,973 + ABCV34_RS02900 0.25 -1.5 645,973 + ABCV34_RS02900 0.25 -1.2 645,974 - ABCV34_RS02900 0.25 -1.2 645,974 - ABCV34_RS02900 0.25 +0.2 645,974 - ABCV34_RS02900 0.25 +0.5 645,974 - ABCV34_RS02900 0.25 -1.1 645,974 - ABCV34_RS02900 0.25 -1.4 645,974 - ABCV34_RS02900 0.25 +0.2 645,974 - ABCV34_RS02900 0.25 -0.7 645,974 - ABCV34_RS02900 0.25 -3.5 646,042 + ABCV34_RS02900 0.31 -0.8 646,042 + ABCV34_RS02900 0.31 -1.4 646,043 - ABCV34_RS02900 0.31 -1.0 646,043 - ABCV34_RS02900 0.31 -0.0 646,043 - ABCV34_RS02900 0.31 -1.2 646,043 - ABCV34_RS02900 0.31 -0.8 646,043 - ABCV34_RS02900 0.31 +0.0 646,336 + ABCV34_RS02900 0.56 -0.3 646,521 + ABCV34_RS02900 0.71 -0.1 646,522 - ABCV34_RS02900 0.71 -1.5 646,774 + -0.7 646,774 + -2.9 646,774 + +2.5 646,775 - -0.0 647,248 - ABCV34_RS02905 0.30 -3.4 647,274 + ABCV34_RS02905 0.32 -0.6 647,274 + ABCV34_RS02905 0.32 -0.4 647,274 + ABCV34_RS02905 0.32 -0.2 647,274 + ABCV34_RS02905 0.32 -3.0 647,274 + ABCV34_RS02905 0.32 +1.4 647,274 + ABCV34_RS02905 0.32 -2.3 647,274 + ABCV34_RS02905 0.32 +1.8 647,274 + ABCV34_RS02905 0.32 -1.2 647,274 + ABCV34_RS02905 0.32 -1.9 647,275 - ABCV34_RS02905 0.32 -1.8 647,275 - ABCV34_RS02905 0.32 -0.2 647,275 - ABCV34_RS02905 0.32 -1.8 647,275 - ABCV34_RS02905 0.32 -1.9 647,275 - ABCV34_RS02905 0.32 -2.2 647,275 - ABCV34_RS02905 0.32 -1.0 647,275 - ABCV34_RS02905 0.32 -0.3 647,275 - ABCV34_RS02905 0.32 -1.5 647,275 - ABCV34_RS02905 0.32 -0.2 647,275 - ABCV34_RS02905 0.32 +0.7 647,364 + ABCV34_RS02905 0.39 -0.9 647,546 + ABCV34_RS02905 0.54 -2.7 647,546 + ABCV34_RS02905 0.54 +2.3 647,546 + ABCV34_RS02905 0.54 +0.2 647,546 + ABCV34_RS02905 0.54 +0.9 647,547 - ABCV34_RS02905 0.54 -1.7 647,547 - ABCV34_RS02905 0.54 -0.4 647,835 + ABCV34_RS02905 0.76 -0.8 647,835 + ABCV34_RS02905 0.76 +0.8 647,835 + ABCV34_RS02905 0.76 -0.0 647,835 + ABCV34_RS02905 0.76 -0.5 647,835 + ABCV34_RS02905 0.76 -0.7 647,836 - ABCV34_RS02905 0.76 +0.4 647,836 - ABCV34_RS02905 0.76 +0.1 647,836 - ABCV34_RS02905 0.76 +1.1 647,836 - ABCV34_RS02905 0.76 +0.3 647,913 + ABCV34_RS02905 0.82 -0.4 647,914 - ABCV34_RS02905 0.82 -0.6 647,914 - ABCV34_RS02905 0.82 -0.9 647,914 - ABCV34_RS02905 0.82 -2.4 647,914 - ABCV34_RS02905 0.82 -2.1 648,069 + +1.9 648,069 + +0.1 648,069 + +0.6 648,069 + -4.3 648,069 + -0.6 648,069 + -0.2 648,070 - -1.9 648,070 - -0.6 648,070 - -2.4 648,143 + -0.3 648,143 + -2.1 648,143 + -0.5 648,143 + -0.6 648,143 + -1.6 648,143 + -1.3 648,143 + -3.3 648,144 - -0.4 648,144 - -1.2 648,144 - -2.7 648,144 - -1.5 648,144 - -1.7 648,208 + -0.8 648,208 + -2.7 648,208 + -0.7 648,208 + -1.8 648,209 - +0.6 648,209 - +1.8 648,209 - -1.2 648,209 - +0.3 648,209 - -1.2 648,209 - -2.7 648,209 - +0.1 648,253 + -1.2 648,253 + +0.5 648,253 + -0.2 648,253 + -1.1 648,253 + -0.2 648,253 + -0.8 648,253 + -2.5 648,253 + +1.1 648,253 + -1.5 648,253 + -1.0 648,254 - -0.7 648,254 - -0.8 648,254 - -2.7 648,254 - -2.3 648,254 - +1.1 648,254 - +0.3 648,254 - +1.3 648,254 - -0.7 648,255 + +0.0 648,255 + -1.1 648,255 + +0.0 648,255 + -0.5 648,255 + -2.0 648,255 + -1.9 648,255 + -0.7 648,255 + -1.4 648,255 + -1.0 648,255 + -1.2 648,256 - -3.1 648,353 + -1.0 648,353 + +0.2 648,353 + -1.1 648,353 + +0.3 648,354 - -2.1 648,431 + +0.5 648,431 + -1.2 648,431 + -0.8 648,431 + -2.1 648,443 + -2.0 648,444 - -1.2 648,466 + -1.2 648,466 + +0.5 648,466 + +1.1 648,466 + -3.4 648,466 + -1.5 648,466 + +0.1 648,466 + +0.0 648,466 + -0.5 648,466 + -1.8 648,466 + +0.1 648,466 + +0.2 648,466 + -1.1 648,466 + -2.9 648,466 + -0.0 648,466 + -2.8 648,466 + +0.7 648,466 + +0.8 648,466 + -0.0 648,467 - -0.2 648,467 - -1.1 648,467 - -2.8 648,467 - -2.8 648,467 - +0.1 648,467 - -1.8 648,467 - -2.1 648,467 - -2.0 648,467 - -1.0 648,467 - +0.8 648,467 - -1.5 648,524 + ABCV34_RS02910 0.12 -0.9 648,524 + ABCV34_RS02910 0.12 -4.1 648,524 + ABCV34_RS02910 0.12 -0.4 648,524 + ABCV34_RS02910 0.12 -0.1 648,524 + ABCV34_RS02910 0.12 -1.3 648,525 - ABCV34_RS02910 0.12 +0.2 648,525 - ABCV34_RS02910 0.12 -0.3 648,525 - ABCV34_RS02910 0.12 -2.6 648,525 - ABCV34_RS02910 0.12 +0.5 648,525 - ABCV34_RS02910 0.12 -1.5 648,525 - ABCV34_RS02910 0.12 -2.3 648,525 - ABCV34_RS02910 0.12 -0.4 648,525 - ABCV34_RS02910 0.12 -1.8 648,642 - ABCV34_RS02910 0.23 -2.5 648,731 + ABCV34_RS02910 0.31 -3.9 648,731 + ABCV34_RS02910 0.31 +2.1 648,731 + ABCV34_RS02910 0.31 -0.8 648,731 + ABCV34_RS02910 0.31 -2.1 648,731 + ABCV34_RS02910 0.31 -1.4 648,732 - ABCV34_RS02910 0.31 +1.9 648,732 - ABCV34_RS02910 0.31 -1.7 648,845 + ABCV34_RS02910 0.41 -1.5 648,845 + ABCV34_RS02910 0.41 +0.1 648,845 + ABCV34_RS02910 0.41 -0.2 648,845 + ABCV34_RS02910 0.41 -1.1 648,845 + ABCV34_RS02910 0.41 -1.2 648,845 + ABCV34_RS02910 0.41 -1.7 648,845 + ABCV34_RS02910 0.41 -0.2 648,845 + ABCV34_RS02910 0.41 -0.8 648,845 + ABCV34_RS02910 0.41 +0.7 648,845 + ABCV34_RS02910 0.41 -1.4 648,845 + ABCV34_RS02910 0.41 -2.2 648,845 + ABCV34_RS02910 0.41 -1.4 648,846 - ABCV34_RS02910 0.41 +2.2 648,846 - ABCV34_RS02910 0.41 +0.3 648,846 - ABCV34_RS02910 0.41 -0.9 648,846 - ABCV34_RS02910 0.41 -1.2 648,846 - ABCV34_RS02910 0.41 -1.1 648,846 - ABCV34_RS02910 0.41 -0.3 649,103 + ABCV34_RS02910 0.64 -3.1 649,103 + ABCV34_RS02910 0.64 -0.1 649,103 + ABCV34_RS02910 0.64 -3.5 649,104 - ABCV34_RS02910 0.64 +3.4 649,124 + ABCV34_RS02910 0.65 +0.3 649,124 + ABCV34_RS02910 0.65 -3.2 649,124 + ABCV34_RS02910 0.65 -0.8 649,124 + ABCV34_RS02910 0.65 -0.6 649,124 + ABCV34_RS02910 0.65 -1.5 649,124 + ABCV34_RS02910 0.65 +0.9 649,125 - ABCV34_RS02910 0.66 -0.3 649,125 - ABCV34_RS02910 0.66 -1.1 649,125 - ABCV34_RS02910 0.66 -0.2 649,125 - ABCV34_RS02910 0.66 -0.2 649,125 - ABCV34_RS02910 0.66 -2.9 649,127 + ABCV34_RS02910 0.66 -1.4 649,127 + ABCV34_RS02910 0.66 +0.4 649,127 + ABCV34_RS02910 0.66 -0.9 649,127 + ABCV34_RS02910 0.66 -0.3 649,127 + ABCV34_RS02910 0.66 -1.4 649,127 + ABCV34_RS02910 0.66 -1.2 649,127 + ABCV34_RS02910 0.66 -0.9 649,127 + ABCV34_RS02910 0.66 -2.0 649,127 + ABCV34_RS02910 0.66 -0.6 649,127 + ABCV34_RS02910 0.66 -1.2 649,128 - ABCV34_RS02910 0.66 -0.2 649,128 - ABCV34_RS02910 0.66 -1.3 649,128 - ABCV34_RS02910 0.66 -0.2 649,128 - ABCV34_RS02910 0.66 -0.9 649,128 - ABCV34_RS02910 0.66 +2.1 649,128 - ABCV34_RS02910 0.66 +0.7 649,128 - ABCV34_RS02910 0.66 -1.1 649,128 - ABCV34_RS02910 0.66 -2.6 649,128 - ABCV34_RS02910 0.66 -0.2 649,128 - ABCV34_RS02910 0.66 -1.5 649,128 - ABCV34_RS02910 0.66 -0.1
Or see this region's nucleotide sequence