Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02840 and ABCV34_RS02845 overlap by 4 nucleotides ABCV34_RS02845 and ABCV34_RS02850 overlap by 8 nucleotides ABCV34_RS02850 and ABCV34_RS02855 are separated by 138 nucleotides
ABCV34_RS02840: ABCV34_RS02840 - branched-chain amino acid ABC transporter permease, at 632,651 to 633,691
_RS02840
ABCV34_RS02845: ABCV34_RS02845 - ABC transporter ATP-binding protein, at 633,688 to 634,437
_RS02845
ABCV34_RS02850: ABCV34_RS02850 - ABC transporter ATP-binding protein, at 634,430 to 635,095
_RS02850
ABCV34_RS02855: ABCV34_RS02855 - hemerythrin domain-containing protein, at 635,234 to 635,755
_RS02855
Position (kb) 633
634
635 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 632.747 kb on + strand at 632.747 kb on + strand at 632.747 kb on + strand at 632.747 kb on + strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.748 kb on - strand at 632.777 kb on + strand, within ABCV34_RS02840 at 632.777 kb on + strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.778 kb on - strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.798 kb on + strand, within ABCV34_RS02840 at 632.799 kb on - strand, within ABCV34_RS02840 at 632.799 kb on - strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.915 kb on + strand, within ABCV34_RS02840 at 632.916 kb on - strand, within ABCV34_RS02840 at 632.916 kb on - strand, within ABCV34_RS02840 at 632.918 kb on - strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.080 kb on + strand, within ABCV34_RS02840 at 633.200 kb on + strand, within ABCV34_RS02840 at 633.200 kb on + strand, within ABCV34_RS02840 at 633.200 kb on + strand, within ABCV34_RS02840 at 633.201 kb on - strand, within ABCV34_RS02840 at 633.201 kb on - strand, within ABCV34_RS02840 at 633.251 kb on + strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.252 kb on - strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.286 kb on + strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.287 kb on - strand, within ABCV34_RS02840 at 633.347 kb on + strand, within ABCV34_RS02840 at 633.347 kb on + strand, within ABCV34_RS02840 at 633.347 kb on + strand, within ABCV34_RS02840 at 633.348 kb on - strand, within ABCV34_RS02840 at 633.348 kb on - strand, within ABCV34_RS02840 at 633.365 kb on + strand, within ABCV34_RS02840 at 633.488 kb on + strand, within ABCV34_RS02840 at 633.488 kb on + strand, within ABCV34_RS02840 at 633.488 kb on + strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.489 kb on - strand, within ABCV34_RS02840 at 633.530 kb on + strand, within ABCV34_RS02840 at 633.530 kb on + strand, within ABCV34_RS02840 at 633.531 kb on - strand, within ABCV34_RS02840 at 633.531 kb on - strand, within ABCV34_RS02840 at 633.558 kb on - strand, within ABCV34_RS02840 at 633.936 kb on + strand, within ABCV34_RS02845 at 633.936 kb on + strand, within ABCV34_RS02845 at 633.936 kb on + strand, within ABCV34_RS02845 at 633.936 kb on + strand, within ABCV34_RS02845 at 634.135 kb on + strand, within ABCV34_RS02845 at 634.332 kb on + strand, within ABCV34_RS02845 at 634.333 kb on - strand, within ABCV34_RS02845 at 634.333 kb on - strand, within ABCV34_RS02845 at 634.414 kb on + strand at 634.414 kb on + strand at 634.414 kb on + strand at 634.415 kb on - strand at 634.573 kb on + strand, within ABCV34_RS02850 at 634.574 kb on - strand, within ABCV34_RS02850 at 634.574 kb on - strand, within ABCV34_RS02850 at 634.574 kb on - strand, within ABCV34_RS02850 at 634.696 kb on + strand, within ABCV34_RS02850 at 634.696 kb on + strand, within ABCV34_RS02850 at 634.772 kb on + strand, within ABCV34_RS02850 at 635.063 kb on + strand at 635.064 kb on - strand at 635.074 kb on + strand at 635.309 kb on + strand, within ABCV34_RS02855 at 635.309 kb on + strand, within ABCV34_RS02855 at 635.309 kb on + strand, within ABCV34_RS02855 at 635.309 kb on + strand, within ABCV34_RS02855 at 635.309 kb on + strand, within ABCV34_RS02855 at 635.310 kb on - strand, within ABCV34_RS02855 at 635.310 kb on - strand, within ABCV34_RS02855 at 635.310 kb on - strand, within ABCV34_RS02855 at 635.310 kb on - strand, within ABCV34_RS02855 at 635.310 kb on - strand, within ABCV34_RS02855 at 635.310 kb on - strand, within ABCV34_RS02855
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 632,747 + -1.6 632,747 + -3.0 632,747 + +1.0 632,747 + +0.1 632,748 - -1.9 632,748 - -0.9 632,748 - -2.3 632,748 - -2.9 632,748 - -0.9 632,748 - +0.7 632,748 - -2.4 632,748 - +0.1 632,777 + ABCV34_RS02840 0.12 +1.8 632,777 + ABCV34_RS02840 0.12 +0.5 632,778 - ABCV34_RS02840 0.12 -3.3 632,778 - ABCV34_RS02840 0.12 -1.2 632,778 - ABCV34_RS02840 0.12 -1.5 632,778 - ABCV34_RS02840 0.12 -0.9 632,798 + ABCV34_RS02840 0.14 +1.8 632,798 + ABCV34_RS02840 0.14 -2.1 632,798 + ABCV34_RS02840 0.14 -1.3 632,798 + ABCV34_RS02840 0.14 -0.7 632,798 + ABCV34_RS02840 0.14 -1.4 632,799 - ABCV34_RS02840 0.14 -0.9 632,799 - ABCV34_RS02840 0.14 +3.1 632,915 + ABCV34_RS02840 0.25 -1.9 632,915 + ABCV34_RS02840 0.25 -1.9 632,915 + ABCV34_RS02840 0.25 -2.0 632,915 + ABCV34_RS02840 0.25 +1.1 632,915 + ABCV34_RS02840 0.25 -2.1 632,915 + ABCV34_RS02840 0.25 -1.4 632,915 + ABCV34_RS02840 0.25 -0.1 632,916 - ABCV34_RS02840 0.25 -2.9 632,916 - ABCV34_RS02840 0.25 -0.0 632,918 - ABCV34_RS02840 0.26 +0.8 633,080 + ABCV34_RS02840 0.41 -1.8 633,080 + ABCV34_RS02840 0.41 -1.6 633,080 + ABCV34_RS02840 0.41 -0.1 633,080 + ABCV34_RS02840 0.41 +0.7 633,200 + ABCV34_RS02840 0.53 -0.2 633,200 + ABCV34_RS02840 0.53 +1.4 633,200 + ABCV34_RS02840 0.53 -2.4 633,201 - ABCV34_RS02840 0.53 +0.9 633,201 - ABCV34_RS02840 0.53 -0.9 633,251 + ABCV34_RS02840 0.58 -1.9 633,252 - ABCV34_RS02840 0.58 +1.1 633,252 - ABCV34_RS02840 0.58 +0.5 633,252 - ABCV34_RS02840 0.58 -1.7 633,252 - ABCV34_RS02840 0.58 -1.7 633,252 - ABCV34_RS02840 0.58 -1.1 633,252 - ABCV34_RS02840 0.58 -0.8 633,252 - ABCV34_RS02840 0.58 -1.2 633,286 + ABCV34_RS02840 0.61 -0.7 633,286 + ABCV34_RS02840 0.61 -0.0 633,286 + ABCV34_RS02840 0.61 -1.6 633,286 + ABCV34_RS02840 0.61 -2.1 633,286 + ABCV34_RS02840 0.61 +0.9 633,286 + ABCV34_RS02840 0.61 -2.1 633,286 + ABCV34_RS02840 0.61 -2.0 633,286 + ABCV34_RS02840 0.61 +0.5 633,287 - ABCV34_RS02840 0.61 -2.0 633,287 - ABCV34_RS02840 0.61 -1.6 633,287 - ABCV34_RS02840 0.61 -1.2 633,287 - ABCV34_RS02840 0.61 -1.9 633,347 + ABCV34_RS02840 0.67 +0.3 633,347 + ABCV34_RS02840 0.67 +2.5 633,347 + ABCV34_RS02840 0.67 +0.0 633,348 - ABCV34_RS02840 0.67 -2.5 633,348 - ABCV34_RS02840 0.67 -2.8 633,365 + ABCV34_RS02840 0.69 -1.1 633,488 + ABCV34_RS02840 0.80 +1.3 633,488 + ABCV34_RS02840 0.80 -0.2 633,488 + ABCV34_RS02840 0.80 -2.2 633,489 - ABCV34_RS02840 0.80 -3.7 633,489 - ABCV34_RS02840 0.80 -2.8 633,489 - ABCV34_RS02840 0.80 -0.5 633,489 - ABCV34_RS02840 0.80 -0.1 633,530 + ABCV34_RS02840 0.84 +0.7 633,530 + ABCV34_RS02840 0.84 -3.1 633,531 - ABCV34_RS02840 0.85 -1.4 633,531 - ABCV34_RS02840 0.85 -0.8 633,558 - ABCV34_RS02840 0.87 -2.4 633,936 + ABCV34_RS02845 0.33 +1.7 633,936 + ABCV34_RS02845 0.33 -1.8 633,936 + ABCV34_RS02845 0.33 -2.1 633,936 + ABCV34_RS02845 0.33 +0.1 634,135 + ABCV34_RS02845 0.60 +1.6 634,332 + ABCV34_RS02845 0.86 -1.5 634,333 - ABCV34_RS02845 0.86 +1.3 634,333 - ABCV34_RS02845 0.86 -1.8 634,414 + -1.5 634,414 + +0.1 634,414 + -1.2 634,415 - -1.4 634,573 + ABCV34_RS02850 0.21 +1.1 634,574 - ABCV34_RS02850 0.22 -1.7 634,574 - ABCV34_RS02850 0.22 -2.3 634,574 - ABCV34_RS02850 0.22 -2.0 634,696 + ABCV34_RS02850 0.40 -0.5 634,696 + ABCV34_RS02850 0.40 -1.0 634,772 + ABCV34_RS02850 0.51 +0.9 635,063 + -0.7 635,064 - -0.5 635,074 + -2.2 635,309 + ABCV34_RS02855 0.14 -0.2 635,309 + ABCV34_RS02855 0.14 -2.2 635,309 + ABCV34_RS02855 0.14 -0.0 635,309 + ABCV34_RS02855 0.14 -0.0 635,309 + ABCV34_RS02855 0.14 +0.3 635,310 - ABCV34_RS02855 0.15 -1.1 635,310 - ABCV34_RS02855 0.15 -2.2 635,310 - ABCV34_RS02855 0.15 -1.4 635,310 - ABCV34_RS02855 0.15 +1.2 635,310 - ABCV34_RS02855 0.15 -1.2 635,310 - ABCV34_RS02855 0.15 -1.3
Or see this region's nucleotide sequence