Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02695 and ABCV34_RS02700 are separated by 123 nucleotides ABCV34_RS02700 and ABCV34_RS02705 are separated by 303 nucleotides
ABCV34_RS02695: ABCV34_RS02695 - RNA polymerase sigma factor RpoD, at 599,673 to 601,853
_RS02695
ABCV34_RS02700: ABCV34_RS02700 - sigma-54-dependent Fis family transcriptional regulator, at 601,977 to 603,806
_RS02700
ABCV34_RS02705: ABCV34_RS02705 - aldehyde dehydrogenase family protein, at 604,110 to 605,636
_RS02705
Position (kb) 601
602
603
604 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 601.912 kb on + strand at 601.912 kb on + strand at 601.912 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.003 kb on + strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.004 kb on - strand at 602.281 kb on + strand, within ABCV34_RS02700 at 602.282 kb on - strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.297 kb on + strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.298 kb on - strand, within ABCV34_RS02700 at 602.432 kb on - strand, within ABCV34_RS02700 at 602.432 kb on - strand, within ABCV34_RS02700 at 602.434 kb on + strand, within ABCV34_RS02700 at 602.434 kb on + strand, within ABCV34_RS02700 at 602.434 kb on + strand, within ABCV34_RS02700 at 602.435 kb on - strand, within ABCV34_RS02700 at 602.435 kb on - strand, within ABCV34_RS02700 at 602.435 kb on - strand, within ABCV34_RS02700 at 602.435 kb on - strand, within ABCV34_RS02700 at 602.435 kb on - strand, within ABCV34_RS02700 at 602.789 kb on + strand, within ABCV34_RS02700 at 602.789 kb on + strand, within ABCV34_RS02700 at 602.789 kb on + strand, within ABCV34_RS02700 at 602.789 kb on + strand, within ABCV34_RS02700 at 602.789 kb on + strand, within ABCV34_RS02700 at 602.789 kb on + strand, within ABCV34_RS02700 at 602.790 kb on - strand, within ABCV34_RS02700 at 603.054 kb on + strand, within ABCV34_RS02700 at 603.054 kb on + strand, within ABCV34_RS02700 at 603.055 kb on - strand, within ABCV34_RS02700 at 603.055 kb on - strand, within ABCV34_RS02700 at 603.055 kb on - strand, within ABCV34_RS02700 at 603.341 kb on + strand, within ABCV34_RS02700 at 603.527 kb on + strand, within ABCV34_RS02700 at 603.527 kb on + strand, within ABCV34_RS02700 at 603.527 kb on + strand, within ABCV34_RS02700 at 603.527 kb on + strand, within ABCV34_RS02700 at 603.528 kb on - strand, within ABCV34_RS02700 at 603.528 kb on - strand, within ABCV34_RS02700 at 603.528 kb on - strand, within ABCV34_RS02700 at 603.528 kb on - strand, within ABCV34_RS02700 at 603.528 kb on - strand, within ABCV34_RS02700 at 603.538 kb on + strand, within ABCV34_RS02700 at 603.538 kb on + strand, within ABCV34_RS02700 at 603.539 kb on - strand, within ABCV34_RS02700 at 603.929 kb on + strand at 603.929 kb on + strand at 603.930 kb on - strand at 603.930 kb on - strand at 603.930 kb on - strand at 603.930 kb on - strand at 603.930 kb on - strand at 603.972 kb on - strand at 603.972 kb on - strand at 603.987 kb on + strand at 603.988 kb on - strand at 604.007 kb on + strand at 604.007 kb on + strand at 604.007 kb on + strand at 604.008 kb on - strand at 604.008 kb on - strand at 604.115 kb on + strand at 604.115 kb on + strand at 604.115 kb on + strand at 604.115 kb on + strand at 604.116 kb on - strand at 604.158 kb on + strand at 604.158 kb on + strand at 604.179 kb on + strand at 604.180 kb on - strand at 604.180 kb on - strand at 604.218 kb on + strand at 604.218 kb on + strand at 604.218 kb on + strand at 604.218 kb on + strand at 604.218 kb on + strand at 604.218 kb on + strand at 604.218 kb on + strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.219 kb on - strand at 604.424 kb on + strand, within ABCV34_RS02705 at 604.424 kb on + strand, within ABCV34_RS02705 at 604.425 kb on - strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.489 kb on + strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.490 kb on - strand, within ABCV34_RS02705 at 604.494 kb on + strand, within ABCV34_RS02705 at 604.494 kb on + strand, within ABCV34_RS02705 at 604.495 kb on - strand, within ABCV34_RS02705 at 604.495 kb on - strand, within ABCV34_RS02705 at 604.560 kb on + strand, within ABCV34_RS02705 at 604.672 kb on + strand, within ABCV34_RS02705 at 604.672 kb on + strand, within ABCV34_RS02705 at 604.673 kb on - strand, within ABCV34_RS02705
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 601,912 + +1.1 601,912 + +0.4 601,912 + +2.2 602,003 + -0.7 602,003 + +1.2 602,003 + -0.6 602,003 + -0.5 602,003 + -1.2 602,003 + -1.9 602,003 + -2.3 602,003 + -1.1 602,003 + -0.0 602,004 - +0.5 602,004 - -0.7 602,004 - -3.3 602,004 - +1.1 602,004 - -0.2 602,004 - -0.5 602,004 - -0.8 602,004 - -0.8 602,004 - +0.2 602,004 - -1.2 602,281 + ABCV34_RS02700 0.17 -2.1 602,282 - ABCV34_RS02700 0.17 +2.4 602,297 + ABCV34_RS02700 0.17 -0.4 602,297 + ABCV34_RS02700 0.17 -1.9 602,297 + ABCV34_RS02700 0.17 -0.6 602,297 + ABCV34_RS02700 0.17 -0.9 602,297 + ABCV34_RS02700 0.17 +1.1 602,297 + ABCV34_RS02700 0.17 +0.7 602,297 + ABCV34_RS02700 0.17 +2.5 602,297 + ABCV34_RS02700 0.17 -3.4 602,297 + ABCV34_RS02700 0.17 -1.3 602,297 + ABCV34_RS02700 0.17 -1.7 602,297 + ABCV34_RS02700 0.17 -1.8 602,297 + ABCV34_RS02700 0.17 -1.4 602,297 + ABCV34_RS02700 0.17 -2.1 602,297 + ABCV34_RS02700 0.17 -2.8 602,297 + ABCV34_RS02700 0.17 -0.9 602,298 - ABCV34_RS02700 0.18 -0.3 602,298 - ABCV34_RS02700 0.18 +0.4 602,298 - ABCV34_RS02700 0.18 +1.3 602,298 - ABCV34_RS02700 0.18 -0.5 602,298 - ABCV34_RS02700 0.18 +1.2 602,298 - ABCV34_RS02700 0.18 +0.2 602,298 - ABCV34_RS02700 0.18 +0.6 602,298 - ABCV34_RS02700 0.18 -1.5 602,298 - ABCV34_RS02700 0.18 +0.5 602,298 - ABCV34_RS02700 0.18 +0.0 602,298 - ABCV34_RS02700 0.18 +1.2 602,298 - ABCV34_RS02700 0.18 -1.2 602,298 - ABCV34_RS02700 0.18 -1.8 602,298 - ABCV34_RS02700 0.18 +0.3 602,298 - ABCV34_RS02700 0.18 -2.7 602,298 - ABCV34_RS02700 0.18 -0.2 602,298 - ABCV34_RS02700 0.18 -2.4 602,298 - ABCV34_RS02700 0.18 -2.0 602,432 - ABCV34_RS02700 0.25 +1.3 602,432 - ABCV34_RS02700 0.25 -1.7 602,434 + ABCV34_RS02700 0.25 +0.6 602,434 + ABCV34_RS02700 0.25 -0.1 602,434 + ABCV34_RS02700 0.25 -2.0 602,435 - ABCV34_RS02700 0.25 -2.8 602,435 - ABCV34_RS02700 0.25 -0.2 602,435 - ABCV34_RS02700 0.25 -0.3 602,435 - ABCV34_RS02700 0.25 -0.6 602,435 - ABCV34_RS02700 0.25 -0.5 602,789 + ABCV34_RS02700 0.44 -0.7 602,789 + ABCV34_RS02700 0.44 -0.7 602,789 + ABCV34_RS02700 0.44 +0.9 602,789 + ABCV34_RS02700 0.44 +1.5 602,789 + ABCV34_RS02700 0.44 -0.7 602,789 + ABCV34_RS02700 0.44 +0.1 602,790 - ABCV34_RS02700 0.44 -1.2 603,054 + ABCV34_RS02700 0.59 -0.9 603,054 + ABCV34_RS02700 0.59 -2.8 603,055 - ABCV34_RS02700 0.59 +0.1 603,055 - ABCV34_RS02700 0.59 -2.0 603,055 - ABCV34_RS02700 0.59 -0.3 603,341 + ABCV34_RS02700 0.75 -2.9 603,527 + ABCV34_RS02700 0.85 +1.6 603,527 + ABCV34_RS02700 0.85 +0.8 603,527 + ABCV34_RS02700 0.85 -1.5 603,527 + ABCV34_RS02700 0.85 -2.6 603,528 - ABCV34_RS02700 0.85 -0.9 603,528 - ABCV34_RS02700 0.85 -1.9 603,528 - ABCV34_RS02700 0.85 -1.7 603,528 - ABCV34_RS02700 0.85 +2.3 603,528 - ABCV34_RS02700 0.85 +1.1 603,538 + ABCV34_RS02700 0.85 -0.0 603,538 + ABCV34_RS02700 0.85 -0.3 603,539 - ABCV34_RS02700 0.85 -3.9 603,929 + -2.1 603,929 + -0.3 603,930 - +0.8 603,930 - -0.3 603,930 - -0.2 603,930 - +0.7 603,930 - -2.4 603,972 - -0.1 603,972 - -2.8 603,987 + -1.4 603,988 - -2.6 604,007 + -0.8 604,007 + -0.4 604,007 + -0.8 604,008 - -2.9 604,008 - -1.7 604,115 + -1.6 604,115 + -0.3 604,115 + +0.0 604,115 + +0.8 604,116 - -0.2 604,158 + -1.8 604,158 + -0.0 604,179 + -1.2 604,180 - -0.8 604,180 - +1.6 604,218 + -1.2 604,218 + +2.1 604,218 + -2.8 604,218 + -0.5 604,218 + +1.8 604,218 + -0.2 604,218 + +0.9 604,219 - +0.5 604,219 - +1.3 604,219 - -2.2 604,219 - -0.4 604,219 - -0.6 604,219 - +1.0 604,219 - -1.7 604,219 - -0.8 604,219 - +1.1 604,424 + ABCV34_RS02705 0.21 -1.1 604,424 + ABCV34_RS02705 0.21 -1.4 604,425 - ABCV34_RS02705 0.21 -1.9 604,489 + ABCV34_RS02705 0.25 -2.4 604,489 + ABCV34_RS02705 0.25 -2.4 604,489 + ABCV34_RS02705 0.25 -2.4 604,489 + ABCV34_RS02705 0.25 -1.2 604,489 + ABCV34_RS02705 0.25 -0.5 604,489 + ABCV34_RS02705 0.25 -0.8 604,489 + ABCV34_RS02705 0.25 -3.3 604,489 + ABCV34_RS02705 0.25 +0.5 604,489 + ABCV34_RS02705 0.25 -1.6 604,489 + ABCV34_RS02705 0.25 -3.2 604,489 + ABCV34_RS02705 0.25 -0.5 604,489 + ABCV34_RS02705 0.25 +0.1 604,489 + ABCV34_RS02705 0.25 -1.2 604,489 + ABCV34_RS02705 0.25 -1.4 604,489 + ABCV34_RS02705 0.25 -1.3 604,489 + ABCV34_RS02705 0.25 +2.1 604,489 + ABCV34_RS02705 0.25 -1.7 604,489 + ABCV34_RS02705 0.25 +0.1 604,489 + ABCV34_RS02705 0.25 +1.7 604,490 - ABCV34_RS02705 0.25 -1.3 604,490 - ABCV34_RS02705 0.25 +1.8 604,490 - ABCV34_RS02705 0.25 +1.5 604,490 - ABCV34_RS02705 0.25 -0.5 604,490 - ABCV34_RS02705 0.25 -0.1 604,490 - ABCV34_RS02705 0.25 -1.3 604,490 - ABCV34_RS02705 0.25 +1.7 604,490 - ABCV34_RS02705 0.25 +1.8 604,490 - ABCV34_RS02705 0.25 -1.6 604,490 - ABCV34_RS02705 0.25 -0.3 604,494 + ABCV34_RS02705 0.25 -2.4 604,494 + ABCV34_RS02705 0.25 -1.9 604,495 - ABCV34_RS02705 0.25 -0.8 604,495 - ABCV34_RS02705 0.25 -3.2 604,560 + ABCV34_RS02705 0.29 -0.1 604,672 + ABCV34_RS02705 0.37 +0.5 604,672 + ABCV34_RS02705 0.37 -2.6 604,673 - ABCV34_RS02705 0.37 -3.0
Or see this region's nucleotide sequence