Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02640 and ABCV34_RS02645 overlap by 4 nucleotides ABCV34_RS02645 and ABCV34_RS02650 are separated by 88 nucleotides ABCV34_RS02650 and ABCV34_RS02655 are separated by 183 nucleotides
ABCV34_RS02640: ABCV34_RS02640 - ribosome biogenesis GTPase Der, at 587,779 to 589,170
_RS02640
ABCV34_RS02645: ABCV34_RS02645 - histidinol-phosphate transaminase, at 589,167 to 590,243
_RS02645
ABCV34_RS02650: ABCV34_RS02650 - RNA chaperone Hfq, at 590,332 to 590,568
_RS02650
ABCV34_RS02655: ABCV34_RS02655 - GTPase HflX, at 590,752 to 591,855
_RS02655
Position (kb) 589
590
591 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 589.148 kb on - strand at 589.210 kb on - strand at 589.256 kb on + strand at 589.257 kb on - strand at 589.344 kb on + strand, within ABCV34_RS02645 at 589.344 kb on + strand, within ABCV34_RS02645 at 589.344 kb on + strand, within ABCV34_RS02645 at 589.344 kb on + strand, within ABCV34_RS02645 at 589.345 kb on - strand, within ABCV34_RS02645 at 589.345 kb on - strand, within ABCV34_RS02645 at 589.442 kb on + strand, within ABCV34_RS02645 at 589.443 kb on - strand, within ABCV34_RS02645 at 589.443 kb on - strand, within ABCV34_RS02645 at 589.443 kb on - strand, within ABCV34_RS02645 at 589.500 kb on + strand, within ABCV34_RS02645 at 589.500 kb on + strand, within ABCV34_RS02645 at 589.500 kb on + strand, within ABCV34_RS02645 at 589.500 kb on + strand, within ABCV34_RS02645 at 589.500 kb on + strand, within ABCV34_RS02645 at 589.501 kb on - strand, within ABCV34_RS02645 at 589.501 kb on - strand, within ABCV34_RS02645 at 589.501 kb on - strand, within ABCV34_RS02645 at 589.501 kb on - strand, within ABCV34_RS02645 at 589.501 kb on - strand, within ABCV34_RS02645 at 589.518 kb on + strand, within ABCV34_RS02645 at 589.518 kb on + strand, within ABCV34_RS02645 at 589.518 kb on + strand, within ABCV34_RS02645 at 589.518 kb on + strand, within ABCV34_RS02645 at 589.519 kb on - strand, within ABCV34_RS02645 at 589.519 kb on - strand, within ABCV34_RS02645 at 589.519 kb on - strand, within ABCV34_RS02645 at 589.519 kb on - strand, within ABCV34_RS02645 at 589.519 kb on - strand, within ABCV34_RS02645 at 589.519 kb on - strand, within ABCV34_RS02645 at 589.590 kb on + strand, within ABCV34_RS02645 at 589.590 kb on + strand, within ABCV34_RS02645 at 589.590 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.731 kb on + strand, within ABCV34_RS02645 at 589.732 kb on - strand, within ABCV34_RS02645 at 589.732 kb on - strand, within ABCV34_RS02645 at 589.732 kb on - strand, within ABCV34_RS02645 at 589.732 kb on - strand, within ABCV34_RS02645 at 589.799 kb on + strand, within ABCV34_RS02645 at 589.800 kb on - strand, within ABCV34_RS02645 at 590.166 kb on + strand at 590.166 kb on + strand at 590.182 kb on + strand at 590.182 kb on + strand at 590.183 kb on - strand at 590.183 kb on - strand at 590.216 kb on + strand at 590.293 kb on + strand at 590.306 kb on + strand at 590.306 kb on + strand at 590.566 kb on + strand at 590.566 kb on + strand at 590.566 kb on + strand at 590.567 kb on - strand at 590.633 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.749 kb on + strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.750 kb on - strand at 590.751 kb on + strand at 590.751 kb on + strand at 590.751 kb on + strand at 590.751 kb on + strand at 590.751 kb on + strand at 590.751 kb on + strand at 590.752 kb on - strand at 590.752 kb on - strand at 590.752 kb on - strand at 590.752 kb on - strand at 590.752 kb on - strand at 590.752 kb on - strand at 590.795 kb on - strand at 590.795 kb on - strand at 590.997 kb on + strand, within ABCV34_RS02655 at 590.997 kb on + strand, within ABCV34_RS02655 at 590.998 kb on - strand, within ABCV34_RS02655 at 590.998 kb on - strand, within ABCV34_RS02655 at 590.998 kb on - strand, within ABCV34_RS02655 at 591.054 kb on + strand, within ABCV34_RS02655 at 591.054 kb on + strand, within ABCV34_RS02655 at 591.054 kb on + strand, within ABCV34_RS02655 at 591.055 kb on - strand, within ABCV34_RS02655 at 591.055 kb on - strand, within ABCV34_RS02655
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 589,148 - +0.1 589,210 - +0.4 589,256 + +1.4 589,257 - +1.3 589,344 + ABCV34_RS02645 0.16 -1.8 589,344 + ABCV34_RS02645 0.16 +1.0 589,344 + ABCV34_RS02645 0.16 +0.7 589,344 + ABCV34_RS02645 0.16 -0.8 589,345 - ABCV34_RS02645 0.17 -0.3 589,345 - ABCV34_RS02645 0.17 -0.1 589,442 + ABCV34_RS02645 0.26 -0.9 589,443 - ABCV34_RS02645 0.26 -1.1 589,443 - ABCV34_RS02645 0.26 +2.1 589,443 - ABCV34_RS02645 0.26 +1.2 589,500 + ABCV34_RS02645 0.31 +1.7 589,500 + ABCV34_RS02645 0.31 +0.5 589,500 + ABCV34_RS02645 0.31 -0.1 589,500 + ABCV34_RS02645 0.31 +0.5 589,500 + ABCV34_RS02645 0.31 -0.5 589,501 - ABCV34_RS02645 0.31 +0.1 589,501 - ABCV34_RS02645 0.31 -0.2 589,501 - ABCV34_RS02645 0.31 -0.3 589,501 - ABCV34_RS02645 0.31 +0.1 589,501 - ABCV34_RS02645 0.31 +2.1 589,518 + ABCV34_RS02645 0.33 +0.2 589,518 + ABCV34_RS02645 0.33 -1.3 589,518 + ABCV34_RS02645 0.33 -0.1 589,518 + ABCV34_RS02645 0.33 -0.2 589,519 - ABCV34_RS02645 0.33 +0.5 589,519 - ABCV34_RS02645 0.33 +1.2 589,519 - ABCV34_RS02645 0.33 -1.1 589,519 - ABCV34_RS02645 0.33 +1.0 589,519 - ABCV34_RS02645 0.33 -1.5 589,519 - ABCV34_RS02645 0.33 -1.6 589,590 + ABCV34_RS02645 0.39 +1.4 589,590 + ABCV34_RS02645 0.39 -0.9 589,590 + ABCV34_RS02645 0.39 -1.5 589,731 + ABCV34_RS02645 0.52 -0.4 589,731 + ABCV34_RS02645 0.52 -0.3 589,731 + ABCV34_RS02645 0.52 -0.7 589,731 + ABCV34_RS02645 0.52 -2.1 589,731 + ABCV34_RS02645 0.52 -0.7 589,731 + ABCV34_RS02645 0.52 +0.8 589,731 + ABCV34_RS02645 0.52 +0.1 589,731 + ABCV34_RS02645 0.52 -0.1 589,732 - ABCV34_RS02645 0.52 -0.5 589,732 - ABCV34_RS02645 0.52 +0.2 589,732 - ABCV34_RS02645 0.52 +1.7 589,732 - ABCV34_RS02645 0.52 -1.4 589,799 + ABCV34_RS02645 0.59 -0.7 589,800 - ABCV34_RS02645 0.59 -0.7 590,166 + -0.2 590,166 + +0.5 590,182 + -0.7 590,182 + -0.2 590,183 - -0.2 590,183 - -1.1 590,216 + +0.9 590,293 + -1.4 590,306 + -1.1 590,306 + -0.2 590,566 + -1.4 590,566 + -0.6 590,566 + +2.6 590,567 - +0.1 590,633 + -1.2 590,749 + -2.4 590,749 + -1.5 590,749 + -1.6 590,749 + -0.7 590,749 + +1.9 590,749 + -0.7 590,749 + -1.1 590,749 + -2.5 590,749 + +1.3 590,749 + -0.5 590,749 + -2.0 590,749 + -1.4 590,749 + +0.4 590,749 + -2.9 590,750 - -0.4 590,750 - +1.1 590,750 - +0.6 590,750 - -2.1 590,750 - +1.0 590,750 - -1.4 590,750 - -2.9 590,750 - -1.9 590,750 - -1.5 590,750 - -2.0 590,750 - -0.6 590,750 - -1.3 590,750 - -1.2 590,750 - -1.1 590,750 - +1.3 590,750 - -1.5 590,750 - -1.1 590,750 - -0.8 590,750 - +0.6 590,750 - -0.5 590,751 + +1.2 590,751 + +0.6 590,751 + -1.6 590,751 + +1.6 590,751 + -0.3 590,751 + +0.9 590,752 - -0.8 590,752 - -0.9 590,752 - -1.8 590,752 - +0.6 590,752 - -1.4 590,752 - -0.0 590,795 - +0.1 590,795 - -1.8 590,997 + ABCV34_RS02655 0.22 -1.8 590,997 + ABCV34_RS02655 0.22 +2.7 590,998 - ABCV34_RS02655 0.22 +0.3 590,998 - ABCV34_RS02655 0.22 -1.2 590,998 - ABCV34_RS02655 0.22 -1.3 591,054 + ABCV34_RS02655 0.27 +0.2 591,054 + ABCV34_RS02655 0.27 -2.0 591,054 + ABCV34_RS02655 0.27 -0.0 591,055 - ABCV34_RS02655 0.27 -2.3 591,055 - ABCV34_RS02655 0.27 -2.1
Or see this region's nucleotide sequence