Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS02275 and ABCV34_RS02280 are separated by 19 nucleotides ABCV34_RS02280 and ABCV34_RS02285 overlap by 4 nucleotides ABCV34_RS02285 and ABCV34_RS02290 are separated by 161 nucleotides
ABCV34_RS02275: ABCV34_RS02275 - PhoH family protein, at 507,221 to 509,065
_RS02275
ABCV34_RS02280: ABCV34_RS02280 - peroxiredoxin, at 509,085 to 509,555
_RS02280
ABCV34_RS02285: ABCV34_RS02285 - MTH938/NDUFAF3 family protein, at 509,552 to 509,998
_RS02285
ABCV34_RS02290: ABCV34_RS02290 - alanine transaminase, at 510,160 to 511,347
_RS02290
Position (kb) 509
510 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 508.135 kb on - strand, within ABCV34_RS02275 at 508.135 kb on - strand, within ABCV34_RS02275 at 508.135 kb on - strand, within ABCV34_RS02275 at 508.135 kb on - strand, within ABCV34_RS02275 at 508.135 kb on - strand, within ABCV34_RS02275 at 508.135 kb on - strand, within ABCV34_RS02275 at 508.135 kb on - strand, within ABCV34_RS02275 at 508.174 kb on - strand, within ABCV34_RS02275 at 508.174 kb on - strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.379 kb on + strand, within ABCV34_RS02275 at 508.380 kb on - strand, within ABCV34_RS02275 at 508.380 kb on - strand, within ABCV34_RS02275 at 508.380 kb on - strand, within ABCV34_RS02275 at 508.380 kb on - strand, within ABCV34_RS02275 at 508.380 kb on - strand, within ABCV34_RS02275 at 508.598 kb on + strand, within ABCV34_RS02275 at 509.224 kb on + strand, within ABCV34_RS02280 at 509.224 kb on + strand, within ABCV34_RS02280 at 509.224 kb on + strand, within ABCV34_RS02280 at 509.224 kb on + strand, within ABCV34_RS02280 at 509.224 kb on + strand, within ABCV34_RS02280 at 509.224 kb on + strand, within ABCV34_RS02280 at 509.224 kb on + strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.225 kb on - strand, within ABCV34_RS02280 at 509.356 kb on + strand, within ABCV34_RS02280 at 509.356 kb on + strand, within ABCV34_RS02280 at 509.356 kb on + strand, within ABCV34_RS02280 at 509.356 kb on + strand, within ABCV34_RS02280 at 509.356 kb on + strand, within ABCV34_RS02280 at 509.357 kb on - strand, within ABCV34_RS02280 at 509.447 kb on - strand, within ABCV34_RS02280 at 509.452 kb on + strand, within ABCV34_RS02280 at 509.452 kb on + strand, within ABCV34_RS02280 at 509.453 kb on - strand, within ABCV34_RS02280 at 509.453 kb on - strand, within ABCV34_RS02280 at 509.453 kb on - strand, within ABCV34_RS02280 at 509.453 kb on - strand, within ABCV34_RS02280 at 509.619 kb on + strand, within ABCV34_RS02285 at 509.619 kb on + strand, within ABCV34_RS02285 at 509.619 kb on + strand, within ABCV34_RS02285 at 509.619 kb on + strand, within ABCV34_RS02285 at 509.619 kb on + strand, within ABCV34_RS02285 at 509.619 kb on + strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.620 kb on - strand, within ABCV34_RS02285 at 509.877 kb on - strand, within ABCV34_RS02285 at 509.962 kb on + strand at 509.994 kb on - strand at 510.092 kb on - strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.196 kb on + strand at 510.197 kb on - strand at 510.197 kb on - strand at 510.197 kb on - strand at 510.197 kb on - strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.200 kb on + strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.201 kb on - strand at 510.210 kb on + strand at 510.349 kb on + strand, within ABCV34_RS02290 at 510.400 kb on + strand, within ABCV34_RS02290 at 510.400 kb on + strand, within ABCV34_RS02290 at 510.401 kb on - strand, within ABCV34_RS02290 at 510.550 kb on + strand, within ABCV34_RS02290 at 510.550 kb on + strand, within ABCV34_RS02290 at 510.550 kb on + strand, within ABCV34_RS02290 at 510.550 kb on + strand, within ABCV34_RS02290 at 510.551 kb on - strand, within ABCV34_RS02290
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 508,135 - ABCV34_RS02275 0.50 -0.6 508,135 - ABCV34_RS02275 0.50 -1.8 508,135 - ABCV34_RS02275 0.50 +0.6 508,135 - ABCV34_RS02275 0.50 -0.9 508,135 - ABCV34_RS02275 0.50 -0.5 508,135 - ABCV34_RS02275 0.50 -3.0 508,135 - ABCV34_RS02275 0.50 -1.9 508,174 - ABCV34_RS02275 0.52 -0.5 508,174 - ABCV34_RS02275 0.52 -1.3 508,379 + ABCV34_RS02275 0.63 -1.3 508,379 + ABCV34_RS02275 0.63 +0.3 508,379 + ABCV34_RS02275 0.63 +2.3 508,379 + ABCV34_RS02275 0.63 -1.5 508,379 + ABCV34_RS02275 0.63 -0.7 508,379 + ABCV34_RS02275 0.63 -1.6 508,379 + ABCV34_RS02275 0.63 -4.3 508,379 + ABCV34_RS02275 0.63 -3.1 508,379 + ABCV34_RS02275 0.63 +0.7 508,379 + ABCV34_RS02275 0.63 -1.1 508,379 + ABCV34_RS02275 0.63 -1.6 508,379 + ABCV34_RS02275 0.63 +0.6 508,380 - ABCV34_RS02275 0.63 +1.5 508,380 - ABCV34_RS02275 0.63 -0.5 508,380 - ABCV34_RS02275 0.63 -2.1 508,380 - ABCV34_RS02275 0.63 -1.5 508,380 - ABCV34_RS02275 0.63 -1.4 508,598 + ABCV34_RS02275 0.75 +0.6 509,224 + ABCV34_RS02280 0.30 -3.6 509,224 + ABCV34_RS02280 0.30 +1.1 509,224 + ABCV34_RS02280 0.30 +0.1 509,224 + ABCV34_RS02280 0.30 -0.6 509,224 + ABCV34_RS02280 0.30 +0.8 509,224 + ABCV34_RS02280 0.30 -2.8 509,224 + ABCV34_RS02280 0.30 -0.7 509,225 - ABCV34_RS02280 0.30 +1.9 509,225 - ABCV34_RS02280 0.30 -0.7 509,225 - ABCV34_RS02280 0.30 -1.4 509,225 - ABCV34_RS02280 0.30 +1.5 509,225 - ABCV34_RS02280 0.30 -1.0 509,225 - ABCV34_RS02280 0.30 -1.5 509,225 - ABCV34_RS02280 0.30 +1.5 509,225 - ABCV34_RS02280 0.30 +0.1 509,225 - ABCV34_RS02280 0.30 +0.0 509,356 + ABCV34_RS02280 0.58 +1.8 509,356 + ABCV34_RS02280 0.58 +0.3 509,356 + ABCV34_RS02280 0.58 +0.1 509,356 + ABCV34_RS02280 0.58 -1.1 509,356 + ABCV34_RS02280 0.58 -1.4 509,357 - ABCV34_RS02280 0.58 -0.2 509,447 - ABCV34_RS02280 0.77 -0.3 509,452 + ABCV34_RS02280 0.78 -0.5 509,452 + ABCV34_RS02280 0.78 +1.2 509,453 - ABCV34_RS02280 0.78 -2.1 509,453 - ABCV34_RS02280 0.78 +0.5 509,453 - ABCV34_RS02280 0.78 +1.2 509,453 - ABCV34_RS02280 0.78 +0.6 509,619 + ABCV34_RS02285 0.15 -1.6 509,619 + ABCV34_RS02285 0.15 -0.2 509,619 + ABCV34_RS02285 0.15 -0.4 509,619 + ABCV34_RS02285 0.15 -0.0 509,619 + ABCV34_RS02285 0.15 -1.5 509,619 + ABCV34_RS02285 0.15 -0.7 509,620 - ABCV34_RS02285 0.15 -1.7 509,620 - ABCV34_RS02285 0.15 +1.0 509,620 - ABCV34_RS02285 0.15 -1.5 509,620 - ABCV34_RS02285 0.15 -1.9 509,620 - ABCV34_RS02285 0.15 -0.7 509,620 - ABCV34_RS02285 0.15 -0.1 509,620 - ABCV34_RS02285 0.15 -3.2 509,620 - ABCV34_RS02285 0.15 -1.1 509,620 - ABCV34_RS02285 0.15 -1.6 509,620 - ABCV34_RS02285 0.15 -0.7 509,620 - ABCV34_RS02285 0.15 -0.9 509,620 - ABCV34_RS02285 0.15 +2.1 509,620 - ABCV34_RS02285 0.15 -0.8 509,877 - ABCV34_RS02285 0.73 -1.8 509,962 + +0.3 509,994 - -2.4 510,092 - -2.1 510,196 + -2.0 510,196 + +0.5 510,196 + -3.5 510,196 + -1.4 510,196 + -2.6 510,196 + -1.1 510,196 + +1.2 510,196 + -3.6 510,196 + +0.5 510,197 - -0.7 510,197 - +1.1 510,197 - -2.4 510,197 - -0.5 510,200 + -2.1 510,200 + -2.0 510,200 + -1.5 510,200 + -0.8 510,200 + -3.2 510,200 + -3.3 510,200 + +1.0 510,200 + -2.7 510,200 + -2.1 510,200 + -2.1 510,200 + -2.6 510,200 + -0.9 510,200 + -1.8 510,200 + -1.5 510,200 + -1.2 510,200 + -2.5 510,200 + -1.4 510,200 + -0.8 510,200 + -2.8 510,200 + -1.1 510,201 - -2.2 510,201 - +0.7 510,201 - -0.6 510,201 - -2.3 510,201 - -1.6 510,201 - -1.7 510,201 - -3.5 510,201 - -0.6 510,201 - -3.7 510,210 + -1.4 510,349 + ABCV34_RS02290 0.16 -3.6 510,400 + ABCV34_RS02290 0.20 -2.3 510,400 + ABCV34_RS02290 0.20 +1.1 510,401 - ABCV34_RS02290 0.20 -1.4 510,550 + ABCV34_RS02290 0.33 -1.7 510,550 + ABCV34_RS02290 0.33 -2.2 510,550 + ABCV34_RS02290 0.33 +1.1 510,550 + ABCV34_RS02290 0.33 -2.3 510,551 - ABCV34_RS02290 0.33 -2.8
Or see this region's nucleotide sequence