Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS01885 and ABCV34_RS01890 overlap by 1 nucleotides ABCV34_RS01890 and ABCV34_RS01895 are separated by 166 nucleotides
ABCV34_RS01885: ABCV34_RS01885 - RluA family pseudouridine synthase, at 413,825 to 414,790
_RS01885
ABCV34_RS01890: ABCV34_RS01890 - peptidoglycan editing factor PgeF, at 414,790 to 415,614
_RS01890
ABCV34_RS01895: ABCV34_RS01895 - class I poly(R)-hydroxyalkanoic acid synthase, at 415,781 to 417,370
_RS01895
Position (kb) 414
415
416 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 413.810 kb on - strand at 413.810 kb on - strand at 413.810 kb on - strand at 413.810 kb on - strand at 413.810 kb on - strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.811 kb on + strand at 413.812 kb on - strand at 413.812 kb on - strand at 413.812 kb on - strand at 413.812 kb on - strand at 413.812 kb on - strand at 413.812 kb on - strand at 413.812 kb on - strand at 413.812 kb on - strand at 414.365 kb on + strand, within ABCV34_RS01885 at 414.365 kb on + strand, within ABCV34_RS01885 at 414.365 kb on + strand, within ABCV34_RS01885 at 414.366 kb on - strand, within ABCV34_RS01885 at 414.494 kb on + strand, within ABCV34_RS01885 at 414.495 kb on - strand, within ABCV34_RS01885 at 414.495 kb on - strand, within ABCV34_RS01885 at 414.495 kb on - strand, within ABCV34_RS01885 at 414.495 kb on - strand, within ABCV34_RS01885 at 414.589 kb on + strand, within ABCV34_RS01885 at 414.590 kb on - strand, within ABCV34_RS01885 at 414.590 kb on - strand, within ABCV34_RS01885 at 414.590 kb on - strand, within ABCV34_RS01885 at 414.590 kb on - strand, within ABCV34_RS01885 at 414.856 kb on + strand at 414.856 kb on + strand at 414.856 kb on + strand at 414.856 kb on + strand at 414.857 kb on - strand at 414.857 kb on - strand at 414.857 kb on - strand at 415.420 kb on + strand, within ABCV34_RS01890 at 415.420 kb on + strand, within ABCV34_RS01890 at 415.420 kb on + strand, within ABCV34_RS01890 at 415.421 kb on - strand, within ABCV34_RS01890 at 415.421 kb on - strand, within ABCV34_RS01890 at 415.421 kb on - strand, within ABCV34_RS01890 at 415.421 kb on - strand, within ABCV34_RS01890 at 415.534 kb on + strand at 415.534 kb on + strand at 415.534 kb on + strand at 415.534 kb on + strand at 415.534 kb on + strand at 415.535 kb on - strand at 415.610 kb on + strand at 415.610 kb on + strand at 415.610 kb on + strand at 415.610 kb on + strand at 415.611 kb on - strand at 415.611 kb on - strand at 415.611 kb on - strand at 415.633 kb on + strand at 415.634 kb on - strand at 415.634 kb on - strand at 415.652 kb on + strand at 415.661 kb on - strand at 415.685 kb on + strand at 415.685 kb on + strand at 415.685 kb on + strand at 415.685 kb on + strand at 415.686 kb on - strand at 415.686 kb on - strand at 415.759 kb on + strand at 415.760 kb on - strand at 415.955 kb on + strand, within ABCV34_RS01895 at 415.955 kb on + strand, within ABCV34_RS01895 at 415.955 kb on + strand, within ABCV34_RS01895 at 415.956 kb on - strand, within ABCV34_RS01895 at 415.956 kb on - strand, within ABCV34_RS01895 at 415.956 kb on - strand, within ABCV34_RS01895 at 415.956 kb on - strand, within ABCV34_RS01895 at 416.249 kb on + strand, within ABCV34_RS01895 at 416.345 kb on + strand, within ABCV34_RS01895 at 416.345 kb on + strand, within ABCV34_RS01895 at 416.345 kb on + strand, within ABCV34_RS01895 at 416.345 kb on + strand, within ABCV34_RS01895 at 416.345 kb on + strand, within ABCV34_RS01895 at 416.345 kb on + strand, within ABCV34_RS01895 at 416.345 kb on + strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.346 kb on - strand, within ABCV34_RS01895 at 416.348 kb on + strand, within ABCV34_RS01895 at 416.348 kb on + strand, within ABCV34_RS01895 at 416.348 kb on + strand, within ABCV34_RS01895 at 416.348 kb on + strand, within ABCV34_RS01895 at 416.348 kb on + strand, within ABCV34_RS01895 at 416.348 kb on + strand, within ABCV34_RS01895 at 416.348 kb on + strand, within ABCV34_RS01895 at 416.349 kb on - strand, within ABCV34_RS01895 at 416.349 kb on - strand, within ABCV34_RS01895 at 416.349 kb on - strand, within ABCV34_RS01895 at 416.349 kb on - strand, within ABCV34_RS01895 at 416.349 kb on - strand, within ABCV34_RS01895 at 416.349 kb on - strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.414 kb on + strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.415 kb on - strand, within ABCV34_RS01895 at 416.483 kb on + strand, within ABCV34_RS01895 at 416.483 kb on + strand, within ABCV34_RS01895 at 416.483 kb on + strand, within ABCV34_RS01895 at 416.483 kb on + strand, within ABCV34_RS01895 at 416.483 kb on + strand, within ABCV34_RS01895 at 416.483 kb on + strand, within ABCV34_RS01895 at 416.484 kb on - strand, within ABCV34_RS01895 at 416.484 kb on - strand, within ABCV34_RS01895 at 416.484 kb on - strand, within ABCV34_RS01895 at 416.484 kb on - strand, within ABCV34_RS01895 at 416.484 kb on - strand, within ABCV34_RS01895 at 416.484 kb on - strand, within ABCV34_RS01895 at 416.484 kb on - strand, within ABCV34_RS01895
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 413,810 - -0.9 413,810 - -1.4 413,810 - -1.9 413,810 - +1.6 413,810 - -1.2 413,811 + +0.4 413,811 + -1.1 413,811 + -1.6 413,811 + -0.3 413,811 + +1.8 413,811 + -1.1 413,811 + +0.1 413,811 + -0.6 413,811 + +1.1 413,811 + +0.2 413,812 - -1.3 413,812 - -0.8 413,812 - +0.6 413,812 - -1.7 413,812 - +0.9 413,812 - +1.2 413,812 - -1.4 413,812 - -1.1 414,365 + ABCV34_RS01885 0.56 -1.1 414,365 + ABCV34_RS01885 0.56 +1.1 414,365 + ABCV34_RS01885 0.56 +1.1 414,366 - ABCV34_RS01885 0.56 -0.3 414,494 + ABCV34_RS01885 0.69 +0.5 414,495 - ABCV34_RS01885 0.69 +2.1 414,495 - ABCV34_RS01885 0.69 -2.2 414,495 - ABCV34_RS01885 0.69 +0.5 414,495 - ABCV34_RS01885 0.69 -1.9 414,589 + ABCV34_RS01885 0.79 -2.9 414,590 - ABCV34_RS01885 0.79 -0.5 414,590 - ABCV34_RS01885 0.79 -0.9 414,590 - ABCV34_RS01885 0.79 -0.7 414,590 - ABCV34_RS01885 0.79 -1.3 414,856 + -1.7 414,856 + -0.5 414,856 + -0.9 414,856 + -0.9 414,857 - -0.3 414,857 - -3.4 414,857 - +0.3 415,420 + ABCV34_RS01890 0.76 -3.1 415,420 + ABCV34_RS01890 0.76 -0.7 415,420 + ABCV34_RS01890 0.76 -1.0 415,421 - ABCV34_RS01890 0.76 -2.1 415,421 - ABCV34_RS01890 0.76 -0.1 415,421 - ABCV34_RS01890 0.76 +1.7 415,421 - ABCV34_RS01890 0.76 -1.0 415,534 + -2.5 415,534 + +1.0 415,534 + -0.7 415,534 + -0.9 415,534 + +1.9 415,535 - -2.1 415,610 + -1.9 415,610 + +0.1 415,610 + -1.7 415,610 + -2.5 415,611 - -0.1 415,611 - -2.9 415,611 - -2.1 415,633 + -1.6 415,634 - -0.4 415,634 - -0.1 415,652 + -1.3 415,661 - -2.8 415,685 + -2.1 415,685 + -0.2 415,685 + -2.6 415,685 + -1.8 415,686 - -1.4 415,686 - +4.1 415,759 + -2.5 415,760 - -1.6 415,955 + ABCV34_RS01895 0.11 -3.5 415,955 + ABCV34_RS01895 0.11 -0.7 415,955 + ABCV34_RS01895 0.11 +2.4 415,956 - ABCV34_RS01895 0.11 -2.4 415,956 - ABCV34_RS01895 0.11 -1.6 415,956 - ABCV34_RS01895 0.11 -0.7 415,956 - ABCV34_RS01895 0.11 +0.1 416,249 + ABCV34_RS01895 0.29 +1.0 416,345 + ABCV34_RS01895 0.35 -0.3 416,345 + ABCV34_RS01895 0.35 -1.5 416,345 + ABCV34_RS01895 0.35 +0.1 416,345 + ABCV34_RS01895 0.35 -0.3 416,345 + ABCV34_RS01895 0.35 -4.0 416,345 + ABCV34_RS01895 0.35 -2.9 416,345 + ABCV34_RS01895 0.35 -0.6 416,346 - ABCV34_RS01895 0.36 +1.3 416,346 - ABCV34_RS01895 0.36 -1.9 416,346 - ABCV34_RS01895 0.36 +0.2 416,346 - ABCV34_RS01895 0.36 +0.3 416,346 - ABCV34_RS01895 0.36 -2.0 416,346 - ABCV34_RS01895 0.36 -2.8 416,346 - ABCV34_RS01895 0.36 -1.1 416,346 - ABCV34_RS01895 0.36 +1.4 416,346 - ABCV34_RS01895 0.36 -2.5 416,346 - ABCV34_RS01895 0.36 -1.8 416,346 - ABCV34_RS01895 0.36 -0.6 416,346 - ABCV34_RS01895 0.36 -0.7 416,346 - ABCV34_RS01895 0.36 -0.0 416,348 + ABCV34_RS01895 0.36 -3.6 416,348 + ABCV34_RS01895 0.36 -1.3 416,348 + ABCV34_RS01895 0.36 -0.7 416,348 + ABCV34_RS01895 0.36 -0.8 416,348 + ABCV34_RS01895 0.36 -0.2 416,348 + ABCV34_RS01895 0.36 -2.6 416,348 + ABCV34_RS01895 0.36 -0.5 416,349 - ABCV34_RS01895 0.36 -1.4 416,349 - ABCV34_RS01895 0.36 -1.1 416,349 - ABCV34_RS01895 0.36 -0.0 416,349 - ABCV34_RS01895 0.36 -0.3 416,349 - ABCV34_RS01895 0.36 -1.6 416,349 - ABCV34_RS01895 0.36 -0.5 416,414 + ABCV34_RS01895 0.40 +0.4 416,414 + ABCV34_RS01895 0.40 +0.3 416,414 + ABCV34_RS01895 0.40 -0.3 416,414 + ABCV34_RS01895 0.40 +1.3 416,414 + ABCV34_RS01895 0.40 +0.6 416,414 + ABCV34_RS01895 0.40 -1.3 416,414 + ABCV34_RS01895 0.40 -1.3 416,414 + ABCV34_RS01895 0.40 -1.7 416,415 - ABCV34_RS01895 0.40 -0.0 416,415 - ABCV34_RS01895 0.40 -1.5 416,415 - ABCV34_RS01895 0.40 -0.3 416,415 - ABCV34_RS01895 0.40 -2.5 416,415 - ABCV34_RS01895 0.40 -0.7 416,415 - ABCV34_RS01895 0.40 +1.1 416,415 - ABCV34_RS01895 0.40 +0.4 416,415 - ABCV34_RS01895 0.40 -0.3 416,483 + ABCV34_RS01895 0.44 -0.9 416,483 + ABCV34_RS01895 0.44 +1.2 416,483 + ABCV34_RS01895 0.44 +0.1 416,483 + ABCV34_RS01895 0.44 -0.7 416,483 + ABCV34_RS01895 0.44 -5.0 416,483 + ABCV34_RS01895 0.44 -1.2 416,484 - ABCV34_RS01895 0.44 -0.3 416,484 - ABCV34_RS01895 0.44 -3.1 416,484 - ABCV34_RS01895 0.44 -2.5 416,484 - ABCV34_RS01895 0.44 +1.1 416,484 - ABCV34_RS01895 0.44 -0.0 416,484 - ABCV34_RS01895 0.44 -1.8 416,484 - ABCV34_RS01895 0.44 -0.4
Or see this region's nucleotide sequence