Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS00920 and ABCV34_RS00925 are separated by 55 nucleotides ABCV34_RS00925 and ABCV34_RS00930 overlap by 4 nucleotides
ABCV34_RS00920: ABCV34_RS00920 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 196,796 to 197,791
_RS00920
ABCV34_RS00925: ABCV34_RS00925 - NAD(P)-dependent oxidoreductase, at 197,847 to 198,722
_RS00925
ABCV34_RS00930: ABCV34_RS00930 - YdgA family protein, at 198,719 to 200,152
_RS00930
Position (kb) 197
198
199 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 198.303 kb on + strand, within ABCV34_RS00925 at 198.303 kb on + strand, within ABCV34_RS00925 at 198.636 kb on + strand at 198.676 kb on + strand at 198.676 kb on + strand at 198.676 kb on + strand at 198.676 kb on + strand at 198.676 kb on + strand at 198.677 kb on - strand at 198.677 kb on - strand at 198.677 kb on - strand at 198.677 kb on - strand at 198.677 kb on - strand at 198.941 kb on + strand, within ABCV34_RS00930 at 198.941 kb on + strand, within ABCV34_RS00930 at 198.941 kb on + strand, within ABCV34_RS00930 at 198.941 kb on + strand, within ABCV34_RS00930 at 198.941 kb on + strand, within ABCV34_RS00930 at 198.941 kb on + strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 198.942 kb on - strand, within ABCV34_RS00930 at 199.294 kb on + strand, within ABCV34_RS00930 at 199.294 kb on + strand, within ABCV34_RS00930 at 199.294 kb on + strand, within ABCV34_RS00930 at 199.295 kb on - strand, within ABCV34_RS00930 at 199.295 kb on - strand, within ABCV34_RS00930 at 199.295 kb on - strand, within ABCV34_RS00930 at 199.295 kb on - strand, within ABCV34_RS00930 at 199.529 kb on + strand, within ABCV34_RS00930 at 199.529 kb on + strand, within ABCV34_RS00930 at 199.529 kb on + strand, within ABCV34_RS00930 at 199.530 kb on - strand, within ABCV34_RS00930 at 199.530 kb on - strand, within ABCV34_RS00930
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 198,303 + ABCV34_RS00925 0.52 -1.0 198,303 + ABCV34_RS00925 0.52 +0.6 198,636 + -0.2 198,676 + -2.4 198,676 + -1.5 198,676 + -1.3 198,676 + -0.2 198,676 + -1.1 198,677 - -2.6 198,677 - -0.8 198,677 - -1.5 198,677 - -0.6 198,677 - -1.5 198,941 + ABCV34_RS00930 0.15 -1.8 198,941 + ABCV34_RS00930 0.15 +2.0 198,941 + ABCV34_RS00930 0.15 -0.0 198,941 + ABCV34_RS00930 0.15 -1.5 198,941 + ABCV34_RS00930 0.15 -1.8 198,941 + ABCV34_RS00930 0.15 -1.0 198,942 - ABCV34_RS00930 0.16 +0.3 198,942 - ABCV34_RS00930 0.16 -0.7 198,942 - ABCV34_RS00930 0.16 -0.8 198,942 - ABCV34_RS00930 0.16 -4.0 198,942 - ABCV34_RS00930 0.16 +0.2 198,942 - ABCV34_RS00930 0.16 +0.0 198,942 - ABCV34_RS00930 0.16 -1.6 198,942 - ABCV34_RS00930 0.16 -1.1 198,942 - ABCV34_RS00930 0.16 -2.3 198,942 - ABCV34_RS00930 0.16 -2.3 199,294 + ABCV34_RS00930 0.40 -2.5 199,294 + ABCV34_RS00930 0.40 -0.6 199,294 + ABCV34_RS00930 0.40 -2.6 199,295 - ABCV34_RS00930 0.40 -0.7 199,295 - ABCV34_RS00930 0.40 -0.2 199,295 - ABCV34_RS00930 0.40 -0.3 199,295 - ABCV34_RS00930 0.40 +0.1 199,529 + ABCV34_RS00930 0.56 -2.7 199,529 + ABCV34_RS00930 0.56 -0.9 199,529 + ABCV34_RS00930 0.56 -2.5 199,530 - ABCV34_RS00930 0.57 -0.3 199,530 - ABCV34_RS00930 0.57 -1.4
Or see this region's nucleotide sequence