Experiment: Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS00710 and ABCV34_RS00715 are separated by 43 nucleotides ABCV34_RS00715 and ABCV34_RS00720 are separated by 13 nucleotides ABCV34_RS00720 and ABCV34_RS00725 are separated by 101 nucleotides ABCV34_RS00725 and ABCV34_RS00730 overlap by 8 nucleotides
ABCV34_RS00710: ABCV34_RS00710 - VOC family protein, at 154,232 to 154,678
_RS00710
ABCV34_RS00715: ABCV34_RS00715 - MaoC/PaaZ C-terminal domain-containing protein, at 154,722 to 155,522
_RS00715
ABCV34_RS00720: ABCV34_RS00720 - alpha/beta hydrolase, at 155,536 to 156,321
_RS00720
ABCV34_RS00725: ABCV34_RS00725 - SDR family NAD(P)-dependent oxidoreductase, at 156,423 to 157,181
_RS00725
ABCV34_RS00730: ABCV34_RS00730 - amidase, at 157,174 to 158,541
_RS00730
Position (kb) 155
156
157 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.562 kb on + strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.563 kb on - strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.577 kb on + strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.578 kb on - strand, within ABCV34_RS00710 at 154.677 kb on - strand at 154.677 kb on - strand at 154.803 kb on + strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.804 kb on - strand, within ABCV34_RS00715 at 154.848 kb on + strand, within ABCV34_RS00715 at 154.848 kb on + strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.849 kb on - strand, within ABCV34_RS00715 at 154.932 kb on + strand, within ABCV34_RS00715 at 154.932 kb on + strand, within ABCV34_RS00715 at 154.932 kb on + strand, within ABCV34_RS00715 at 154.933 kb on - strand, within ABCV34_RS00715 at 155.003 kb on + strand, within ABCV34_RS00715 at 155.004 kb on - strand, within ABCV34_RS00715 at 155.004 kb on - strand, within ABCV34_RS00715 at 155.023 kb on + strand, within ABCV34_RS00715 at 155.024 kb on - strand, within ABCV34_RS00715 at 155.024 kb on - strand, within ABCV34_RS00715 at 155.034 kb on + strand, within ABCV34_RS00715 at 155.035 kb on - strand, within ABCV34_RS00715 at 155.035 kb on - strand, within ABCV34_RS00715 at 155.082 kb on + strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.083 kb on - strand, within ABCV34_RS00715 at 155.097 kb on + strand, within ABCV34_RS00715 at 155.097 kb on + strand, within ABCV34_RS00715 at 155.097 kb on + strand, within ABCV34_RS00715 at 155.098 kb on - strand, within ABCV34_RS00715 at 155.098 kb on - strand, within ABCV34_RS00715 at 155.175 kb on + strand, within ABCV34_RS00715 at 155.175 kb on + strand, within ABCV34_RS00715 at 155.175 kb on + strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.176 kb on - strand, within ABCV34_RS00715 at 155.223 kb on + strand, within ABCV34_RS00715 at 155.223 kb on + strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.224 kb on - strand, within ABCV34_RS00715 at 155.513 kb on - strand at 155.513 kb on - strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.550 kb on + strand at 155.551 kb on - strand at 155.551 kb on - strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.572 kb on + strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.573 kb on - strand at 155.574 kb on + strand at 155.575 kb on - strand at 155.634 kb on + strand, within ABCV34_RS00720 at 155.634 kb on + strand, within ABCV34_RS00720 at 155.634 kb on + strand, within ABCV34_RS00720 at 155.634 kb on + strand, within ABCV34_RS00720 at 155.635 kb on - strand, within ABCV34_RS00720 at 155.683 kb on + strand, within ABCV34_RS00720 at 155.683 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.917 kb on + strand, within ABCV34_RS00720 at 155.918 kb on - strand, within ABCV34_RS00720 at 155.918 kb on - strand, within ABCV34_RS00720 at 155.918 kb on - strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.070 kb on + strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.071 kb on - strand, within ABCV34_RS00720 at 156.269 kb on + strand at 156.269 kb on + strand at 156.269 kb on + strand at 156.269 kb on + strand at 156.269 kb on + strand at 156.270 kb on - strand at 156.270 kb on - strand at 156.270 kb on - strand at 156.859 kb on - strand, within ABCV34_RS00725 at 156.888 kb on + strand, within ABCV34_RS00725 at 156.888 kb on + strand, within ABCV34_RS00725 at 156.889 kb on - strand, within ABCV34_RS00725 at 156.990 kb on + strand, within ABCV34_RS00725 at 156.990 kb on + strand, within ABCV34_RS00725 at 156.991 kb on - strand, within ABCV34_RS00725 at 156.991 kb on - strand, within ABCV34_RS00725 at 157.038 kb on + strand, within ABCV34_RS00725 at 157.128 kb on + strand at 157.128 kb on + strand at 157.129 kb on - strand at 157.129 kb on - strand at 157.129 kb on - strand at 157.146 kb on + strand at 157.146 kb on + strand at 157.146 kb on + strand at 157.146 kb on + strand at 157.147 kb on - strand at 157.147 kb on - strand at 157.222 kb on + strand at 157.222 kb on + strand at 157.222 kb on + strand at 157.222 kb on + strand at 157.223 kb on - strand at 157.223 kb on - strand at 157.234 kb on - strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.264 kb on + strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.265 kb on - strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.306 kb on + strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand at 157.307 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-M6-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 154,562 + ABCV34_RS00710 0.74 -1.6 154,562 + ABCV34_RS00710 0.74 -1.6 154,562 + ABCV34_RS00710 0.74 -0.5 154,562 + ABCV34_RS00710 0.74 -1.7 154,562 + ABCV34_RS00710 0.74 -0.3 154,563 - ABCV34_RS00710 0.74 -1.2 154,563 - ABCV34_RS00710 0.74 -3.2 154,563 - ABCV34_RS00710 0.74 -3.0 154,563 - ABCV34_RS00710 0.74 -2.0 154,563 - ABCV34_RS00710 0.74 -1.6 154,563 - ABCV34_RS00710 0.74 +0.2 154,563 - ABCV34_RS00710 0.74 -1.1 154,563 - ABCV34_RS00710 0.74 -2.0 154,563 - ABCV34_RS00710 0.74 -1.2 154,563 - ABCV34_RS00710 0.74 +0.6 154,563 - ABCV34_RS00710 0.74 -1.5 154,563 - ABCV34_RS00710 0.74 -1.5 154,563 - ABCV34_RS00710 0.74 -1.8 154,563 - ABCV34_RS00710 0.74 -0.4 154,563 - ABCV34_RS00710 0.74 -2.1 154,577 + ABCV34_RS00710 0.77 -0.4 154,577 + ABCV34_RS00710 0.77 -1.3 154,577 + ABCV34_RS00710 0.77 -1.8 154,577 + ABCV34_RS00710 0.77 -1.1 154,578 - ABCV34_RS00710 0.77 -0.1 154,578 - ABCV34_RS00710 0.77 -0.3 154,578 - ABCV34_RS00710 0.77 -1.7 154,578 - ABCV34_RS00710 0.77 -0.6 154,578 - ABCV34_RS00710 0.77 +0.0 154,578 - ABCV34_RS00710 0.77 +0.3 154,578 - ABCV34_RS00710 0.77 -2.2 154,578 - ABCV34_RS00710 0.77 -1.7 154,578 - ABCV34_RS00710 0.77 -0.9 154,578 - ABCV34_RS00710 0.77 +1.3 154,677 - -2.1 154,677 - -0.3 154,803 + ABCV34_RS00715 0.10 -0.5 154,804 - ABCV34_RS00715 0.10 -2.0 154,804 - ABCV34_RS00715 0.10 -0.9 154,804 - ABCV34_RS00715 0.10 +0.2 154,804 - ABCV34_RS00715 0.10 -1.7 154,804 - ABCV34_RS00715 0.10 +1.3 154,848 + ABCV34_RS00715 0.16 -2.8 154,848 + ABCV34_RS00715 0.16 -1.3 154,849 - ABCV34_RS00715 0.16 -1.5 154,849 - ABCV34_RS00715 0.16 +0.1 154,849 - ABCV34_RS00715 0.16 -1.7 154,849 - ABCV34_RS00715 0.16 -1.1 154,932 + ABCV34_RS00715 0.26 +0.1 154,932 + ABCV34_RS00715 0.26 -3.4 154,932 + ABCV34_RS00715 0.26 -0.0 154,933 - ABCV34_RS00715 0.26 -1.9 155,003 + ABCV34_RS00715 0.35 -0.5 155,004 - ABCV34_RS00715 0.35 -0.9 155,004 - ABCV34_RS00715 0.35 -1.5 155,023 + ABCV34_RS00715 0.38 -1.8 155,024 - ABCV34_RS00715 0.38 -0.2 155,024 - ABCV34_RS00715 0.38 -0.0 155,034 + ABCV34_RS00715 0.39 -1.2 155,035 - ABCV34_RS00715 0.39 -1.5 155,035 - ABCV34_RS00715 0.39 +0.9 155,082 + ABCV34_RS00715 0.45 -1.7 155,083 - ABCV34_RS00715 0.45 -0.6 155,083 - ABCV34_RS00715 0.45 -1.5 155,083 - ABCV34_RS00715 0.45 +0.2 155,083 - ABCV34_RS00715 0.45 -0.2 155,097 + ABCV34_RS00715 0.47 -1.1 155,097 + ABCV34_RS00715 0.47 -2.4 155,097 + ABCV34_RS00715 0.47 -0.2 155,098 - ABCV34_RS00715 0.47 +1.2 155,098 - ABCV34_RS00715 0.47 -0.9 155,175 + ABCV34_RS00715 0.57 -0.6 155,175 + ABCV34_RS00715 0.57 -0.8 155,175 + ABCV34_RS00715 0.57 -2.8 155,176 - ABCV34_RS00715 0.57 +0.5 155,176 - ABCV34_RS00715 0.57 +0.5 155,176 - ABCV34_RS00715 0.57 -1.1 155,176 - ABCV34_RS00715 0.57 -0.7 155,176 - ABCV34_RS00715 0.57 -2.4 155,223 + ABCV34_RS00715 0.63 -1.2 155,223 + ABCV34_RS00715 0.63 +1.7 155,224 - ABCV34_RS00715 0.63 -1.2 155,224 - ABCV34_RS00715 0.63 +2.0 155,224 - ABCV34_RS00715 0.63 -2.9 155,224 - ABCV34_RS00715 0.63 -1.2 155,513 - -1.3 155,513 - -0.3 155,550 + +0.2 155,550 + +0.3 155,550 + -3.3 155,550 + -0.8 155,550 + -0.5 155,550 + -0.8 155,551 - +0.7 155,551 - -1.9 155,572 + -0.6 155,572 + -1.6 155,572 + -0.7 155,572 + -1.7 155,572 + -1.4 155,573 - -1.0 155,573 - -1.8 155,573 - +0.4 155,573 - +1.1 155,573 - -1.2 155,574 + -2.0 155,575 - -1.2 155,634 + ABCV34_RS00720 0.12 -1.0 155,634 + ABCV34_RS00720 0.12 +0.2 155,634 + ABCV34_RS00720 0.12 -1.9 155,634 + ABCV34_RS00720 0.12 -0.2 155,635 - ABCV34_RS00720 0.13 +0.3 155,683 + ABCV34_RS00720 0.19 +1.0 155,683 + ABCV34_RS00720 0.19 +0.9 155,917 + ABCV34_RS00720 0.48 -2.1 155,917 + ABCV34_RS00720 0.48 -1.1 155,917 + ABCV34_RS00720 0.48 +0.3 155,917 + ABCV34_RS00720 0.48 +0.8 155,918 - ABCV34_RS00720 0.49 +1.0 155,918 - ABCV34_RS00720 0.49 -1.8 155,918 - ABCV34_RS00720 0.49 -0.2 156,070 + ABCV34_RS00720 0.68 -1.2 156,070 + ABCV34_RS00720 0.68 -1.9 156,070 + ABCV34_RS00720 0.68 -1.9 156,070 + ABCV34_RS00720 0.68 -1.4 156,070 + ABCV34_RS00720 0.68 -1.3 156,071 - ABCV34_RS00720 0.68 +1.2 156,071 - ABCV34_RS00720 0.68 -0.9 156,071 - ABCV34_RS00720 0.68 -0.4 156,071 - ABCV34_RS00720 0.68 -1.7 156,269 + -1.9 156,269 + -1.5 156,269 + -1.8 156,269 + -2.5 156,269 + -1.2 156,270 - +1.8 156,270 - -0.5 156,270 - -2.2 156,859 - ABCV34_RS00725 0.57 -1.2 156,888 + ABCV34_RS00725 0.61 -2.1 156,888 + ABCV34_RS00725 0.61 -0.8 156,889 - ABCV34_RS00725 0.61 -0.1 156,990 + ABCV34_RS00725 0.75 -0.5 156,990 + ABCV34_RS00725 0.75 -2.5 156,991 - ABCV34_RS00725 0.75 -1.8 156,991 - ABCV34_RS00725 0.75 -3.7 157,038 + ABCV34_RS00725 0.81 -3.4 157,128 + -0.6 157,128 + -1.6 157,129 - +1.3 157,129 - -1.0 157,129 - -2.0 157,146 + +1.0 157,146 + -0.2 157,146 + -0.8 157,146 + -0.8 157,147 - +0.8 157,147 - +1.3 157,222 + +0.5 157,222 + -2.7 157,222 + -1.0 157,222 + -0.6 157,223 - -0.2 157,223 - +0.7 157,234 - +0.1 157,264 + -3.3 157,264 + -1.4 157,264 + -0.2 157,264 + +1.0 157,264 + -2.7 157,264 + -0.9 157,264 + +0.1 157,265 - +0.1 157,265 - -0.4 157,265 - -1.3 157,265 - -0.0 157,265 - +0.5 157,265 - -3.5 157,265 - +2.2 157,265 - -0.7 157,265 - +1.3 157,265 - +1.4 157,306 + -1.7 157,306 + -0.0 157,306 + -3.1 157,306 + -2.6 157,306 + +1.1 157,307 - -2.0 157,307 - -1.0 157,307 - -1.6 157,307 - -1.9 157,307 - -1.0 157,307 - -2.0 157,307 - -1.9 157,307 - -2.4 157,307 - -0.7 157,307 - +0.2
Or see this region's nucleotide sequence