Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS14850

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
3,154,823	+		ABCV34_RS14845	0.55	+0.2
3,154,823	+		ABCV34_RS14845	0.55	-0.2
3,154,824	-		ABCV34_RS14845	0.56	-2.9
3,154,824	-		ABCV34_RS14845	0.56	-4.1
3,154,824	-		ABCV34_RS14845	0.56	-4.7
3,154,824	-		ABCV34_RS14845	0.56	+0.0
3,154,824	-		ABCV34_RS14845	0.56	-1.4
3,154,835	+		ABCV34_RS14845	0.56	-0.4
3,154,836	-		ABCV34_RS14845	0.56	-5.2
3,155,028	+		ABCV34_RS14845	0.70	-1.9
3,155,028	+		ABCV34_RS14845	0.70	-0.9
3,155,028	+		ABCV34_RS14845	0.70	-1.5
3,155,028	+		ABCV34_RS14845	0.70	-4.6
3,155,028	+		ABCV34_RS14845	0.70	-1.8
3,155,029	-		ABCV34_RS14845	0.70	-0.4
3,155,029	-		ABCV34_RS14845	0.70	-1.4
3,155,029	-		ABCV34_RS14845	0.70	-1.8
3,155,029	-		ABCV34_RS14845	0.70	-2.8
3,155,029	-		ABCV34_RS14845	0.70	+0.5
3,155,029	-		ABCV34_RS14845	0.70	-0.4
3,155,029	-		ABCV34_RS14845	0.70	+0.2
3,155,029	-		ABCV34_RS14845	0.70	-0.3
3,155,029	-		ABCV34_RS14845	0.70	-2.2
3,155,029	-		ABCV34_RS14845	0.70	+2.2
3,155,222	+		ABCV34_RS14845	0.83	-3.3
3,155,223	-		ABCV34_RS14845	0.83	-2.0
3,155,307	+		ABCV34_RS14845	0.89	+0.3
3,155,307	+		ABCV34_RS14845	0.89	-1.1
3,155,307	+		ABCV34_RS14845	0.89	-2.3
3,155,308	-		ABCV34_RS14845	0.89	+0.0
3,155,308	-		ABCV34_RS14845	0.89	-1.4
3,155,308	-		ABCV34_RS14845	0.89	+0.2
3,155,317	+				-4.5
3,155,318	-				+0.2
3,155,472	+				-0.7
3,155,473	-				-1.4
3,155,500	+				-1.7
3,155,500	+				-2.3
3,155,671	+				+1.6
3,155,671	+				+0.7
3,155,671	+				-2.2
3,155,671	+				-3.3
3,155,671	+				-0.5
3,155,671	+				-1.9
3,155,672	-				-2.4
3,155,672	-				-0.8
3,155,672	-				-1.8
3,155,672	-				-1.5
3,155,672	-				-0.9
3,155,672	-				-2.6
3,155,672	-				-3.4
3,155,672	-				+2.3
3,155,675	+				-2.4
3,155,675	+				+1.7
3,155,675	+				-1.7
3,155,675	+				-3.4
3,155,675	+				-1.3
3,155,675	+				-1.7
3,155,675	+				-3.5
3,155,675	+				-2.7
3,155,675	+				-3.3
3,155,675	+				-2.9
3,155,675	+				-3.7
3,155,675	+				-1.7
3,155,676	-				-1.1
3,155,676	-				-4.4
3,155,676	-				+1.1
3,155,676	-				-0.7
3,155,676	-				-1.7
3,155,676	-				-1.4
3,155,676	-				-1.8
3,155,676	-				-1.4
3,155,676	-				+1.0
3,155,676	-				-1.3
3,155,676	-				-2.5
3,155,676	-				+0.5
3,155,676	-				+0.6
3,155,676	-				+0.9
3,155,676	-				-4.9
3,155,676	-				+1.8
3,155,676	-				-1.5
3,155,900	+		ABCV34_RS14850	0.23	-0.2
3,155,900	+		ABCV34_RS14850	0.23	-0.8
3,155,901	-		ABCV34_RS14850	0.23	-1.3
3,155,901	-		ABCV34_RS14850	0.23	-0.1
3,155,901	-		ABCV34_RS14850	0.23	-2.4
3,156,078	+		ABCV34_RS14850	0.41	+1.1
3,156,078	+		ABCV34_RS14850	0.41	-2.3
3,156,078	+		ABCV34_RS14850	0.41	+1.9
3,156,078	+		ABCV34_RS14850	0.41	+1.8
3,156,078	+		ABCV34_RS14850	0.41	-0.5
3,156,078	+		ABCV34_RS14850	0.41	+1.2
3,156,078	+		ABCV34_RS14850	0.41	-3.2
3,156,078	+		ABCV34_RS14850	0.41	-2.9
3,156,078	+		ABCV34_RS14850	0.41	-2.1
3,156,078	+		ABCV34_RS14850	0.41	-1.7
3,156,078	+		ABCV34_RS14850	0.41	+0.4
3,156,078	+		ABCV34_RS14850	0.41	-1.4
3,156,078	+		ABCV34_RS14850	0.41	+0.3
3,156,078	+		ABCV34_RS14850	0.41	-2.6
3,156,078	+		ABCV34_RS14850	0.41	-1.3
3,156,078	+		ABCV34_RS14850	0.41	-1.5
3,156,078	+		ABCV34_RS14850	0.41	-0.9
3,156,079	-		ABCV34_RS14850	0.41	-2.8
3,156,079	-		ABCV34_RS14850	0.41	-1.4
3,156,079	-		ABCV34_RS14850	0.41	+0.7
3,156,079	-		ABCV34_RS14850	0.41	-2.6
3,156,079	-		ABCV34_RS14850	0.41	+0.2
3,156,079	-		ABCV34_RS14850	0.41	-0.1
3,156,079	-		ABCV34_RS14850	0.41	-2.8
3,156,079	-		ABCV34_RS14850	0.41	-1.0
3,156,079	-		ABCV34_RS14850	0.41	-0.4
3,156,079	-		ABCV34_RS14850	0.41	-1.9
3,156,079	-		ABCV34_RS14850	0.41	-2.3
3,156,079	-		ABCV34_RS14850	0.41	-0.4
3,156,079	-		ABCV34_RS14850	0.41	-1.4
3,156,368	+		ABCV34_RS14850	0.70	-1.5
3,156,368	+		ABCV34_RS14850	0.70	-1.4
3,156,368	+		ABCV34_RS14850	0.70	-0.6
3,156,368	+		ABCV34_RS14850	0.70	-3.0
3,156,368	+		ABCV34_RS14850	0.70	+0.3
3,156,368	+		ABCV34_RS14850	0.70	+0.3
3,156,369	-		ABCV34_RS14850	0.70	+0.7
3,156,369	-		ABCV34_RS14850	0.70	-0.5
3,156,605	+				-1.8
3,156,660	+				-1.4
3,156,660	+				-2.2
3,156,660	+				-3.2
3,156,660	+				+0.5
3,156,660	+				-4.1
3,156,660	+				+0.0
3,156,660	+				-3.1
3,156,660	+				-1.7
3,156,660	+				+1.2
3,156,660	+				-1.7
3,156,661	-				-0.7
3,156,661	-				-1.5
3,156,661	-				+1.9
3,156,661	-				+0.3
3,156,661	-				+0.2
3,156,661	-				+1.9
3,156,661	-				-1.4
3,156,661	-				+0.4
3,156,804	+				-1.8
3,156,804	+				-1.3
3,156,804	+				-0.9
3,156,804	+				-0.9
3,156,804	+				-4.1
3,156,804	+				-2.2
3,156,804	+				+1.2
3,156,804	+				-0.9
3,156,805	-				-0.4
3,156,805	-				-0.8
3,156,805	-				-1.2
3,156,805	-				-0.6
3,156,805	-				-2.6
3,156,805	-				-2.8
3,156,806	+				-1.5
3,156,806	+				-2.6
3,156,807	-				-4.1
3,156,807	-				-0.7
3,156,807	-				-2.1
3,156,807	-				-1.5
3,157,486	+				-1.4
3,157,486	+				-1.9
3,157,486	+				-1.4
3,157,506	+				-1.3
3,157,506	+				-2.8
3,157,506	+				-1.7
3,157,506	+				-2.6
3,157,506	+				-1.3
3,157,506	+				+1.4
3,157,506	+				-2.9
3,157,506	+				-3.4
3,157,506	+				-1.2
3,157,506	+				-0.4
3,157,506	+				-2.9
3,157,506	+				-2.0
3,157,506	+				-5.1
3,157,507	-				-1.7
3,157,507	-				+2.7
3,157,507	-				-0.4
3,157,507	-				-2.5
3,157,507	-				-0.7
3,157,507	-				-1.5
3,157,507	-				+0.8
3,157,516	+				+1.5
3,157,516	+				-0.4
3,157,516	+				-0.2
3,157,517	-				-2.0
3,157,517	-				-1.8
3,157,593	+				-0.4
3,157,594	-				-0.9
3,157,594	-				-1.1
3,157,645	+		ABCV34_RS14865	0.14	+0.9
3,157,645	+		ABCV34_RS14865	0.14	-2.8
3,157,645	+		ABCV34_RS14865	0.14	+0.9
3,157,645	+		ABCV34_RS14865	0.14	-2.7
3,157,645	+		ABCV34_RS14865	0.14	-0.9
3,157,645	+		ABCV34_RS14865	0.14	-0.9
3,157,645	+		ABCV34_RS14865	0.14	-2.8
3,157,646	-		ABCV34_RS14865	0.14	-2.9
3,157,646	-		ABCV34_RS14865	0.14	-2.2
3,157,646	-		ABCV34_RS14865	0.14	-1.5
3,157,646	-		ABCV34_RS14865	0.14	+0.3