Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS12255

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,588,942	+		ABCV34_RS12250	0.10	-1.4
2,588,942	+		ABCV34_RS12250	0.10	-0.6
2,588,943	-		ABCV34_RS12250	0.10	-1.3
2,588,943	-		ABCV34_RS12250	0.10	-1.9
2,588,943	-		ABCV34_RS12250	0.10	-0.9
2,588,943	-		ABCV34_RS12250	0.10	+0.5
2,588,943	-		ABCV34_RS12250	0.10	-1.3
2,588,943	-		ABCV34_RS12250	0.10	-1.6
2,588,943	-		ABCV34_RS12250	0.10	-1.7
2,588,967	-		ABCV34_RS12250	0.13	-1.3
2,588,967	-		ABCV34_RS12250	0.13	-1.6
2,589,518	+		ABCV34_RS12250	0.69	-0.3
2,589,518	+		ABCV34_RS12250	0.69	-2.1
2,589,518	+		ABCV34_RS12250	0.69	+0.8
2,589,518	+		ABCV34_RS12250	0.69	-0.5
2,589,518	+		ABCV34_RS12250	0.69	-2.1
2,589,518	+		ABCV34_RS12250	0.69	-3.8
2,589,519	-		ABCV34_RS12250	0.69	-3.7
2,589,519	-		ABCV34_RS12250	0.69	-0.9
2,589,519	-		ABCV34_RS12250	0.69	-0.4
2,589,519	-		ABCV34_RS12250	0.69	-1.9
2,589,519	-		ABCV34_RS12250	0.69	-0.0
2,589,542	+		ABCV34_RS12250	0.72	-0.7
2,589,578	+		ABCV34_RS12250	0.75	+0.5
2,589,578	+		ABCV34_RS12250	0.75	-1.0
2,589,578	+		ABCV34_RS12250	0.75	-1.1
2,589,578	+		ABCV34_RS12250	0.75	+0.1
2,589,578	+		ABCV34_RS12250	0.75	-3.2
2,589,578	+		ABCV34_RS12250	0.75	-3.2
2,589,578	+		ABCV34_RS12250	0.75	-1.2
2,589,578	+		ABCV34_RS12250	0.75	-4.1
2,589,578	+		ABCV34_RS12250	0.75	+1.9
2,589,579	-		ABCV34_RS12250	0.75	-4.4
2,589,579	-		ABCV34_RS12250	0.75	-0.3
2,589,579	-		ABCV34_RS12250	0.75	-3.3
2,589,579	-		ABCV34_RS12250	0.75	-2.2
2,589,579	-		ABCV34_RS12250	0.75	-3.8
2,589,579	-		ABCV34_RS12250	0.75	-1.3
2,589,579	-		ABCV34_RS12250	0.75	-1.3
2,589,579	-		ABCV34_RS12250	0.75	-2.7
2,589,767	+				+0.1
2,589,767	+				-2.6
2,589,767	+				-2.5
2,589,768	-				-1.8
2,589,768	-				-1.1
2,589,768	-				-2.2
2,589,768	-				-1.5
2,589,768	-				-2.0
2,589,768	-				-1.8
2,589,768	-				-0.1
2,589,770	+				-2.6
2,589,770	+				-4.0
2,589,770	+				-3.7
2,589,770	+				-2.5
2,589,770	+				-1.8
2,589,770	+				-0.2
2,589,770	+				-0.2
2,589,770	+				-1.7
2,589,770	+				-3.8
2,589,771	-				-1.7
2,589,771	-				-3.8
2,589,771	-				-1.3
2,589,771	-				-2.0
2,589,771	-				-3.0
2,589,771	-				-1.1
2,589,811	+				-1.5
2,589,811	+				-1.0
2,589,811	+				-2.8
2,589,812	-				-4.0
2,589,812	-				-1.1
2,589,818	+				-0.5
2,589,818	+				-1.3
2,589,818	+				-1.6
2,589,818	+				-1.6
2,589,818	+				-1.9
2,589,818	+				-1.2
2,589,818	+				-3.0
2,589,818	+				-4.4
2,589,819	-				+2.6
2,589,819	-				-3.8
2,589,819	-				-1.1
2,589,819	-				+0.4
2,589,819	-				+0.5
2,589,819	-				+0.5
2,589,819	-				+2.4
2,589,819	-				-0.1
2,589,878	-				-2.9
2,589,891	+				+0.3
2,589,988	+		ABCV34_RS12255	0.19	-0.7
2,589,988	+		ABCV34_RS12255	0.19	-0.8
2,589,988	+		ABCV34_RS12255	0.19	-1.1
2,589,989	-		ABCV34_RS12255	0.19	-1.7
2,589,989	-		ABCV34_RS12255	0.19	+2.1
2,589,989	-		ABCV34_RS12255	0.19	-0.1
2,589,989	-		ABCV34_RS12255	0.19	-1.9
2,589,989	-		ABCV34_RS12255	0.19	-2.0
2,590,131	+		ABCV34_RS12255	0.48	-1.5
2,590,132	-		ABCV34_RS12255	0.48	-0.2
2,590,132	-		ABCV34_RS12255	0.48	+1.0
2,590,132	-		ABCV34_RS12255	0.48	-0.3
2,590,288	+		ABCV34_RS12255	0.80	-0.4
2,590,288	+		ABCV34_RS12255	0.80	-0.8
2,590,288	+		ABCV34_RS12255	0.80	-0.4
2,590,288	+		ABCV34_RS12255	0.80	-3.0
2,590,288	+		ABCV34_RS12255	0.80	-1.8
2,590,288	+		ABCV34_RS12255	0.80	+1.1
2,590,288	+		ABCV34_RS12255	0.80	-0.4
2,590,288	+		ABCV34_RS12255	0.80	-1.9
2,590,288	+		ABCV34_RS12255	0.80	+0.1
2,590,289	-		ABCV34_RS12255	0.81	-5.9
2,590,289	-		ABCV34_RS12255	0.81	-3.7
2,590,289	-		ABCV34_RS12255	0.81	-2.3
2,590,289	-		ABCV34_RS12255	0.81	+1.2
2,590,289	-		ABCV34_RS12255	0.81	-0.4
2,590,289	-		ABCV34_RS12255	0.81	-2.8
2,590,289	-		ABCV34_RS12255	0.81	-2.0
2,590,289	-		ABCV34_RS12255	0.81	-5.8
2,590,289	-		ABCV34_RS12255	0.81	-4.9
2,590,289	-		ABCV34_RS12255	0.81	-0.3
2,590,289	-		ABCV34_RS12255	0.81	-0.9
2,590,289	-		ABCV34_RS12255	0.81	-3.0
2,590,289	-		ABCV34_RS12255	0.81	+0.4
2,590,289	-		ABCV34_RS12255	0.81	-3.3
2,590,289	-		ABCV34_RS12255	0.81	+1.5
2,590,289	-		ABCV34_RS12255	0.81	+0.7
2,590,379	+				-3.4
2,590,379	+				-1.9
2,590,379	+				-1.5
2,590,379	+				-0.9
2,590,379	+				+1.9
2,590,379	+				-2.2
2,590,379	+				-4.2
2,590,379	+				-2.8
2,590,380	-				-4.0
2,590,380	-				-0.1
2,590,380	-				-0.7
2,590,380	-				-2.5
2,590,380	-				-0.8
2,590,380	-				+0.3
2,590,380	-				-1.9
2,590,381	+				-0.9
2,590,381	+				-1.7
2,590,381	+				-3.4
2,590,381	+				+0.2
2,590,381	+				-1.8
2,590,381	+				-1.5
2,590,381	+				-4.8
2,590,381	+				-1.2
2,590,381	+				-1.4
2,590,382	-				-2.9
2,590,382	-				-2.3
2,590,382	-				-1.9
2,590,382	-				+1.9
2,590,382	-				+2.1
2,590,382	-				-2.5
2,590,382	-				-2.8
2,590,382	-				-2.8
2,590,382	-				-1.8
2,590,533	+		ABCV34_RS12260	0.11	-1.5
2,590,533	+		ABCV34_RS12260	0.11	-0.1
2,590,534	-		ABCV34_RS12260	0.11	-3.5
2,590,551	+		ABCV34_RS12260	0.12	+1.0
2,590,552	-		ABCV34_RS12260	0.12	-1.7
2,590,552	-		ABCV34_RS12260	0.12	-0.7
2,590,552	-		ABCV34_RS12260	0.12	-2.7
2,590,552	-		ABCV34_RS12260	0.12	-2.6
2,590,552	-		ABCV34_RS12260	0.12	-1.5
2,590,552	-		ABCV34_RS12260	0.12	-0.2
2,590,953	+		ABCV34_RS12260	0.44	-2.2
2,590,953	+		ABCV34_RS12260	0.44	-2.0
2,590,953	+		ABCV34_RS12260	0.44	-1.3
2,590,953	+		ABCV34_RS12260	0.44	-4.3
2,590,953	+		ABCV34_RS12260	0.44	-2.0
2,590,953	+		ABCV34_RS12260	0.44	-4.5
2,590,953	+		ABCV34_RS12260	0.44	+1.0
2,590,953	+		ABCV34_RS12260	0.44	-0.8
2,590,953	+		ABCV34_RS12260	0.44	-2.1
2,590,953	+		ABCV34_RS12260	0.44	-0.2
2,590,953	+		ABCV34_RS12260	0.44	+0.0
2,590,953	+		ABCV34_RS12260	0.44	-0.5
2,590,954	-		ABCV34_RS12260	0.44	-2.1
2,590,954	-		ABCV34_RS12260	0.44	-2.8
2,590,954	-		ABCV34_RS12260	0.44	-4.4
2,590,954	-		ABCV34_RS12260	0.44	-0.6
2,590,965	+		ABCV34_RS12260	0.45	+0.3
2,590,965	+		ABCV34_RS12260	0.45	-1.9
2,590,965	+		ABCV34_RS12260	0.45	-3.4
2,590,965	+		ABCV34_RS12260	0.45	-0.9
2,590,965	+		ABCV34_RS12260	0.45	-2.0
2,590,965	+		ABCV34_RS12260	0.45	-1.1
2,590,965	+		ABCV34_RS12260	0.45	+1.2
2,590,966	-		ABCV34_RS12260	0.45	-2.7
2,590,966	-		ABCV34_RS12260	0.45	-1.5
2,590,966	-		ABCV34_RS12260	0.45	-1.5
2,590,966	-		ABCV34_RS12260	0.45	+0.1
2,590,966	-		ABCV34_RS12260	0.45	-1.7
2,590,966	-		ABCV34_RS12260	0.45	-3.8
2,590,966	-		ABCV34_RS12260	0.45	-1.0
2,591,071	+		ABCV34_RS12260	0.53	-1.3
2,591,072	-		ABCV34_RS12260	0.53	-4.1
2,591,072	-		ABCV34_RS12260	0.53	-2.9
2,591,082	+		ABCV34_RS12260	0.54	-0.4
2,591,082	+		ABCV34_RS12260	0.54	-1.8
2,591,082	+		ABCV34_RS12260	0.54	-0.6
2,591,082	+		ABCV34_RS12260	0.54	-0.2
2,591,082	+		ABCV34_RS12260	0.54	-0.2
2,591,083	-		ABCV34_RS12260	0.54	-0.8
2,591,083	-		ABCV34_RS12260	0.54	-2.8
2,591,083	-		ABCV34_RS12260	0.54	+0.3
2,591,083	-		ABCV34_RS12260	0.54	+0.4
2,591,083	-		ABCV34_RS12260	0.54	-1.0
2,591,083	-		ABCV34_RS12260	0.54	-4.6
2,591,083	-		ABCV34_RS12260	0.54	-3.2
2,591,130	+		ABCV34_RS12260	0.58	-3.0
2,591,130	+		ABCV34_RS12260	0.58	-0.5
2,591,130	+		ABCV34_RS12260	0.58	+0.4
2,591,130	+		ABCV34_RS12260	0.58	+0.2
2,591,131	-		ABCV34_RS12260	0.58	-0.6
2,591,157	+		ABCV34_RS12260	0.60	-2.1
2,591,157	+		ABCV34_RS12260	0.60	-3.8
2,591,157	+		ABCV34_RS12260	0.60	+1.4
2,591,158	-		ABCV34_RS12260	0.60	-1.1
2,591,158	-		ABCV34_RS12260	0.60	-1.6
2,591,158	-		ABCV34_RS12260	0.60	-2.9