Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS11510

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,432,288	+		ABCV34_RS11505	0.18	+0.2
2,432,517	-		ABCV34_RS11505	0.43	-1.3
2,432,517	-		ABCV34_RS11505	0.43	+0.8
2,432,549	+		ABCV34_RS11505	0.47	-1.8
2,432,549	+		ABCV34_RS11505	0.47	-1.9
2,432,549	+		ABCV34_RS11505	0.47	-1.9
2,432,549	+		ABCV34_RS11505	0.47	-3.0
2,432,549	+		ABCV34_RS11505	0.47	-2.1
2,432,550	-		ABCV34_RS11505	0.47	-2.3
2,432,550	-		ABCV34_RS11505	0.47	-0.9
2,432,633	+		ABCV34_RS11505	0.56	-2.1
2,432,633	+		ABCV34_RS11505	0.56	-1.5
2,432,633	+		ABCV34_RS11505	0.56	+1.8
2,432,633	+		ABCV34_RS11505	0.56	-2.3
2,432,633	+		ABCV34_RS11505	0.56	+0.1
2,432,633	+		ABCV34_RS11505	0.56	-1.9
2,432,633	+		ABCV34_RS11505	0.56	+0.6
2,432,634	-		ABCV34_RS11505	0.56	-1.8
2,432,634	-		ABCV34_RS11505	0.56	-1.5
2,432,634	-		ABCV34_RS11505	0.56	-3.3
2,432,634	-		ABCV34_RS11505	0.56	+2.5
2,432,634	-		ABCV34_RS11505	0.56	-1.7
2,432,634	-		ABCV34_RS11505	0.56	-3.6
2,432,634	-		ABCV34_RS11505	0.56	-0.9
2,432,672	+		ABCV34_RS11505	0.60	-0.4
2,432,672	+		ABCV34_RS11505	0.60	+0.2
2,432,672	+		ABCV34_RS11505	0.60	+0.0
2,432,672	+		ABCV34_RS11505	0.60	+1.0
2,432,673	-		ABCV34_RS11505	0.60	-0.0
2,432,673	-		ABCV34_RS11505	0.60	+1.1
2,432,673	-		ABCV34_RS11505	0.60	-2.4
2,432,673	-		ABCV34_RS11505	0.60	-2.3
2,432,673	-		ABCV34_RS11505	0.60	-2.9
2,432,673	-		ABCV34_RS11505	0.60	-2.9
2,432,673	-		ABCV34_RS11505	0.60	-0.2
2,432,673	-		ABCV34_RS11505	0.60	+0.3
2,432,673	-		ABCV34_RS11505	0.60	-4.0
2,432,673	-		ABCV34_RS11505	0.60	-3.8
2,432,682	+		ABCV34_RS11505	0.61	+0.0
2,432,683	-		ABCV34_RS11505	0.62	-2.2
2,432,768	+		ABCV34_RS11505	0.71	-0.1
2,432,768	+		ABCV34_RS11505	0.71	-1.8
2,432,769	-		ABCV34_RS11505	0.71	-0.3
2,432,804	+		ABCV34_RS11505	0.75	-1.1
2,432,804	+		ABCV34_RS11505	0.75	-4.7
2,432,805	-		ABCV34_RS11505	0.75	-2.5
2,432,819	+		ABCV34_RS11505	0.77	-0.5
2,432,819	+		ABCV34_RS11505	0.77	-5.3
2,432,819	+		ABCV34_RS11505	0.77	-4.0
2,432,819	+		ABCV34_RS11505	0.77	-2.9
2,432,819	+		ABCV34_RS11505	0.77	-4.2
2,432,819	+		ABCV34_RS11505	0.77	-2.2
2,432,819	+		ABCV34_RS11505	0.77	-1.0
2,432,819	+		ABCV34_RS11505	0.77	-1.9
2,432,819	+		ABCV34_RS11505	0.77	-0.6
2,432,819	+		ABCV34_RS11505	0.77	-0.1
2,432,820	-		ABCV34_RS11505	0.77	-2.6
2,432,820	-		ABCV34_RS11505	0.77	+0.7
2,432,820	-		ABCV34_RS11505	0.77	-0.6
2,432,820	-		ABCV34_RS11505	0.77	-1.6
2,432,820	-		ABCV34_RS11505	0.77	-1.3
2,432,820	-		ABCV34_RS11505	0.77	-2.7
2,432,960	+				-0.8
2,432,960	+				-3.3
2,432,960	+				-0.1
2,432,960	+				-1.3
2,432,960	+				-1.0
2,432,960	+				-1.7
2,432,960	+				-0.8
2,432,961	-				-0.5
2,432,961	-				-1.2
2,432,961	-				-1.7
2,432,961	-				-1.6
2,432,961	-				-1.9
2,433,119	+		ABCV34_RS11510	0.11	-3.6
2,433,119	+		ABCV34_RS11510	0.11	-0.9
2,433,119	+		ABCV34_RS11510	0.11	+1.6
2,433,119	+		ABCV34_RS11510	0.11	-2.9
2,433,119	+		ABCV34_RS11510	0.11	-0.3
2,433,119	+		ABCV34_RS11510	0.11	-0.2
2,433,119	+		ABCV34_RS11510	0.11	-1.2
2,433,120	-		ABCV34_RS11510	0.11	-0.7
2,433,120	-		ABCV34_RS11510	0.11	-0.4
2,433,120	-		ABCV34_RS11510	0.11	-2.3
2,433,120	-		ABCV34_RS11510	0.11	-0.5
2,433,120	-		ABCV34_RS11510	0.11	+0.4
2,433,120	-		ABCV34_RS11510	0.11	+0.2
2,433,120	-		ABCV34_RS11510	0.11	-3.8
2,433,120	-		ABCV34_RS11510	0.11	+0.2
2,433,160	+		ABCV34_RS11510	0.16	+0.5
2,433,160	+		ABCV34_RS11510	0.16	-1.8
2,433,161	-		ABCV34_RS11510	0.16	-1.6
2,433,229	+		ABCV34_RS11510	0.24	-2.3
2,433,229	+		ABCV34_RS11510	0.24	-1.9
2,433,229	+		ABCV34_RS11510	0.24	+0.0
2,433,229	+		ABCV34_RS11510	0.24	+0.4
2,433,229	+		ABCV34_RS11510	0.24	+0.1
2,433,229	+		ABCV34_RS11510	0.24	+1.0
2,433,230	-		ABCV34_RS11510	0.24	-0.5
2,433,230	-		ABCV34_RS11510	0.24	-2.4
2,433,230	-		ABCV34_RS11510	0.24	-0.8
2,433,230	-		ABCV34_RS11510	0.24	-2.9
2,433,230	-		ABCV34_RS11510	0.24	-0.2
2,433,230	-		ABCV34_RS11510	0.24	-1.7
2,433,259	+		ABCV34_RS11510	0.27	-0.1
2,433,259	+		ABCV34_RS11510	0.27	-1.0
2,433,260	-		ABCV34_RS11510	0.27	-2.1
2,433,260	-		ABCV34_RS11510	0.27	-2.0
2,433,260	-		ABCV34_RS11510	0.27	-1.5
2,433,260	-		ABCV34_RS11510	0.27	-3.1
2,433,260	-		ABCV34_RS11510	0.27	-1.8
2,433,297	+		ABCV34_RS11510	0.32	-4.3
2,433,297	+		ABCV34_RS11510	0.32	-0.3
2,433,298	-		ABCV34_RS11510	0.32	-0.9
2,433,298	-		ABCV34_RS11510	0.32	-2.9
2,433,298	-		ABCV34_RS11510	0.32	+0.2
2,433,342	+		ABCV34_RS11510	0.37	+1.4
2,433,377	+		ABCV34_RS11510	0.41	-2.3
2,433,377	+		ABCV34_RS11510	0.41	-3.7
2,433,692	+		ABCV34_RS11510	0.77	-0.5
2,433,692	+		ABCV34_RS11510	0.77	-2.8
2,433,692	+		ABCV34_RS11510	0.77	-3.3
2,433,693	-		ABCV34_RS11510	0.78	+1.7
2,433,742	+		ABCV34_RS11510	0.83	-3.2
2,433,743	-		ABCV34_RS11510	0.83	+0.2
2,433,743	-		ABCV34_RS11510	0.83	+2.6
2,433,743	-		ABCV34_RS11510	0.83	+0.2
2,433,754	+		ABCV34_RS11510	0.85	-1.5
2,433,754	+		ABCV34_RS11510	0.85	-2.3
2,433,755	-		ABCV34_RS11510	0.85	-0.3
2,433,755	-		ABCV34_RS11510	0.85	-1.4
2,433,781	+		ABCV34_RS11510	0.88	+0.0
2,433,851	+				-2.0
2,433,851	+				-2.1
2,433,851	+				-3.2
2,433,851	+				-4.8
2,433,851	+				+1.0
2,433,851	+				-2.6
2,433,851	+				-1.9
2,433,851	+				-1.9
2,433,852	-				-0.2
2,433,883	+				-0.3
2,433,883	+				-2.9
2,433,883	+				+3.1
2,433,883	+				-0.7
2,433,884	-				+1.1
2,433,884	-				-1.6
2,433,949	+				-2.7
2,433,949	+				-2.6
2,433,949	+				+1.2
2,433,949	+				-0.5
2,433,950	-				-0.5
2,433,950	-				-4.3
2,433,950	-				-0.1
2,433,998	+				-1.0
2,433,998	+				-4.3
2,433,998	+				-3.9
2,433,998	+				-2.4
2,433,999	-				-1.3
2,433,999	-				-3.4
2,433,999	-				-2.4
2,433,999	-				-4.0
2,433,999	-				-1.6
2,433,999	-				-2.9
2,433,999	-				-5.6
2,434,000	+				-1.1
2,434,001	-				-1.7
2,434,001	-				+0.1
2,434,001	-				-0.8
2,434,036	+		ABCV34_RS11515	0.10	-0.9
2,434,036	+		ABCV34_RS11515	0.10	+1.0
2,434,037	-		ABCV34_RS11515	0.11	-1.6
2,434,037	-		ABCV34_RS11515	0.11	-3.0
2,434,081	+		ABCV34_RS11515	0.13	+1.0
2,434,081	+		ABCV34_RS11515	0.13	-1.1
2,434,081	+		ABCV34_RS11515	0.13	-0.4
2,434,081	+		ABCV34_RS11515	0.13	-2.1
2,434,081	+		ABCV34_RS11515	0.13	-2.1
2,434,081	+		ABCV34_RS11515	0.13	+0.3
2,434,081	+		ABCV34_RS11515	0.13	-0.3
2,434,081	+		ABCV34_RS11515	0.13	-1.5
2,434,081	+		ABCV34_RS11515	0.13	-0.2
2,434,081	+		ABCV34_RS11515	0.13	-2.9
2,434,081	+		ABCV34_RS11515	0.13	-1.1
2,434,081	+		ABCV34_RS11515	0.13	+1.0
2,434,081	+		ABCV34_RS11515	0.13	+1.5
2,434,081	+		ABCV34_RS11515	0.13	-2.5
2,434,081	+		ABCV34_RS11515	0.13	+2.7
2,434,081	+		ABCV34_RS11515	0.13	-2.0
2,434,081	+		ABCV34_RS11515	0.13	-0.7
2,434,081	+		ABCV34_RS11515	0.13	+0.6
2,434,081	+		ABCV34_RS11515	0.13	-2.6
2,434,081	+		ABCV34_RS11515	0.13	-3.7
2,434,082	-		ABCV34_RS11515	0.14	-3.6
2,434,082	-		ABCV34_RS11515	0.14	+1.2
2,434,082	-		ABCV34_RS11515	0.14	+0.7
2,434,082	-		ABCV34_RS11515	0.14	+1.8
2,434,082	-		ABCV34_RS11515	0.14	-1.3
2,434,082	-		ABCV34_RS11515	0.14	-3.4
2,434,082	-		ABCV34_RS11515	0.14	-2.8
2,434,082	-		ABCV34_RS11515	0.14	+1.0
2,434,082	-		ABCV34_RS11515	0.14	+0.1
2,434,082	-		ABCV34_RS11515	0.14	-2.1
2,434,082	-		ABCV34_RS11515	0.14	-0.8
2,434,082	-		ABCV34_RS11515	0.14	-2.9
2,434,082	-		ABCV34_RS11515	0.14	-0.6
2,434,082	-		ABCV34_RS11515	0.14	-3.7
2,434,082	-		ABCV34_RS11515	0.14	-0.4
2,434,082	-		ABCV34_RS11515	0.14	+1.1
2,434,091	+		ABCV34_RS11515	0.14	-1.5
2,434,091	+		ABCV34_RS11515	0.14	-2.0
2,434,092	-		ABCV34_RS11515	0.14	-3.9
2,434,092	-		ABCV34_RS11515	0.14	-0.2
2,434,092	-		ABCV34_RS11515	0.14	-0.7
2,434,092	-		ABCV34_RS11515	0.14	+0.6
2,434,130	-		ABCV34_RS11515	0.17	-0.2
2,434,130	-		ABCV34_RS11515	0.17	-4.1
2,434,342	+		ABCV34_RS11515	0.31	-2.1
2,434,342	+		ABCV34_RS11515	0.31	-2.9
2,434,342	+		ABCV34_RS11515	0.31	-2.1
2,434,343	-		ABCV34_RS11515	0.31	+1.0
2,434,343	-		ABCV34_RS11515	0.31	+0.2
2,434,343	-		ABCV34_RS11515	0.31	+0.7
2,434,343	-		ABCV34_RS11515	0.31	-2.3
2,434,343	-		ABCV34_RS11515	0.31	-1.5
2,434,343	-		ABCV34_RS11515	0.31	-1.6
2,434,343	-		ABCV34_RS11515	0.31	-2.9
2,434,470	-		ABCV34_RS11515	0.40	-1.5
2,434,479	+		ABCV34_RS11515	0.40	-2.0
2,434,479	+		ABCV34_RS11515	0.40	-1.0
2,434,479	+		ABCV34_RS11515	0.40	-1.3
2,434,480	-		ABCV34_RS11515	0.41	-0.7
2,434,645	+		ABCV34_RS11515	0.52	-1.2
2,434,645	+		ABCV34_RS11515	0.52	-1.8
2,434,645	+		ABCV34_RS11515	0.52	-1.9
2,434,645	+		ABCV34_RS11515	0.52	-1.7
2,434,645	+		ABCV34_RS11515	0.52	-2.6
2,434,645	+		ABCV34_RS11515	0.52	-1.9
2,434,645	+		ABCV34_RS11515	0.52	-1.8
2,434,645	+		ABCV34_RS11515	0.52	-0.6
2,434,645	+		ABCV34_RS11515	0.52	-0.4
2,434,645	+		ABCV34_RS11515	0.52	+0.2
2,434,645	+		ABCV34_RS11515	0.52	-1.9
2,434,645	+		ABCV34_RS11515	0.52	-1.8
2,434,646	-		ABCV34_RS11515	0.52	-4.2
2,434,646	-		ABCV34_RS11515	0.52	-1.8
2,434,646	-		ABCV34_RS11515	0.52	-5.0
2,434,646	-		ABCV34_RS11515	0.52	-3.0
2,434,646	-		ABCV34_RS11515	0.52	+1.8
2,434,646	-		ABCV34_RS11515	0.52	-1.0
2,434,646	-		ABCV34_RS11515	0.52	-1.0
2,434,646	-		ABCV34_RS11515	0.52	-0.6
2,434,646	-		ABCV34_RS11515	0.52	-3.8
2,434,646	-		ABCV34_RS11515	0.52	-1.6