Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS11080

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
2,358,202	+		ABCV34_RS11080	0.20	-1.8
2,358,202	+		ABCV34_RS11080	0.20	-1.9
2,358,202	+		ABCV34_RS11080	0.20	-4.2
2,358,202	+		ABCV34_RS11080	0.20	-0.7
2,358,202	+		ABCV34_RS11080	0.20	-2.6
2,358,202	+		ABCV34_RS11080	0.20	-0.5
2,358,202	+		ABCV34_RS11080	0.20	-0.0
2,358,202	+		ABCV34_RS11080	0.20	-4.0
2,358,202	+		ABCV34_RS11080	0.20	-2.6
2,358,202	+		ABCV34_RS11080	0.20	-5.3
2,358,203	-		ABCV34_RS11080	0.20	+2.8
2,358,203	-		ABCV34_RS11080	0.20	-3.6
2,358,203	-		ABCV34_RS11080	0.20	-1.9
2,358,203	-		ABCV34_RS11080	0.20	-0.5
2,358,203	-		ABCV34_RS11080	0.20	+1.5
2,358,203	-		ABCV34_RS11080	0.20	-3.9
2,358,203	-		ABCV34_RS11080	0.20	-0.7
2,358,203	-		ABCV34_RS11080	0.20	-1.5
2,358,203	-		ABCV34_RS11080	0.20	-2.1
2,358,203	-		ABCV34_RS11080	0.20	-3.0
2,358,292	+		ABCV34_RS11080	0.32	-2.0
2,358,293	-		ABCV34_RS11080	0.32	-1.0
2,358,293	-		ABCV34_RS11080	0.32	-4.2
2,358,293	-		ABCV34_RS11080	0.32	+0.2
2,358,293	-		ABCV34_RS11080	0.32	-1.9
2,358,293	-		ABCV34_RS11080	0.32	-0.3
2,358,403	+		ABCV34_RS11080	0.46	-1.8
2,358,404	-		ABCV34_RS11080	0.46	-0.9
2,358,404	-		ABCV34_RS11080	0.46	-0.6
2,358,404	-		ABCV34_RS11080	0.46	-0.9
2,358,404	-		ABCV34_RS11080	0.46	+1.7
2,358,404	-		ABCV34_RS11080	0.46	-2.2
2,358,404	-		ABCV34_RS11080	0.46	-0.4
2,358,562	+		ABCV34_RS11080	0.66	+0.9
2,358,562	+		ABCV34_RS11080	0.66	-0.8
2,358,562	+		ABCV34_RS11080	0.66	-0.0
2,358,562	+		ABCV34_RS11080	0.66	+0.1
2,358,563	-		ABCV34_RS11080	0.66	+0.2
2,358,563	-		ABCV34_RS11080	0.66	+0.8
2,358,563	-		ABCV34_RS11080	0.66	-3.6
2,358,573	+		ABCV34_RS11080	0.67	-0.5
2,358,573	+		ABCV34_RS11080	0.67	+1.9
2,358,573	+		ABCV34_RS11080	0.67	-1.6
2,358,573	+		ABCV34_RS11080	0.67	+0.9
2,358,573	+		ABCV34_RS11080	0.67	-4.0
2,358,573	+		ABCV34_RS11080	0.67	-2.4
2,358,573	+		ABCV34_RS11080	0.67	+1.1
2,358,573	+		ABCV34_RS11080	0.67	+1.3
2,358,574	-		ABCV34_RS11080	0.68	+0.7
2,358,574	-		ABCV34_RS11080	0.68	-0.9
2,358,643	+		ABCV34_RS11080	0.76	-1.0
2,358,643	+		ABCV34_RS11080	0.76	-3.5
2,358,644	-		ABCV34_RS11080	0.77	-4.0
2,358,644	-		ABCV34_RS11080	0.77	-1.2
2,358,644	-		ABCV34_RS11080	0.77	-1.5
2,358,644	-		ABCV34_RS11080	0.77	-0.2
2,358,644	-		ABCV34_RS11080	0.77	-3.8
2,358,661	+		ABCV34_RS11080	0.79	-3.3
2,358,661	+		ABCV34_RS11080	0.79	+0.7
2,358,661	+		ABCV34_RS11080	0.79	+1.8
2,358,662	-		ABCV34_RS11080	0.79	-0.8
2,358,662	-		ABCV34_RS11080	0.79	-0.1
2,358,948	+				-1.4
2,358,948	+				-3.7
2,358,948	+				+2.3
2,358,948	+				-1.8
2,358,948	+				-2.0
2,358,948	+				-3.6
2,358,949	-				+1.1
2,358,949	-				-1.5
2,358,991	+				-0.4
2,358,992	-				-0.9
2,358,992	-				+0.8
2,358,992	-				+0.0
2,358,992	-				-3.8
2,358,992	-				-0.0
2,358,995	+				-1.5
2,359,038	+				-2.1
2,359,038	+				-2.4
2,359,039	-				-2.0
2,359,039	-				+0.2
2,359,048	+				+0.7
2,359,048	+				-1.4
2,359,048	+				-2.4
2,359,048	+				-1.4
2,359,048	+				-0.5
2,359,048	+				-1.0
2,359,048	+				-0.3
2,359,048	+				+0.1
2,359,048	+				-0.1
2,359,049	-				+0.4
2,359,049	-				-1.2
2,359,049	-				-3.0
2,359,049	-				-2.4
2,359,049	-				-3.7
2,359,049	-				-3.5
2,359,049	-				-0.2
2,359,049	-				+1.7
2,359,049	-				-2.4
2,359,152	+				-1.2
2,359,152	+				-1.9
2,359,152	+				-5.3
2,359,152	+				-0.5
2,359,153	-				-1.8
2,359,153	-				-1.6
2,359,424	+		ABCV34_RS11085	0.26	+1.5
2,359,425	-		ABCV34_RS11085	0.26	+0.3
2,359,425	-		ABCV34_RS11085	0.26	+1.1
2,359,425	-		ABCV34_RS11085	0.26	-2.1
2,359,496	+		ABCV34_RS11085	0.31	+0.5
2,359,496	+		ABCV34_RS11085	0.31	-2.5
2,359,496	+		ABCV34_RS11085	0.31	-0.5
2,359,496	+		ABCV34_RS11085	0.31	-1.0
2,359,496	+		ABCV34_RS11085	0.31	+0.0
2,359,496	+		ABCV34_RS11085	0.31	+1.0
2,359,496	+		ABCV34_RS11085	0.31	-2.4
2,359,496	+		ABCV34_RS11085	0.31	+0.2
2,359,496	+		ABCV34_RS11085	0.31	-0.3
2,359,496	+		ABCV34_RS11085	0.31	-2.1
2,359,496	+		ABCV34_RS11085	0.31	-1.9
2,359,496	+		ABCV34_RS11085	0.31	-2.0
2,359,496	+		ABCV34_RS11085	0.31	-1.4
2,359,496	+		ABCV34_RS11085	0.31	-1.5
2,359,496	+		ABCV34_RS11085	0.31	+0.3
2,359,496	+		ABCV34_RS11085	0.31	-0.8
2,359,496	+		ABCV34_RS11085	0.31	+0.6
2,359,497	-		ABCV34_RS11085	0.31	-0.2
2,359,497	-		ABCV34_RS11085	0.31	-4.0
2,359,497	-		ABCV34_RS11085	0.31	-0.8
2,359,497	-		ABCV34_RS11085	0.31	+1.5
2,359,497	-		ABCV34_RS11085	0.31	+0.0
2,359,497	-		ABCV34_RS11085	0.31	-1.6
2,359,497	-		ABCV34_RS11085	0.31	-2.4
2,359,497	-		ABCV34_RS11085	0.31	-0.7
2,359,497	-		ABCV34_RS11085	0.31	-0.1
2,359,497	-		ABCV34_RS11085	0.31	-0.5
2,359,497	-		ABCV34_RS11085	0.31	-4.0
2,359,606	+		ABCV34_RS11085	0.39	-1.2
2,359,606	+		ABCV34_RS11085	0.39	-5.6
2,359,606	+		ABCV34_RS11085	0.39	+0.6
2,359,607	-		ABCV34_RS11085	0.39	-2.5
2,359,607	-		ABCV34_RS11085	0.39	-2.9
2,359,607	-		ABCV34_RS11085	0.39	+0.8
2,359,607	-		ABCV34_RS11085	0.39	-3.1
2,359,607	-		ABCV34_RS11085	0.39	-1.2
2,359,607	-		ABCV34_RS11085	0.39	-3.0
2,359,607	-		ABCV34_RS11085	0.39	-0.3
2,359,754	+		ABCV34_RS11085	0.50	-1.6
2,359,754	+		ABCV34_RS11085	0.50	-2.6
2,359,755	-		ABCV34_RS11085	0.50	-4.6
2,359,755	-		ABCV34_RS11085	0.50	-3.0
2,359,755	-		ABCV34_RS11085	0.50	-5.3
2,359,755	-		ABCV34_RS11085	0.50	-2.8
2,359,755	-		ABCV34_RS11085	0.50	+1.4
2,359,798	+		ABCV34_RS11085	0.53	-2.1