Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS07875

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
1,680,084	+		ABCV34_RS07870	0.47	-2.1
1,680,084	+		ABCV34_RS07870	0.47	+0.4
1,680,155	+		ABCV34_RS07870	0.52	-2.9
1,680,155	+		ABCV34_RS07870	0.52	+1.9
1,680,155	+		ABCV34_RS07870	0.52	+0.1
1,680,155	+		ABCV34_RS07870	0.52	+1.3
1,680,155	+		ABCV34_RS07870	0.52	+0.9
1,680,155	+		ABCV34_RS07870	0.52	-3.1
1,680,155	+		ABCV34_RS07870	0.52	-3.6
1,680,155	+		ABCV34_RS07870	0.52	-1.6
1,680,155	+		ABCV34_RS07870	0.52	+1.1
1,680,156	-		ABCV34_RS07870	0.52	-2.0
1,680,156	-		ABCV34_RS07870	0.52	-1.2
1,680,156	-		ABCV34_RS07870	0.52	-2.7
1,680,156	-		ABCV34_RS07870	0.52	-3.2
1,680,156	-		ABCV34_RS07870	0.52	-3.9
1,680,156	-		ABCV34_RS07870	0.52	-0.8
1,680,156	-		ABCV34_RS07870	0.52	-1.7
1,680,156	-		ABCV34_RS07870	0.52	+0.5
1,680,156	-		ABCV34_RS07870	0.52	-1.4
1,680,156	-		ABCV34_RS07870	0.52	-2.8
1,680,156	-		ABCV34_RS07870	0.52	-4.1
1,680,156	-		ABCV34_RS07870	0.52	-2.1
1,680,156	-		ABCV34_RS07870	0.52	+0.0
1,680,156	-		ABCV34_RS07870	0.52	-3.9
1,680,156	-		ABCV34_RS07870	0.52	-1.1
1,680,156	-		ABCV34_RS07870	0.52	+1.5
1,680,156	-		ABCV34_RS07870	0.52	-0.3
1,680,156	-		ABCV34_RS07870	0.52	-4.4
1,680,171	-		ABCV34_RS07870	0.53	-3.3
1,680,251	+		ABCV34_RS07870	0.58	-2.8
1,680,251	+		ABCV34_RS07870	0.58	-2.7
1,680,251	+		ABCV34_RS07870	0.58	-5.1
1,680,251	+		ABCV34_RS07870	0.58	-2.1
1,680,251	+		ABCV34_RS07870	0.58	-1.7
1,680,251	+		ABCV34_RS07870	0.58	+0.4
1,680,251	+		ABCV34_RS07870	0.58	-3.0
1,680,251	+		ABCV34_RS07870	0.58	-2.5
1,680,251	+		ABCV34_RS07870	0.58	-1.9
1,680,252	-		ABCV34_RS07870	0.58	-2.7
1,680,252	-		ABCV34_RS07870	0.58	-1.9
1,680,252	-		ABCV34_RS07870	0.58	-4.0
1,680,252	-		ABCV34_RS07870	0.58	-3.2
1,680,252	-		ABCV34_RS07870	0.58	-1.5
1,680,252	-		ABCV34_RS07870	0.58	-2.8
1,680,252	-		ABCV34_RS07870	0.58	-3.3
1,680,252	-		ABCV34_RS07870	0.58	-1.0
1,680,252	-		ABCV34_RS07870	0.58	-0.4
1,680,252	-		ABCV34_RS07870	0.58	-3.2
1,680,252	-		ABCV34_RS07870	0.58	-0.7
1,680,253	+		ABCV34_RS07870	0.58	+0.8
1,680,253	+		ABCV34_RS07870	0.58	+0.2
1,680,253	+		ABCV34_RS07870	0.58	+1.2
1,680,253	+		ABCV34_RS07870	0.58	-2.4
1,680,380	+		ABCV34_RS07870	0.67	-0.9
1,680,380	+		ABCV34_RS07870	0.67	-2.5
1,680,380	+		ABCV34_RS07870	0.67	-3.8
1,680,380	+		ABCV34_RS07870	0.67	-2.8
1,680,380	+		ABCV34_RS07870	0.67	+1.2
1,680,380	+		ABCV34_RS07870	0.67	-3.3
1,680,380	+		ABCV34_RS07870	0.67	-2.1
1,680,380	+		ABCV34_RS07870	0.67	+0.9
1,680,380	+		ABCV34_RS07870	0.67	-1.1
1,680,381	-		ABCV34_RS07870	0.67	-1.9
1,680,381	-		ABCV34_RS07870	0.67	-4.3
1,680,381	-		ABCV34_RS07870	0.67	-1.5
1,680,381	-		ABCV34_RS07870	0.67	-2.1
1,680,381	-		ABCV34_RS07870	0.67	+0.1
1,680,381	-		ABCV34_RS07870	0.67	-1.4
1,680,382	+		ABCV34_RS07870	0.67	-3.4
1,680,382	+		ABCV34_RS07870	0.67	+1.3
1,680,382	+		ABCV34_RS07870	0.67	-2.6
1,680,382	+		ABCV34_RS07870	0.67	+0.3
1,680,382	+		ABCV34_RS07870	0.67	+0.4
1,680,382	+		ABCV34_RS07870	0.67	-1.5
1,680,382	+		ABCV34_RS07870	0.67	-4.0
1,680,382	+		ABCV34_RS07870	0.67	-2.8
1,680,383	-		ABCV34_RS07870	0.67	+0.2
1,680,383	-		ABCV34_RS07870	0.67	-2.5
1,680,383	-		ABCV34_RS07870	0.67	-2.2
1,680,383	-		ABCV34_RS07870	0.67	+0.7
1,680,383	-		ABCV34_RS07870	0.67	+0.3
1,680,383	-		ABCV34_RS07870	0.67	-3.3
1,680,383	-		ABCV34_RS07870	0.67	-1.8
1,680,383	-		ABCV34_RS07870	0.67	-2.6
1,680,383	-		ABCV34_RS07870	0.67	-1.8
1,680,386	+		ABCV34_RS07870	0.67	-3.0
1,680,386	+		ABCV34_RS07870	0.67	-0.9
1,680,386	+		ABCV34_RS07870	0.67	+1.7
1,680,386	+		ABCV34_RS07870	0.67	-2.6
1,680,386	+		ABCV34_RS07870	0.67	+0.8
1,680,386	+		ABCV34_RS07870	0.67	-1.9
1,680,386	+		ABCV34_RS07870	0.67	-0.6
1,680,386	+		ABCV34_RS07870	0.67	-2.3
1,680,386	+		ABCV34_RS07870	0.67	-2.1
1,680,386	+		ABCV34_RS07870	0.67	+0.8
1,680,386	+		ABCV34_RS07870	0.67	-2.2
1,680,386	+		ABCV34_RS07870	0.67	+1.1
1,680,386	+		ABCV34_RS07870	0.67	-1.3
1,680,386	+		ABCV34_RS07870	0.67	-2.4
1,680,386	+		ABCV34_RS07870	0.67	-0.4
1,680,386	+		ABCV34_RS07870	0.67	-2.1
1,680,386	+		ABCV34_RS07870	0.67	-1.3
1,680,386	+		ABCV34_RS07870	0.67	-1.6
1,680,386	+		ABCV34_RS07870	0.67	-1.8
1,680,387	-		ABCV34_RS07870	0.67	-3.4
1,680,387	-		ABCV34_RS07870	0.67	-5.0
1,680,387	-		ABCV34_RS07870	0.67	+0.3
1,680,387	-		ABCV34_RS07870	0.67	-5.0
1,680,387	-		ABCV34_RS07870	0.67	-3.7
1,680,387	-		ABCV34_RS07870	0.67	-2.9
1,680,387	-		ABCV34_RS07870	0.67	-2.6
1,680,387	-		ABCV34_RS07870	0.67	-1.9
1,680,387	-		ABCV34_RS07870	0.67	-2.8
1,680,458	+		ABCV34_RS07870	0.72	+1.9
1,680,458	+		ABCV34_RS07870	0.72	-1.5
1,680,458	+		ABCV34_RS07870	0.72	-1.6
1,680,458	+		ABCV34_RS07870	0.72	-0.1
1,680,459	-		ABCV34_RS07870	0.72	-0.5
1,680,459	-		ABCV34_RS07870	0.72	-3.6
1,680,459	-		ABCV34_RS07870	0.72	-2.4
1,680,459	-		ABCV34_RS07870	0.72	-0.4
1,680,459	-		ABCV34_RS07870	0.72	-0.7
1,680,473	+		ABCV34_RS07870	0.73	-2.1
1,680,474	-		ABCV34_RS07870	0.73	+0.2
1,680,474	-		ABCV34_RS07870	0.73	-1.1
1,680,474	-		ABCV34_RS07870	0.73	+0.1
1,680,474	-		ABCV34_RS07870	0.73	-1.1
1,680,488	+		ABCV34_RS07870	0.74	-1.8
1,680,488	+		ABCV34_RS07870	0.74	-2.1
1,680,488	+		ABCV34_RS07870	0.74	-1.6
1,680,488	+		ABCV34_RS07870	0.74	+1.3
1,680,489	-		ABCV34_RS07870	0.74	-2.0
1,680,489	-		ABCV34_RS07870	0.74	-1.5
1,680,489	-		ABCV34_RS07870	0.74	-5.1
1,680,489	-		ABCV34_RS07870	0.74	-4.0
1,680,539	+		ABCV34_RS07870	0.78	-2.1
1,680,540	-		ABCV34_RS07870	0.78	-0.1
1,680,818	+				+0.3
1,680,818	+				-2.4
1,680,819	-				-3.3
1,680,913	+				-0.6
1,680,913	+				-3.8
1,680,913	+				-2.1
1,680,913	+				-1.0
1,680,913	+				-3.4
1,680,913	+				-1.8
1,680,913	+				-1.5
1,680,913	+				-1.5
1,680,913	+				-3.2
1,680,913	+				-5.8
1,680,913	+				-3.3
1,680,914	-				+0.0
1,680,914	-				-0.7
1,680,914	-				-0.9
1,680,914	-				+0.4
1,680,914	-				-0.4
1,680,914	-				+1.2
1,680,914	-				-3.2
1,680,914	-				+1.5
1,680,914	-				-0.6
1,680,914	-				+0.4
1,680,914	-				-1.7
1,680,914	-				-1.9
1,680,914	-				-0.5
1,680,914	-				-0.6
1,680,924	+				-4.7
1,680,924	+				-0.9
1,680,925	-				-0.5
1,680,925	-				+0.7
1,680,925	-				-2.3
1,681,076	+		ABCV34_RS07875	0.18	+1.3
1,681,077	-		ABCV34_RS07875	0.19	-1.9
1,681,144	-		ABCV34_RS07875	0.25	+1.0
1,681,144	-		ABCV34_RS07875	0.25	-3.2
1,681,178	+		ABCV34_RS07875	0.28	-0.1
1,681,178	+		ABCV34_RS07875	0.28	-2.7
1,681,179	-		ABCV34_RS07875	0.29	-2.0
1,681,179	-		ABCV34_RS07875	0.29	-0.9
1,681,458	+		ABCV34_RS07875	0.56	+1.7
1,681,458	+		ABCV34_RS07875	0.56	-1.2
1,681,458	+		ABCV34_RS07875	0.56	-3.6
1,681,458	+		ABCV34_RS07875	0.56	-1.2
1,681,458	+		ABCV34_RS07875	0.56	-2.0
1,681,458	+		ABCV34_RS07875	0.56	-4.5
1,681,458	+		ABCV34_RS07875	0.56	-3.1
1,681,458	+		ABCV34_RS07875	0.56	-0.3
1,681,458	+		ABCV34_RS07875	0.56	+1.2
1,681,458	+		ABCV34_RS07875	0.56	-0.5
1,681,458	+		ABCV34_RS07875	0.56	-0.7
1,681,458	+		ABCV34_RS07875	0.56	-1.2
1,681,458	+		ABCV34_RS07875	0.56	-1.9
1,681,458	+		ABCV34_RS07875	0.56	-1.8
1,681,458	+		ABCV34_RS07875	0.56	-0.8
1,681,458	+		ABCV34_RS07875	0.56	+1.4
1,681,458	+		ABCV34_RS07875	0.56	-2.6
1,681,458	+		ABCV34_RS07875	0.56	-1.1
1,681,458	+		ABCV34_RS07875	0.56	-0.6
1,681,458	+		ABCV34_RS07875	0.56	+0.2
1,681,458	+		ABCV34_RS07875	0.56	-3.0
1,681,458	+		ABCV34_RS07875	0.56	+1.7
1,681,459	-		ABCV34_RS07875	0.56	-0.9
1,681,459	-		ABCV34_RS07875	0.56	-4.6
1,681,459	-		ABCV34_RS07875	0.56	-3.0
1,681,459	-		ABCV34_RS07875	0.56	-0.7
1,681,459	-		ABCV34_RS07875	0.56	-1.4
1,681,459	-		ABCV34_RS07875	0.56	-2.9
1,681,459	-		ABCV34_RS07875	0.56	-2.0
1,681,459	-		ABCV34_RS07875	0.56	-0.4
1,681,459	-		ABCV34_RS07875	0.56	+1.1
1,681,459	-		ABCV34_RS07875	0.56	-2.0
1,681,459	-		ABCV34_RS07875	0.56	+0.8
1,681,459	-		ABCV34_RS07875	0.56	-1.6
1,681,459	-		ABCV34_RS07875	0.56	-0.4
1,681,549	-		ABCV34_RS07875	0.65	-1.3
1,681,557	+		ABCV34_RS07875	0.66	-0.0
1,681,557	+		ABCV34_RS07875	0.66	-2.1
1,681,557	+		ABCV34_RS07875	0.66	+0.4
1,681,557	+		ABCV34_RS07875	0.66	-0.7
1,681,557	+		ABCV34_RS07875	0.66	-2.3
1,681,557	+		ABCV34_RS07875	0.66	-1.9
1,681,557	+		ABCV34_RS07875	0.66	-1.0
1,681,557	+		ABCV34_RS07875	0.66	-0.3
1,681,557	+		ABCV34_RS07875	0.66	-3.0
1,681,557	+		ABCV34_RS07875	0.66	-1.6
1,681,557	+		ABCV34_RS07875	0.66	-0.9
1,681,557	+		ABCV34_RS07875	0.66	-1.5
1,681,557	+		ABCV34_RS07875	0.66	+0.3
1,681,558	-		ABCV34_RS07875	0.66	+0.2
1,681,558	-		ABCV34_RS07875	0.66	-1.3
1,681,558	-		ABCV34_RS07875	0.66	-0.6
1,681,558	-		ABCV34_RS07875	0.66	-0.5
1,681,574	+		ABCV34_RS07875	0.67	-4.1
1,681,574	+		ABCV34_RS07875	0.67	+0.7
1,681,575	-		ABCV34_RS07875	0.67	-2.3
1,681,575	-		ABCV34_RS07875	0.67	-0.1
1,681,752	+		ABCV34_RS07875	0.85	+2.0
1,681,993	+				+2.5
1,681,993	+				-3.0
1,681,993	+				-1.7
1,681,993	+				-0.3
1,681,994	-				-2.2
1,681,994	-				+0.3
1,681,994	-				-2.5
1,681,994	-				-1.4
1,681,994	-				-3.0
1,681,994	-				+0.4
1,681,994	-				-0.0
1,681,994	-				-0.9
1,681,994	-				-1.6
1,681,994	-				-0.7
1,681,994	-				-2.1
1,681,994	-				+1.0
1,682,006	+		ABCV34_RS07880	0.10	-1.3
1,682,006	+		ABCV34_RS07880	0.10	-2.3
1,682,006	+		ABCV34_RS07880	0.10	+0.3
1,682,006	+		ABCV34_RS07880	0.10	-2.1
1,682,038	+		ABCV34_RS07880	0.14	+0.2
1,682,038	+		ABCV34_RS07880	0.14	+1.1
1,682,038	+		ABCV34_RS07880	0.14	-1.6
1,682,038	+		ABCV34_RS07880	0.14	-1.9
1,682,038	+		ABCV34_RS07880	0.14	-1.5
1,682,038	+		ABCV34_RS07880	0.14	-1.6
1,682,038	+		ABCV34_RS07880	0.14	-2.1
1,682,038	+		ABCV34_RS07880	0.14	-1.6
1,682,038	+		ABCV34_RS07880	0.14	+1.8
1,682,038	+		ABCV34_RS07880	0.14	-2.4
1,682,038	+		ABCV34_RS07880	0.14	-1.2
1,682,038	+		ABCV34_RS07880	0.14	-1.6
1,682,039	-		ABCV34_RS07880	0.14	-3.0
1,682,039	-		ABCV34_RS07880	0.14	+0.1
1,682,039	-		ABCV34_RS07880	0.14	+0.6
1,682,039	-		ABCV34_RS07880	0.14	-1.8
1,682,039	-		ABCV34_RS07880	0.14	+2.8
1,682,039	-		ABCV34_RS07880	0.14	-4.2
1,682,039	-		ABCV34_RS07880	0.14	+1.0
1,682,039	-		ABCV34_RS07880	0.14	+1.9
1,682,039	-		ABCV34_RS07880	0.14	-2.1
1,682,039	-		ABCV34_RS07880	0.14	-0.3
1,682,039	-		ABCV34_RS07880	0.14	-1.5
1,682,039	-		ABCV34_RS07880	0.14	-0.2
1,682,039	-		ABCV34_RS07880	0.14	-1.8
1,682,039	-		ABCV34_RS07880	0.14	+0.3
1,682,080	+		ABCV34_RS07880	0.18	-0.2
1,682,080	+		ABCV34_RS07880	0.18	+1.4
1,682,080	+		ABCV34_RS07880	0.18	+2.1
1,682,080	+		ABCV34_RS07880	0.18	+0.3
1,682,080	+		ABCV34_RS07880	0.18	+0.9
1,682,081	-		ABCV34_RS07880	0.18	-0.4
1,682,081	-		ABCV34_RS07880	0.18	-1.5
1,682,081	-		ABCV34_RS07880	0.18	-1.5
1,682,081	-		ABCV34_RS07880	0.18	-1.4
1,682,081	-		ABCV34_RS07880	0.18	-0.3
1,682,081	-		ABCV34_RS07880	0.18	-1.8
1,682,081	-		ABCV34_RS07880	0.18	-1.1
1,682,145	+		ABCV34_RS07880	0.25	-4.4
1,682,145	+		ABCV34_RS07880	0.25	-3.0
1,682,554	+		ABCV34_RS07880	0.69	-0.6
1,682,555	-		ABCV34_RS07880	0.69	-1.4
1,682,555	-		ABCV34_RS07880	0.69	-0.4
1,682,622	+		ABCV34_RS07880	0.77	-3.8
1,682,622	+		ABCV34_RS07880	0.77	+0.7
1,682,622	+		ABCV34_RS07880	0.77	-3.4
1,682,623	-		ABCV34_RS07880	0.77	-1.3
1,682,623	-		ABCV34_RS07880	0.77	+0.4
1,682,623	-		ABCV34_RS07880	0.77	-4.4
1,682,885	+				-2.2
1,682,885	+				-0.9
1,682,885	+				-1.9
1,682,886	-				-2.5
1,682,886	-				-1.2
1,682,886	-				-2.1
1,682,886	-				-2.1
1,682,886	-				-1.9
1,682,886	-				-3.6
1,682,886	-				+0.0
1,682,901	+				-0.5
1,682,901	+				-3.8
1,682,901	+				-2.1
1,682,901	+				-2.0
1,682,901	+				-0.9
1,682,901	+				-2.6
1,682,902	-				-0.3
1,682,902	-				+0.1
1,682,902	-				-2.4
1,682,902	-				-1.2
1,682,902	-				-0.9
1,682,902	-				+1.5
1,682,902	-				-3.4
1,682,902	-				+0.4
1,682,902	-				-4.8