Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06725

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS06720 and ABCV34_RS06725 are separated by 50 nucleotidesABCV34_RS06725 and ABCV34_RS06730 overlap by 1 nucleotides ABCV34_RS06720: ABCV34_RS06720 - ADP-ribosylglycohydrolase family protein, at 1,452,392 to 1,453,474 _RS06720 ABCV34_RS06725: ABCV34_RS06725 - hypothetical protein, at 1,453,525 to 1,454,262 _RS06725 ABCV34_RS06730: ABCV34_RS06730 - glyoxylate/hydroxypyruvate reductase A, at 1,454,262 to 1,455,191 _RS06730 Position (kb) 1453 1454 1455Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1452.527 kb on + strand, within ABCV34_RS06720at 1452.528 kb on - strand, within ABCV34_RS06720at 1452.528 kb on - strand, within ABCV34_RS06720at 1452.593 kb on + strand, within ABCV34_RS06720at 1452.594 kb on - strand, within ABCV34_RS06720at 1452.594 kb on - strand, within ABCV34_RS06720at 1452.724 kb on + strand, within ABCV34_RS06720at 1452.724 kb on + strand, within ABCV34_RS06720at 1452.724 kb on + strand, within ABCV34_RS06720at 1452.724 kb on + strand, within ABCV34_RS06720at 1452.724 kb on + strand, within ABCV34_RS06720at 1452.724 kb on + strand, within ABCV34_RS06720at 1452.725 kb on - strand, within ABCV34_RS06720at 1452.725 kb on - strand, within ABCV34_RS06720at 1452.725 kb on - strand, within ABCV34_RS06720at 1452.870 kb on + strand, within ABCV34_RS06720at 1452.871 kb on - strand, within ABCV34_RS06720at 1452.871 kb on - strand, within ABCV34_RS06720at 1452.908 kb on + strand, within ABCV34_RS06720at 1452.908 kb on + strand, within ABCV34_RS06720at 1452.909 kb on - strand, within ABCV34_RS06720at 1452.909 kb on - strand, within ABCV34_RS06720at 1452.909 kb on - strand, within ABCV34_RS06720at 1452.941 kb on + strand, within ABCV34_RS06720at 1453.137 kb on + strand, within ABCV34_RS06720at 1453.208 kb on + strand, within ABCV34_RS06720at 1453.208 kb on + strand, within ABCV34_RS06720at 1453.208 kb on + strand, within ABCV34_RS06720at 1453.209 kb on - strand, within ABCV34_RS06720at 1453.229 kb on + strand, within ABCV34_RS06720at 1453.250 kb on + strand, within ABCV34_RS06720at 1453.250 kb on + strand, within ABCV34_RS06720at 1453.251 kb on - strand, within ABCV34_RS06720at 1453.253 kb on + strand, within ABCV34_RS06720at 1453.253 kb on + strand, within ABCV34_RS06720at 1453.253 kb on + strand, within ABCV34_RS06720at 1453.253 kb on + strand, within ABCV34_RS06720at 1453.253 kb on + strand, within ABCV34_RS06720at 1453.254 kb on - strand, within ABCV34_RS06720at 1453.254 kb on - strand, within ABCV34_RS06720at 1453.254 kb on - strand, within ABCV34_RS06720at 1453.971 kb on + strand, within ABCV34_RS06725at 1453.972 kb on - strand, within ABCV34_RS06725at 1454.071 kb on - strand, within ABCV34_RS06725at 1454.230 kb on + strandat 1454.230 kb on + strandat 1454.230 kb on + strandat 1454.231 kb on - strandat 1454.231 kb on - strandat 1454.231 kb on - strandat 1454.266 kb on + strandat 1454.266 kb on + strandat 1454.266 kb on + strandat 1454.266 kb on + strandat 1454.266 kb on + strandat 1454.266 kb on + strandat 1454.266 kb on + strandat 1454.267 kb on - strandat 1454.267 kb on - strandat 1454.267 kb on - strandat 1454.529 kb on - strand, within ABCV34_RS06730at 1454.540 kb on - strand, within ABCV34_RS06730at 1454.540 kb on - strand, within ABCV34_RS06730at 1454.540 kb on - strand, within ABCV34_RS06730at 1454.540 kb on - strand, within ABCV34_RS06730at 1454.540 kb on - strand, within ABCV34_RS06730at 1454.540 kb on - strand, within ABCV34_RS06730at 1454.720 kb on - strand, within ABCV34_RS06730at 1454.848 kb on + strand, within ABCV34_RS06730at 1454.849 kb on - strand, within ABCV34_RS06730at 1454.881 kb on + strand, within ABCV34_RS06730at 1454.881 kb on + strand, within ABCV34_RS06730at 1454.881 kb on + strand, within ABCV34_RS06730at 1454.881 kb on + strand, within ABCV34_RS06730at 1454.881 kb on + strand, within ABCV34_RS06730at 1454.882 kb on - strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.893 kb on + strand, within ABCV34_RS06730at 1454.894 kb on - strand, within ABCV34_RS06730at 1454.894 kb on - strand, within ABCV34_RS06730at 1454.894 kb on - strand, within ABCV34_RS06730at 1454.894 kb on - strand, within ABCV34_RS06730at 1454.894 kb on - strand, within ABCV34_RS06730at 1454.894 kb on - strand, within ABCV34_RS06730at 1454.894 kb on - strand, within ABCV34_RS06730at 1455.007 kb on + strand, within ABCV34_RS06730at 1455.007 kb on + strand, within ABCV34_RS06730at 1455.007 kb on + strand, within ABCV34_RS06730at 1455.007 kb on + strand, within ABCV34_RS06730at 1455.007 kb on + strand, within ABCV34_RS06730at 1455.007 kb on + strand, within ABCV34_RS06730at 1455.007 kb on + strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.008 kb on - strand, within ABCV34_RS06730at 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.254 kb on + strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.255 kb on - strandat 1455.259 kb on + strandat 1455.259 kb on + strandat 1455.260 kb on - strandat 1455.260 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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1,452,527 + ABCV34_RS06720 0.12 +1.1
1,452,528 - ABCV34_RS06720 0.13 +1.3
1,452,528 - ABCV34_RS06720 0.13 -2.0
1,452,593 + ABCV34_RS06720 0.19 -1.2
1,452,594 - ABCV34_RS06720 0.19 -2.6
1,452,594 - ABCV34_RS06720 0.19 +0.9
1,452,724 + ABCV34_RS06720 0.31 +0.0
1,452,724 + ABCV34_RS06720 0.31 -2.1
1,452,724 + ABCV34_RS06720 0.31 +0.2
1,452,724 + ABCV34_RS06720 0.31 -1.3
1,452,724 + ABCV34_RS06720 0.31 -1.5
1,452,724 + ABCV34_RS06720 0.31 -3.1
1,452,725 - ABCV34_RS06720 0.31 -0.0
1,452,725 - ABCV34_RS06720 0.31 -3.4
1,452,725 - ABCV34_RS06720 0.31 -2.0
1,452,870 + ABCV34_RS06720 0.44 -3.9
1,452,871 - ABCV34_RS06720 0.44 -1.1
1,452,871 - ABCV34_RS06720 0.44 -1.3
1,452,908 + ABCV34_RS06720 0.48 -1.5
1,452,908 + ABCV34_RS06720 0.48 +0.8
1,452,909 - ABCV34_RS06720 0.48 -3.3
1,452,909 - ABCV34_RS06720 0.48 -2.6
1,452,909 - ABCV34_RS06720 0.48 -1.5
1,452,941 + ABCV34_RS06720 0.51 -0.4
1,453,137 + ABCV34_RS06720 0.69 +0.2
1,453,208 + ABCV34_RS06720 0.75 -0.4
1,453,208 + ABCV34_RS06720 0.75 -2.7
1,453,208 + ABCV34_RS06720 0.75 -1.0
1,453,209 - ABCV34_RS06720 0.75 +0.4
1,453,229 + ABCV34_RS06720 0.77 -2.1
1,453,250 + ABCV34_RS06720 0.79 -2.6
1,453,250 + ABCV34_RS06720 0.79 -3.6
1,453,251 - ABCV34_RS06720 0.79 -1.9
1,453,253 + ABCV34_RS06720 0.80 +0.2
1,453,253 + ABCV34_RS06720 0.80 -2.2
1,453,253 + ABCV34_RS06720 0.80 -0.6
1,453,253 + ABCV34_RS06720 0.80 +1.1
1,453,253 + ABCV34_RS06720 0.80 -0.5
1,453,254 - ABCV34_RS06720 0.80 +0.4
1,453,254 - ABCV34_RS06720 0.80 -1.2
1,453,254 - ABCV34_RS06720 0.80 -2.0
1,453,971 + ABCV34_RS06725 0.60 -1.4
1,453,972 - ABCV34_RS06725 0.61 +3.0
1,454,071 - ABCV34_RS06725 0.74 +0.6
1,454,230 + -2.3
1,454,230 + -0.3
1,454,230 + -3.6
1,454,231 - -2.5
1,454,231 - -0.9
1,454,231 - +1.5
1,454,266 + -2.7
1,454,266 + -3.0
1,454,266 + +0.4
1,454,266 + -0.9
1,454,266 + -3.6
1,454,266 + -2.2
1,454,266 + -1.6
1,454,267 - -0.2
1,454,267 - -4.8
1,454,267 - -0.6
1,454,529 - ABCV34_RS06730 0.29 -1.7
1,454,540 - ABCV34_RS06730 0.30 -3.9
1,454,540 - ABCV34_RS06730 0.30 -0.5
1,454,540 - ABCV34_RS06730 0.30 -1.0
1,454,540 - ABCV34_RS06730 0.30 -3.7
1,454,540 - ABCV34_RS06730 0.30 -1.7
1,454,540 - ABCV34_RS06730 0.30 -3.7
1,454,720 - ABCV34_RS06730 0.49 -1.6
1,454,848 + ABCV34_RS06730 0.63 -1.0
1,454,849 - ABCV34_RS06730 0.63 -2.4
1,454,881 + ABCV34_RS06730 0.67 -0.4
1,454,881 + ABCV34_RS06730 0.67 +0.6
1,454,881 + ABCV34_RS06730 0.67 -2.8
1,454,881 + ABCV34_RS06730 0.67 -3.4
1,454,881 + ABCV34_RS06730 0.67 -1.1
1,454,882 - ABCV34_RS06730 0.67 -3.3
1,454,893 + ABCV34_RS06730 0.68 -3.0
1,454,893 + ABCV34_RS06730 0.68 -2.6
1,454,893 + ABCV34_RS06730 0.68 +1.4
1,454,893 + ABCV34_RS06730 0.68 -1.7
1,454,893 + ABCV34_RS06730 0.68 -2.6
1,454,893 + ABCV34_RS06730 0.68 -2.2
1,454,893 + ABCV34_RS06730 0.68 -0.4
1,454,893 + ABCV34_RS06730 0.68 -2.2
1,454,893 + ABCV34_RS06730 0.68 -0.5
1,454,893 + ABCV34_RS06730 0.68 -3.8
1,454,893 + ABCV34_RS06730 0.68 -1.8
1,454,894 - ABCV34_RS06730 0.68 -2.7
1,454,894 - ABCV34_RS06730 0.68 -2.4
1,454,894 - ABCV34_RS06730 0.68 -1.4
1,454,894 - ABCV34_RS06730 0.68 -2.0
1,454,894 - ABCV34_RS06730 0.68 -2.1
1,454,894 - ABCV34_RS06730 0.68 -0.3
1,454,894 - ABCV34_RS06730 0.68 -2.6
1,455,007 + ABCV34_RS06730 0.80 +0.0
1,455,007 + ABCV34_RS06730 0.80 +0.2
1,455,007 + ABCV34_RS06730 0.80 -1.2
1,455,007 + ABCV34_RS06730 0.80 -1.0
1,455,007 + ABCV34_RS06730 0.80 -2.0
1,455,007 + ABCV34_RS06730 0.80 -1.0
1,455,007 + ABCV34_RS06730 0.80 +0.8
1,455,008 - ABCV34_RS06730 0.80 +1.8
1,455,008 - ABCV34_RS06730 0.80 -1.5
1,455,008 - ABCV34_RS06730 0.80 -1.5
1,455,008 - ABCV34_RS06730 0.80 -4.1
1,455,008 - ABCV34_RS06730 0.80 -2.2
1,455,008 - ABCV34_RS06730 0.80 -0.1
1,455,008 - ABCV34_RS06730 0.80 -1.6
1,455,008 - ABCV34_RS06730 0.80 -2.0
1,455,008 - ABCV34_RS06730 0.80 -4.5
1,455,008 - ABCV34_RS06730 0.80 -2.1
1,455,254 + +0.4
1,455,254 + +0.1
1,455,254 + -2.0
1,455,254 + -2.3
1,455,254 + -3.0
1,455,254 + -1.7
1,455,254 + -3.3
1,455,254 + -3.7
1,455,254 + -3.4
1,455,254 + -1.4
1,455,254 + -1.4
1,455,255 - -2.7
1,455,255 - -2.8
1,455,255 - -1.9
1,455,255 - -3.5
1,455,255 - -1.6
1,455,255 - -0.9
1,455,255 - +2.0
1,455,255 - -3.7
1,455,255 - -1.5
1,455,255 - -1.5
1,455,259 + +1.0
1,455,259 + -0.9
1,455,260 - -0.9
1,455,260 - -0.9

Or see this region's nucleotide sequence