Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS06585

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
1,428,504	-				-3.7
1,428,504	-				-2.3
1,428,504	-				+0.7
1,428,618	+				+1.8
1,428,619	-				+0.1
1,428,630	-				-2.3
1,428,639	+				-3.9
1,428,640	-				-3.5
1,428,824	-		ABCV34_RS06580	0.24	-2.0
1,428,824	-		ABCV34_RS06580	0.24	-3.0
1,428,853	+		ABCV34_RS06580	0.28	-1.4
1,428,854	-		ABCV34_RS06580	0.28	-1.9
1,428,951	+		ABCV34_RS06580	0.41	-2.2
1,428,951	+		ABCV34_RS06580	0.41	-0.6
1,428,951	+		ABCV34_RS06580	0.41	-1.5
1,428,951	+		ABCV34_RS06580	0.41	-0.5
1,428,952	-		ABCV34_RS06580	0.41	-2.6
1,428,952	-		ABCV34_RS06580	0.41	-1.7
1,428,952	-		ABCV34_RS06580	0.41	-3.5
1,429,161	+		ABCV34_RS06580	0.68	-1.6
1,429,161	+		ABCV34_RS06580	0.68	-3.0
1,429,161	+		ABCV34_RS06580	0.68	-2.7
1,429,161	+		ABCV34_RS06580	0.68	-2.9
1,429,161	+		ABCV34_RS06580	0.68	-0.7
1,429,161	+		ABCV34_RS06580	0.68	-2.4
1,429,162	-		ABCV34_RS06580	0.68	-1.9
1,429,162	-		ABCV34_RS06580	0.68	-1.7
1,429,302	+		ABCV34_RS06580	0.87	-2.0
1,429,302	+		ABCV34_RS06580	0.87	-2.4
1,429,302	+		ABCV34_RS06580	0.87	-2.0
1,429,303	-		ABCV34_RS06580	0.87	-3.5
1,429,303	-		ABCV34_RS06580	0.87	-0.6
1,429,303	-		ABCV34_RS06580	0.87	+1.3
1,429,305	+		ABCV34_RS06580	0.87	-1.9
1,429,305	+		ABCV34_RS06580	0.87	-1.6
1,429,305	+		ABCV34_RS06580	0.87	-1.5
1,429,305	+		ABCV34_RS06580	0.87	+1.5
1,429,305	+		ABCV34_RS06580	0.87	+1.4
1,429,305	+		ABCV34_RS06580	0.87	-3.9
1,429,305	+		ABCV34_RS06580	0.87	+0.8
1,429,305	+		ABCV34_RS06580	0.87	-5.3
1,429,305	+		ABCV34_RS06580	0.87	-2.0
1,429,305	+		ABCV34_RS06580	0.87	+2.0
1,429,305	+		ABCV34_RS06580	0.87	-2.0
1,429,305	+		ABCV34_RS06580	0.87	-0.9
1,429,306	-		ABCV34_RS06580	0.87	-2.6
1,429,306	-		ABCV34_RS06580	0.87	-2.7
1,429,306	-		ABCV34_RS06580	0.87	-3.4
1,429,306	-		ABCV34_RS06580	0.87	+3.2
1,429,578	-		ABCV34_RS06585	0.50	+1.7
1,429,706	+		ABCV34_RS06585	0.86	-0.8
1,429,707	-		ABCV34_RS06585	0.86	+2.4
1,429,707	-		ABCV34_RS06585	0.86	-1.9
1,429,746	+				+0.3
1,429,746	+				-1.7
1,429,746	+				-3.0
1,429,746	+				+0.1
1,429,746	+				-0.6
1,429,746	+				-3.7
1,429,746	+				-2.0
1,429,746	+				+0.2
1,429,746	+				-2.0
1,429,746	+				+0.3
1,429,746	+				-1.0
1,429,746	+				-4.0
1,429,746	+				-2.0
1,429,746	+				-3.5
1,429,746	+				-1.0
1,429,747	-				-1.6
1,429,747	-				-2.2
1,429,747	-				-0.8
1,429,747	-				-3.6
1,429,747	-				-1.4
1,429,747	-				+0.8
1,429,747	-				-5.2
1,429,747	-				-4.1
1,429,747	-				-1.7
1,429,747	-				-1.4
1,429,747	-				-2.5
1,429,747	-				-0.5
1,429,747	-				-3.2
1,429,747	-				-1.6
1,429,748	+				-3.1
1,429,748	+				-0.2
1,429,748	+				-0.3
1,429,748	+				-0.1
1,429,748	+				-3.1
1,429,748	+				-4.2
1,429,748	+				-2.5
1,429,748	+				-2.1
1,430,063	+		ABCV34_RS06595	0.28	-0.3
1,430,064	-		ABCV34_RS06595	0.29	-3.0
1,430,196	+		ABCV34_RS06595	0.88	+0.2
1,430,217	+				-0.4
1,430,217	+				+0.1
1,430,217	+				+1.0
1,430,217	+				-2.0
1,430,217	+				+1.0
1,430,217	+				+1.0
1,430,217	+				-1.6
1,430,218	-				-1.7
1,430,218	-				+0.1
1,430,348	-		ABCV34_RS06600	0.54	-5.1
1,430,348	-		ABCV34_RS06600	0.54	+0.6
1,430,447	+				-4.5
1,430,623	+				-1.4
1,430,623	+				-1.5
1,430,623	+				+1.1
1,430,623	+				-0.7
1,430,623	+				-0.5
1,430,623	+				-0.8
1,430,623	+				+1.1
1,430,623	+				+0.6
1,430,623	+				-2.6
1,430,623	+				+1.4
1,430,623	+				-2.4
1,430,623	+				-0.8
1,430,623	+				-0.4
1,430,623	+				-0.9
1,430,623	+				+0.5
1,430,623	+				-1.5
1,430,623	+				-3.5
1,430,623	+				+0.2
1,430,623	+				+0.4
1,430,623	+				-2.3
1,430,623	+				-2.4
1,430,623	+				-0.9
1,430,623	+				-0.5
1,430,623	+				-1.2
1,430,623	+				-1.9
1,430,623	+				-0.2
1,430,624	-				-1.6
1,430,624	-				-0.7
1,430,624	-				-2.0
1,430,624	-				-1.5
1,430,624	-				-1.2
1,430,624	-				+0.2
1,430,624	-				-3.1
1,430,624	-				-1.4
1,430,624	-				-0.1
1,430,624	-				-1.5
1,430,624	-				-3.1
1,430,624	-				-3.4
1,430,624	-				-3.7
1,430,624	-				-1.4
1,430,624	-				-0.6
1,430,624	-				+0.8
1,430,624	-				-3.5
1,430,624	-				-0.5
1,430,624	-				-0.6
1,430,624	-				-1.7
1,430,624	-				-0.9
1,430,624	-				-1.2
1,430,624	-				-3.4
1,430,624	-				-2.3
1,430,627	+				-2.0
1,430,627	+				+1.6
1,430,627	+				-2.0
1,430,627	+				-1.8
1,430,627	+				-2.1
1,430,627	+				-2.7
1,430,627	+				-1.5
1,430,627	+				-1.9
1,430,627	+				+0.2
1,430,627	+				-0.4
1,430,627	+				+0.4
1,430,627	+				-2.6
1,430,628	-				-3.9
1,430,628	-				-0.1
1,430,628	-				-4.0
1,430,628	-				-1.6
1,430,628	-				-0.8
1,430,628	-				-2.5
1,430,628	-				-2.6
1,430,628	-				+0.6
1,430,628	-				-1.2
1,430,628	-				+0.4
1,430,628	-				-2.9
1,430,628	-				+0.4
1,430,628	-				-4.1
1,430,628	-				-1.9
1,430,628	-				-2.0
1,430,628	-				-0.7
1,430,628	-				-1.0
1,430,655	+				+1.0
1,430,656	-				-0.1
1,430,656	-				-0.7
1,430,656	-				+0.4
1,430,656	-				-4.1
1,430,656	-				-2.0
1,430,656	-				+0.6
1,430,656	-				-0.8
1,430,656	-				-0.3
1,430,701	+				-3.6
1,430,702	-				-0.1
1,430,702	-				-0.7
1,430,702	-				-2.4
1,430,702	-				-4.0
1,430,702	-				-3.5