Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS05890

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABCV34_RS05885 and ABCV34_RS05890 are separated by 64 nucleotidesABCV34_RS05890 and ABCV34_RS05895 are separated by 77 nucleotides ABCV34_RS05885: ABCV34_RS05885 - cytosine permease, at 1,276,923 to 1,278,266 _RS05885 ABCV34_RS05890: ABCV34_RS05890 - phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating), at 1,278,331 to 1,279,350 _RS05890 ABCV34_RS05895: ABCV34_RS05895 - nitric-oxide reductase large subunit, at 1,279,428 to 1,281,704 _RS05895 Position (kb) 1278 1279 1280Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3at 1277.404 kb on + strand, within ABCV34_RS05885at 1277.554 kb on + strand, within ABCV34_RS05885at 1277.594 kb on + strand, within ABCV34_RS05885at 1277.594 kb on + strand, within ABCV34_RS05885at 1277.594 kb on + strand, within ABCV34_RS05885at 1277.594 kb on + strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.595 kb on - strand, within ABCV34_RS05885at 1277.659 kb on - strand, within ABCV34_RS05885at 1277.659 kb on - strand, within ABCV34_RS05885at 1277.713 kb on - strand, within ABCV34_RS05885at 1277.736 kb on + strand, within ABCV34_RS05885at 1277.737 kb on - strand, within ABCV34_RS05885at 1277.862 kb on + strand, within ABCV34_RS05885at 1277.862 kb on + strand, within ABCV34_RS05885at 1277.862 kb on + strand, within ABCV34_RS05885at 1277.863 kb on - strand, within ABCV34_RS05885at 1277.874 kb on + strand, within ABCV34_RS05885at 1277.874 kb on + strand, within ABCV34_RS05885at 1277.874 kb on + strand, within ABCV34_RS05885at 1277.874 kb on + strand, within ABCV34_RS05885at 1277.875 kb on - strand, within ABCV34_RS05885at 1278.141 kb on + strandat 1278.172 kb on - strandat 1278.305 kb on + strandat 1278.305 kb on + strandat 1278.305 kb on + strandat 1278.305 kb on + strandat 1278.305 kb on + strandat 1278.305 kb on + strandat 1278.306 kb on - strandat 1278.306 kb on - strandat 1278.306 kb on - strandat 1278.306 kb on - strandat 1278.306 kb on - strandat 1278.306 kb on - strandat 1278.312 kb on + strandat 1278.312 kb on + strandat 1278.312 kb on + strandat 1278.312 kb on + strandat 1278.313 kb on - strandat 1278.313 kb on - strandat 1278.313 kb on - strandat 1278.313 kb on - strandat 1278.313 kb on - strandat 1278.313 kb on - strandat 1278.609 kb on + strand, within ABCV34_RS05890at 1278.610 kb on - strand, within ABCV34_RS05890at 1278.610 kb on - strand, within ABCV34_RS05890at 1278.619 kb on + strand, within ABCV34_RS05890at 1278.670 kb on + strand, within ABCV34_RS05890at 1278.670 kb on + strand, within ABCV34_RS05890at 1278.670 kb on + strand, within ABCV34_RS05890at 1278.671 kb on - strand, within ABCV34_RS05890at 1278.671 kb on - strand, within ABCV34_RS05890at 1278.718 kb on + strand, within ABCV34_RS05890at 1278.931 kb on + strand, within ABCV34_RS05890at 1278.931 kb on + strand, within ABCV34_RS05890at 1278.932 kb on - strand, within ABCV34_RS05890at 1279.027 kb on + strand, within ABCV34_RS05890at 1279.027 kb on + strand, within ABCV34_RS05890at 1279.027 kb on + strand, within ABCV34_RS05890at 1279.028 kb on - strand, within ABCV34_RS05890at 1279.033 kb on + strand, within ABCV34_RS05890at 1279.033 kb on + strand, within ABCV34_RS05890at 1279.033 kb on + strand, within ABCV34_RS05890at 1279.034 kb on - strand, within ABCV34_RS05890at 1279.034 kb on - strand, within ABCV34_RS05890at 1279.243 kb on + strand, within ABCV34_RS05890at 1279.243 kb on + strand, within ABCV34_RS05890at 1279.243 kb on + strand, within ABCV34_RS05890at 1279.243 kb on + strand, within ABCV34_RS05890at 1279.243 kb on + strand, within ABCV34_RS05890at 1279.244 kb on - strand, within ABCV34_RS05890at 1279.244 kb on - strand, within ABCV34_RS05890at 1279.348 kb on + strandat 1279.636 kb on + strandat 1279.637 kb on - strandat 1279.637 kb on - strandat 1279.637 kb on - strandat 1279.756 kb on + strand, within ABCV34_RS05895at 1279.798 kb on + strand, within ABCV34_RS05895at 1279.798 kb on + strand, within ABCV34_RS05895at 1279.798 kb on + strand, within ABCV34_RS05895at 1279.798 kb on + strand, within ABCV34_RS05895at 1279.798 kb on + strand, within ABCV34_RS05895at 1279.798 kb on + strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.799 kb on - strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.855 kb on + strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.856 kb on - strand, within ABCV34_RS05895at 1279.858 kb on + strand, within ABCV34_RS05895at 1279.858 kb on + strand, within ABCV34_RS05895at 1279.858 kb on + strand, within ABCV34_RS05895at 1279.858 kb on + strand, within ABCV34_RS05895at 1279.858 kb on + strand, within ABCV34_RS05895at 1279.859 kb on - strand, within ABCV34_RS05895at 1279.859 kb on - strand, within ABCV34_RS05895at 1279.859 kb on - strand, within ABCV34_RS05895at 1279.859 kb on - strand, within ABCV34_RS05895at 1279.859 kb on - strand, within ABCV34_RS05895at 1280.008 kb on + strand, within ABCV34_RS05895at 1280.009 kb on - strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.092 kb on + strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.093 kb on - strand, within ABCV34_RS05895at 1280.275 kb on + strand, within ABCV34_RS05895at 1280.276 kb on - strand, within ABCV34_RS05895at 1280.276 kb on - strand, within ABCV34_RS05895at 1280.276 kb on - strand, within ABCV34_RS05895at 1280.309 kb on - strand, within ABCV34_RS05895at 1280.309 kb on - strand, within ABCV34_RS05895at 1280.309 kb on - strand, within ABCV34_RS05895at 1280.326 kb on + strand, within ABCV34_RS05895at 1280.326 kb on + strand, within ABCV34_RS05895at 1280.326 kb on + strand, within ABCV34_RS05895at 1280.326 kb on + strand, within ABCV34_RS05895at 1280.326 kb on + strand, within ABCV34_RS05895at 1280.326 kb on + strand, within ABCV34_RS05895at 1280.327 kb on - strand, within ABCV34_RS05895at 1280.327 kb on - strand, within ABCV34_RS05895at 1280.327 kb on - strand, within ABCV34_RS05895at 1280.327 kb on - strand, within ABCV34_RS05895at 1280.327 kb on - strand, within ABCV34_RS05895at 1280.327 kb on - strand, within ABCV34_RS05895

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Per-strain Table

Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
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1,277,404 + ABCV34_RS05885 0.36 -2.6
1,277,554 + ABCV34_RS05885 0.47 +3.6
1,277,594 + ABCV34_RS05885 0.50 -0.8
1,277,594 + ABCV34_RS05885 0.50 -1.1
1,277,594 + ABCV34_RS05885 0.50 -1.3
1,277,594 + ABCV34_RS05885 0.50 -3.8
1,277,595 - ABCV34_RS05885 0.50 +1.7
1,277,595 - ABCV34_RS05885 0.50 -2.9
1,277,595 - ABCV34_RS05885 0.50 -3.8
1,277,595 - ABCV34_RS05885 0.50 +0.4
1,277,595 - ABCV34_RS05885 0.50 -2.4
1,277,595 - ABCV34_RS05885 0.50 -4.6
1,277,595 - ABCV34_RS05885 0.50 -2.8
1,277,595 - ABCV34_RS05885 0.50 -1.2
1,277,659 - ABCV34_RS05885 0.55 -2.0
1,277,659 - ABCV34_RS05885 0.55 -0.4
1,277,713 - ABCV34_RS05885 0.59 -3.4
1,277,736 + ABCV34_RS05885 0.60 -0.1
1,277,737 - ABCV34_RS05885 0.61 +0.5
1,277,862 + ABCV34_RS05885 0.70 -1.4
1,277,862 + ABCV34_RS05885 0.70 +0.4
1,277,862 + ABCV34_RS05885 0.70 -0.7
1,277,863 - ABCV34_RS05885 0.70 -2.4
1,277,874 + ABCV34_RS05885 0.71 -1.0
1,277,874 + ABCV34_RS05885 0.71 -2.0
1,277,874 + ABCV34_RS05885 0.71 -2.9
1,277,874 + ABCV34_RS05885 0.71 -0.7
1,277,875 - ABCV34_RS05885 0.71 -0.4
1,278,141 + +2.3
1,278,172 - -2.0
1,278,305 + -1.0
1,278,305 + -2.7
1,278,305 + +0.2
1,278,305 + -2.6
1,278,305 + +0.0
1,278,305 + -2.4
1,278,306 - -3.6
1,278,306 - +0.9
1,278,306 - -4.3
1,278,306 - -2.5
1,278,306 - -1.4
1,278,306 - -0.8
1,278,312 + -1.8
1,278,312 + -2.9
1,278,312 + -3.4
1,278,312 + -0.7
1,278,313 - -0.3
1,278,313 - +0.9
1,278,313 - -3.5
1,278,313 - +1.4
1,278,313 - -1.3
1,278,313 - -0.4
1,278,609 + ABCV34_RS05890 0.27 +0.0
1,278,610 - ABCV34_RS05890 0.27 -2.8
1,278,610 - ABCV34_RS05890 0.27 +0.1
1,278,619 + ABCV34_RS05890 0.28 -0.1
1,278,670 + ABCV34_RS05890 0.33 +0.6
1,278,670 + ABCV34_RS05890 0.33 -3.8
1,278,670 + ABCV34_RS05890 0.33 +2.1
1,278,671 - ABCV34_RS05890 0.33 +1.2
1,278,671 - ABCV34_RS05890 0.33 -3.0
1,278,718 + ABCV34_RS05890 0.38 -2.2
1,278,931 + ABCV34_RS05890 0.59 -1.8
1,278,931 + ABCV34_RS05890 0.59 +1.3
1,278,932 - ABCV34_RS05890 0.59 +0.3
1,279,027 + ABCV34_RS05890 0.68 -2.6
1,279,027 + ABCV34_RS05890 0.68 -3.4
1,279,027 + ABCV34_RS05890 0.68 -3.9
1,279,028 - ABCV34_RS05890 0.68 -1.8
1,279,033 + ABCV34_RS05890 0.69 -1.2
1,279,033 + ABCV34_RS05890 0.69 -2.3
1,279,033 + ABCV34_RS05890 0.69 +2.1
1,279,034 - ABCV34_RS05890 0.69 -3.6
1,279,034 - ABCV34_RS05890 0.69 +1.2
1,279,243 + ABCV34_RS05890 0.89 -1.9
1,279,243 + ABCV34_RS05890 0.89 -0.6
1,279,243 + ABCV34_RS05890 0.89 -3.6
1,279,243 + ABCV34_RS05890 0.89 -0.6
1,279,243 + ABCV34_RS05890 0.89 -2.5
1,279,244 - ABCV34_RS05890 0.90 +0.8
1,279,244 - ABCV34_RS05890 0.90 -3.6
1,279,348 + -1.0
1,279,636 + -3.0
1,279,637 - -1.1
1,279,637 - -4.6
1,279,637 - +1.5
1,279,756 + ABCV34_RS05895 0.14 -1.4
1,279,798 + ABCV34_RS05895 0.16 -0.8
1,279,798 + ABCV34_RS05895 0.16 -2.4
1,279,798 + ABCV34_RS05895 0.16 -2.9
1,279,798 + ABCV34_RS05895 0.16 +0.5
1,279,798 + ABCV34_RS05895 0.16 -0.4
1,279,798 + ABCV34_RS05895 0.16 -2.0
1,279,799 - ABCV34_RS05895 0.16 +0.0
1,279,799 - ABCV34_RS05895 0.16 -2.5
1,279,799 - ABCV34_RS05895 0.16 -0.9
1,279,799 - ABCV34_RS05895 0.16 -0.7
1,279,799 - ABCV34_RS05895 0.16 -1.7
1,279,799 - ABCV34_RS05895 0.16 -3.3
1,279,799 - ABCV34_RS05895 0.16 -0.4
1,279,799 - ABCV34_RS05895 0.16 -1.9
1,279,799 - ABCV34_RS05895 0.16 -1.6
1,279,855 + ABCV34_RS05895 0.19 -1.6
1,279,855 + ABCV34_RS05895 0.19 +1.1
1,279,855 + ABCV34_RS05895 0.19 -3.2
1,279,855 + ABCV34_RS05895 0.19 -1.0
1,279,855 + ABCV34_RS05895 0.19 -4.6
1,279,855 + ABCV34_RS05895 0.19 +1.5
1,279,855 + ABCV34_RS05895 0.19 +0.0
1,279,855 + ABCV34_RS05895 0.19 +1.8
1,279,855 + ABCV34_RS05895 0.19 +2.7
1,279,855 + ABCV34_RS05895 0.19 -1.4
1,279,856 - ABCV34_RS05895 0.19 -0.6
1,279,856 - ABCV34_RS05895 0.19 -3.8
1,279,856 - ABCV34_RS05895 0.19 -1.6
1,279,856 - ABCV34_RS05895 0.19 -1.3
1,279,856 - ABCV34_RS05895 0.19 -0.9
1,279,856 - ABCV34_RS05895 0.19 -1.6
1,279,856 - ABCV34_RS05895 0.19 +2.0
1,279,856 - ABCV34_RS05895 0.19 -1.4
1,279,856 - ABCV34_RS05895 0.19 -1.0
1,279,856 - ABCV34_RS05895 0.19 -2.0
1,279,856 - ABCV34_RS05895 0.19 -2.8
1,279,858 + ABCV34_RS05895 0.19 -3.2
1,279,858 + ABCV34_RS05895 0.19 -1.4
1,279,858 + ABCV34_RS05895 0.19 -3.4
1,279,858 + ABCV34_RS05895 0.19 -0.4
1,279,858 + ABCV34_RS05895 0.19 -4.0
1,279,859 - ABCV34_RS05895 0.19 -1.5
1,279,859 - ABCV34_RS05895 0.19 -2.1
1,279,859 - ABCV34_RS05895 0.19 -1.2
1,279,859 - ABCV34_RS05895 0.19 -1.9
1,279,859 - ABCV34_RS05895 0.19 -1.9
1,280,008 + ABCV34_RS05895 0.25 -1.2
1,280,009 - ABCV34_RS05895 0.26 +2.4
1,280,092 + ABCV34_RS05895 0.29 -1.2
1,280,092 + ABCV34_RS05895 0.29 -2.8
1,280,092 + ABCV34_RS05895 0.29 -0.6
1,280,092 + ABCV34_RS05895 0.29 +2.2
1,280,092 + ABCV34_RS05895 0.29 -4.5
1,280,092 + ABCV34_RS05895 0.29 -1.0
1,280,092 + ABCV34_RS05895 0.29 -0.1
1,280,092 + ABCV34_RS05895 0.29 -3.8
1,280,092 + ABCV34_RS05895 0.29 -2.4
1,280,092 + ABCV34_RS05895 0.29 +0.0
1,280,093 - ABCV34_RS05895 0.29 -4.6
1,280,093 - ABCV34_RS05895 0.29 +0.2
1,280,093 - ABCV34_RS05895 0.29 -1.1
1,280,093 - ABCV34_RS05895 0.29 -3.5
1,280,093 - ABCV34_RS05895 0.29 +0.7
1,280,093 - ABCV34_RS05895 0.29 -1.6
1,280,093 - ABCV34_RS05895 0.29 -1.9
1,280,093 - ABCV34_RS05895 0.29 -0.4
1,280,093 - ABCV34_RS05895 0.29 -2.4
1,280,275 + ABCV34_RS05895 0.37 -1.8
1,280,276 - ABCV34_RS05895 0.37 -3.2
1,280,276 - ABCV34_RS05895 0.37 -0.3
1,280,276 - ABCV34_RS05895 0.37 -2.8
1,280,309 - ABCV34_RS05895 0.39 -4.9
1,280,309 - ABCV34_RS05895 0.39 +0.1
1,280,309 - ABCV34_RS05895 0.39 -5.3
1,280,326 + ABCV34_RS05895 0.39 -1.1
1,280,326 + ABCV34_RS05895 0.39 -1.2
1,280,326 + ABCV34_RS05895 0.39 -1.0
1,280,326 + ABCV34_RS05895 0.39 -1.8
1,280,326 + ABCV34_RS05895 0.39 -1.8
1,280,326 + ABCV34_RS05895 0.39 +0.5
1,280,327 - ABCV34_RS05895 0.39 -0.4
1,280,327 - ABCV34_RS05895 0.39 -0.7
1,280,327 - ABCV34_RS05895 0.39 +2.0
1,280,327 - ABCV34_RS05895 0.39 -0.7
1,280,327 - ABCV34_RS05895 0.39 -1.9
1,280,327 - ABCV34_RS05895 0.39 -1.5

Or see this region's nucleotide sequence