Strain Fitness in Castellaniella sp019104865 MT123 around ABCV34_RS04825

Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
1,040,643	+		ABCV34_RS04820	0.27	-3.4
1,040,643	+		ABCV34_RS04820	0.27	-2.2
1,040,643	+		ABCV34_RS04820	0.27	+0.2
1,040,643	+		ABCV34_RS04820	0.27	-2.5
1,040,643	+		ABCV34_RS04820	0.27	-3.3
1,040,643	+		ABCV34_RS04820	0.27	-1.4
1,040,643	+		ABCV34_RS04820	0.27	-4.4
1,040,643	+		ABCV34_RS04820	0.27	-1.6
1,040,643	+		ABCV34_RS04820	0.27	-1.1
1,040,643	+		ABCV34_RS04820	0.27	-1.2
1,040,643	+		ABCV34_RS04820	0.27	-2.9
1,040,643	+		ABCV34_RS04820	0.27	+0.9
1,040,643	+		ABCV34_RS04820	0.27	-4.4
1,040,643	+		ABCV34_RS04820	0.27	-1.8
1,040,644	-		ABCV34_RS04820	0.27	-2.8
1,040,644	-		ABCV34_RS04820	0.27	-3.7
1,040,644	-		ABCV34_RS04820	0.27	-2.2
1,040,644	-		ABCV34_RS04820	0.27	-1.2
1,040,644	-		ABCV34_RS04820	0.27	+1.4
1,040,644	-		ABCV34_RS04820	0.27	+0.0
1,040,644	-		ABCV34_RS04820	0.27	-3.5
1,040,644	-		ABCV34_RS04820	0.27	-1.0
1,040,644	-		ABCV34_RS04820	0.27	-3.9
1,040,644	-		ABCV34_RS04820	0.27	-1.8
1,040,644	-		ABCV34_RS04820	0.27	-1.5
1,040,644	-		ABCV34_RS04820	0.27	-1.4
1,040,644	-		ABCV34_RS04820	0.27	-2.6
1,040,644	-		ABCV34_RS04820	0.27	-0.2
1,040,644	-		ABCV34_RS04820	0.27	+0.9
1,040,644	-		ABCV34_RS04820	0.27	-3.1
1,040,644	-		ABCV34_RS04820	0.27	-1.6
1,040,644	-		ABCV34_RS04820	0.27	-0.7
1,040,671	-		ABCV34_RS04820	0.29	-3.0
1,040,925	+		ABCV34_RS04820	0.51	-1.5
1,040,925	+		ABCV34_RS04820	0.51	-1.2
1,040,925	+		ABCV34_RS04820	0.51	-1.5
1,040,925	+		ABCV34_RS04820	0.51	-2.6
1,040,926	-		ABCV34_RS04820	0.51	-1.2
1,040,926	-		ABCV34_RS04820	0.51	-1.6
1,040,926	-		ABCV34_RS04820	0.51	-5.1
1,040,926	-		ABCV34_RS04820	0.51	-2.5
1,040,926	-		ABCV34_RS04820	0.51	-3.1
1,041,004	-		ABCV34_RS04820	0.58	-4.1
1,041,004	-		ABCV34_RS04820	0.58	-0.3
1,041,004	-		ABCV34_RS04820	0.58	-2.2
1,041,042	+		ABCV34_RS04820	0.61	-1.8
1,041,043	-		ABCV34_RS04820	0.61	+3.0
1,041,043	-		ABCV34_RS04820	0.61	+0.4
1,041,133	+		ABCV34_RS04820	0.68	-3.2
1,041,133	+		ABCV34_RS04820	0.68	-1.7
1,041,133	+		ABCV34_RS04820	0.68	-3.3
1,041,133	+		ABCV34_RS04820	0.68	-1.6
1,041,134	-		ABCV34_RS04820	0.69	-3.9
1,041,134	-		ABCV34_RS04820	0.69	-2.6
1,041,134	-		ABCV34_RS04820	0.69	-2.0
1,041,135	+		ABCV34_RS04820	0.69	-1.7
1,041,135	+		ABCV34_RS04820	0.69	+1.6
1,041,135	+		ABCV34_RS04820	0.69	+1.5
1,041,135	+		ABCV34_RS04820	0.69	-0.4
1,041,135	+		ABCV34_RS04820	0.69	-1.6
1,041,135	+		ABCV34_RS04820	0.69	-0.0
1,041,135	+		ABCV34_RS04820	0.69	-2.7
1,041,135	+		ABCV34_RS04820	0.69	+0.8
1,041,135	+		ABCV34_RS04820	0.69	-0.8
1,041,136	-		ABCV34_RS04820	0.69	-0.1
1,041,136	-		ABCV34_RS04820	0.69	-3.9
1,041,136	-		ABCV34_RS04820	0.69	-1.4
1,041,136	-		ABCV34_RS04820	0.69	-2.9
1,041,136	-		ABCV34_RS04820	0.69	-4.7
1,041,136	-		ABCV34_RS04820	0.69	-1.5
1,041,136	-		ABCV34_RS04820	0.69	-4.0
1,041,136	-		ABCV34_RS04820	0.69	-3.0
1,041,136	-		ABCV34_RS04820	0.69	+1.0
1,041,312	+		ABCV34_RS04820	0.84	-2.1
1,041,312	+		ABCV34_RS04820	0.84	-1.0
1,041,312	+		ABCV34_RS04820	0.84	-1.8
1,041,312	+		ABCV34_RS04820	0.84	-1.4
1,041,312	+		ABCV34_RS04820	0.84	-0.6
1,041,312	+		ABCV34_RS04820	0.84	-1.5
1,041,312	+		ABCV34_RS04820	0.84	-3.3
1,041,312	+		ABCV34_RS04820	0.84	-1.2
1,041,312	+		ABCV34_RS04820	0.84	-0.4
1,041,312	+		ABCV34_RS04820	0.84	-4.0
1,041,312	+		ABCV34_RS04820	0.84	-3.0
1,041,312	+		ABCV34_RS04820	0.84	-3.8
1,041,312	+		ABCV34_RS04820	0.84	+1.0
1,041,312	+		ABCV34_RS04820	0.84	+0.3
1,041,312	+		ABCV34_RS04820	0.84	-2.0
1,041,312	+		ABCV34_RS04820	0.84	-1.2
1,041,312	+		ABCV34_RS04820	0.84	-3.0
1,041,313	-		ABCV34_RS04820	0.84	-3.3
1,041,313	-		ABCV34_RS04820	0.84	-4.3
1,041,313	-		ABCV34_RS04820	0.84	-1.8
1,041,313	-		ABCV34_RS04820	0.84	-0.2
1,041,313	-		ABCV34_RS04820	0.84	-3.1
1,041,313	-		ABCV34_RS04820	0.84	-4.1
1,041,313	-		ABCV34_RS04820	0.84	-0.4
1,041,313	-		ABCV34_RS04820	0.84	-0.9
1,041,313	-		ABCV34_RS04820	0.84	-0.4
1,041,313	-		ABCV34_RS04820	0.84	-2.8
1,041,313	-		ABCV34_RS04820	0.84	-2.1
1,041,313	-		ABCV34_RS04820	0.84	-0.2
1,041,313	-		ABCV34_RS04820	0.84	-3.0
1,041,313	-		ABCV34_RS04820	0.84	-1.4
1,041,313	-		ABCV34_RS04820	0.84	-5.3
1,041,313	-		ABCV34_RS04820	0.84	+3.0
1,041,313	-		ABCV34_RS04820	0.84	-3.6
1,041,313	-		ABCV34_RS04820	0.84	-0.2
1,041,313	-		ABCV34_RS04820	0.84	-3.4
1,041,313	-		ABCV34_RS04820	0.84	+0.2
1,041,313	-		ABCV34_RS04820	0.84	-2.3
1,041,313	-		ABCV34_RS04820	0.84	-2.5
1,041,313	-		ABCV34_RS04820	0.84	+0.4
1,041,313	-		ABCV34_RS04820	0.84	-2.6
1,041,313	-		ABCV34_RS04820	0.84	-1.2
1,041,313	-		ABCV34_RS04820	0.84	+1.3
1,041,313	-		ABCV34_RS04820	0.84	-1.5
1,041,496	+				-1.5
1,041,496	+				-1.5
1,041,497	-				-2.1
1,041,497	-				-1.4
1,041,497	-				-2.1
1,041,521	+				-3.8
1,041,521	+				-3.5
1,041,521	+				-1.1
1,041,521	+				-4.2
1,041,522	-				-1.7
1,041,559	+				+2.2
1,041,559	+				-1.5
1,041,560	-				-2.7
1,041,560	-				+0.4
1,041,632	-				-3.5
1,041,651	-				+0.6
1,041,690	+				-4.7
1,041,691	-				-1.8
1,041,691	-				-0.1
1,041,694	+				+1.7
1,041,694	+				-2.4
1,041,694	+				-0.8
1,041,694	+				-1.2
1,041,694	+				-4.0
1,041,694	+				-3.8
1,041,694	+				-3.7
1,041,694	+				-3.7
1,041,694	+				-1.9
1,041,694	+				-1.9
1,041,695	-				+0.1
1,041,695	-				-3.0
1,041,695	-				+0.5
1,041,695	-				-2.3
1,041,695	-				-1.3
1,041,695	-				-1.2
1,041,695	-				-0.7
1,041,695	-				-3.4
1,041,695	-				-4.1
1,041,952	+		ABCV34_RS04825	0.33	-3.3
1,042,149	-		ABCV34_RS04825	0.54	-1.9
1,042,458	+		ABCV34_RS04825	0.86	-1.7
1,042,458	+		ABCV34_RS04825	0.86	+1.2
1,042,459	-		ABCV34_RS04825	0.86	-0.4
1,042,459	-		ABCV34_RS04825	0.86	-0.4
1,042,635	+				-3.1
1,042,667	+				-2.4
1,042,667	+				-1.4
1,042,667	+				+1.0
1,042,667	+				+0.4
1,042,667	+				-3.9
1,042,667	+				-0.6
1,042,667	+				-3.6
1,042,667	+				-0.1
1,042,667	+				+1.3
1,042,667	+				-2.0
1,042,667	+				-1.9
1,042,667	+				-1.9
1,042,667	+				-2.6
1,042,667	+				-0.6
1,042,667	+				-3.2
1,042,667	+				-4.9
1,042,667	+				-1.9
1,042,667	+				-0.8
1,042,667	+				-1.4
1,042,668	-				-1.6
1,042,668	-				-2.7
1,042,668	-				+0.7
1,042,668	-				-0.9
1,042,668	-				+1.6
1,042,668	-				-0.1
1,042,668	-				+2.0
1,042,668	-				-1.5
1,042,668	-				-0.8
1,042,668	-				-3.5
1,042,668	-				-0.6
1,042,668	-				-2.7
1,042,693	+				-3.0
1,042,693	+				-1.9
1,042,693	+				-1.3
1,042,693	+				+0.2
1,042,693	+				-0.4
1,042,693	+				+2.8
1,042,693	+				-0.2
1,042,693	+				-0.8
1,042,694	-				-3.2
1,042,694	-				-2.1
1,042,694	-				+0.3
1,042,716	+				+0.8
1,042,716	+				-1.5
1,042,716	+				-1.0
1,042,716	+				+0.5
1,042,716	+				-1.9
1,042,717	-				+1.3
1,042,717	-				-1.6
1,042,759	+				-0.0
1,042,759	+				-1.0
1,042,760	-				-1.0
1,042,760	-				-4.3
1,042,760	-				-1.6
1,042,808	+				+1.0
1,042,808	+				-2.7
1,042,809	-				-0.4
1,042,809	-				+0.2
1,042,809	-				-1.6
1,042,822	+				-1.8
1,042,822	+				+1.1
1,042,822	+				+1.9
1,042,822	+				-1.4
1,042,822	+				-1.5
1,042,823	-				-0.4
1,042,823	-				-0.3
1,042,823	-				+0.2
1,042,823	-				-2.8
1,042,823	-				-0.0
1,042,823	-				-0.2
1,042,823	-				-3.6
1,042,823	-				-3.9
1,042,824	+				-3.8
1,042,998	+		ABCV34_RS04830	0.25	-3.1
1,042,999	-		ABCV34_RS04830	0.25	-3.8
1,042,999	-		ABCV34_RS04830	0.25	-2.0
1,042,999	-		ABCV34_RS04830	0.25	-1.8
1,042,999	-		ABCV34_RS04830	0.25	-1.8
1,042,999	-		ABCV34_RS04830	0.25	-2.9
1,043,040	+		ABCV34_RS04830	0.30	-1.2
1,043,094	+		ABCV34_RS04830	0.38	-4.3
1,043,094	+		ABCV34_RS04830	0.38	+1.6
1,043,095	-		ABCV34_RS04830	0.38	+0.6
1,043,095	-		ABCV34_RS04830	0.38	-3.4
1,043,095	-		ABCV34_RS04830	0.38	-4.0
1,043,095	-		ABCV34_RS04830	0.38	-1.0
1,043,095	-		ABCV34_RS04830	0.38	-0.6
1,043,540	-				+0.1
1,043,556	+				-4.3
1,043,556	+				-0.8
1,043,556	+				-1.4
1,043,556	+				-0.2
1,043,556	+				-0.6
1,043,556	+				-2.7
1,043,556	+				+1.7
1,043,556	+				-0.1
1,043,556	+				-4.4
1,043,556	+				-0.4
1,043,557	-				-0.6
1,043,557	-				-4.5
1,043,557	-				-1.7
1,043,557	-				-1.7
1,043,557	-				-4.3
1,043,557	-				-1.5
1,043,557	-				-1.6
1,043,557	-				+1.1
1,043,557	-				-3.6
1,043,557	-				+1.4
1,043,557	-				-2.0
1,043,557	-				-1.2
1,043,571	+				+0.4
1,043,571	+				-0.6
1,043,571	+				-4.2
1,043,571	+				-3.2
1,043,571	+				-1.5
1,043,572	-				+2.5
1,043,572	-				-0.1
1,043,572	-				-0.5