Experiment: Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABCV34_RS04305 and ABCV34_RS04310 overlap by 24 nucleotides ABCV34_RS04310 and ABCV34_RS04315 are separated by 71 nucleotides
ABCV34_RS04305: ABCV34_RS04305 - methyl-accepting chemotaxis protein, at 940,442 to 942,040
_RS04305
ABCV34_RS04310: ABCV34_RS04310 - MerR family transcriptional regulator, at 942,017 to 942,445
_RS04310
ABCV34_RS04315: ABCV34_RS04315 - YdiU family protein, at 942,517 to 943,986
_RS04315
Position (kb) 942
943 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 941.284 kb on + strand, within ABCV34_RS04305 at 941.285 kb on - strand, within ABCV34_RS04305 at 941.359 kb on + strand, within ABCV34_RS04305 at 941.478 kb on + strand, within ABCV34_RS04305 at 941.478 kb on + strand, within ABCV34_RS04305 at 941.479 kb on - strand, within ABCV34_RS04305 at 941.479 kb on - strand, within ABCV34_RS04305 at 941.479 kb on - strand, within ABCV34_RS04305 at 941.479 kb on - strand, within ABCV34_RS04305 at 941.545 kb on + strand, within ABCV34_RS04305 at 941.545 kb on + strand, within ABCV34_RS04305 at 941.545 kb on + strand, within ABCV34_RS04305 at 941.545 kb on + strand, within ABCV34_RS04305 at 941.545 kb on + strand, within ABCV34_RS04305 at 941.546 kb on - strand, within ABCV34_RS04305 at 941.546 kb on - strand, within ABCV34_RS04305 at 941.683 kb on + strand, within ABCV34_RS04305 at 941.684 kb on - strand, within ABCV34_RS04305 at 942.387 kb on + strand, within ABCV34_RS04310 at 942.388 kb on - strand, within ABCV34_RS04310 at 942.446 kb on - strand at 942.446 kb on - strand at 942.483 kb on + strand at 942.483 kb on + strand at 942.483 kb on + strand at 942.483 kb on + strand at 942.483 kb on + strand at 942.484 kb on - strand at 942.484 kb on - strand at 942.484 kb on - strand at 942.484 kb on - strand at 942.484 kb on - strand at 942.484 kb on - strand at 942.486 kb on + strand at 942.486 kb on + strand at 942.486 kb on + strand at 942.486 kb on + strand at 942.486 kb on + strand at 942.486 kb on + strand at 942.487 kb on - strand at 942.487 kb on - strand at 942.487 kb on - strand at 942.487 kb on - strand at 942.487 kb on - strand at 942.487 kb on - strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.490 kb on + strand at 942.491 kb on - strand at 942.491 kb on - strand at 942.491 kb on - strand at 942.491 kb on - strand at 942.491 kb on - strand at 942.491 kb on - strand at 942.572 kb on + strand at 942.572 kb on + strand at 942.572 kb on + strand at 942.572 kb on + strand at 942.572 kb on + strand at 942.572 kb on + strand at 942.573 kb on - strand at 942.573 kb on - strand at 942.573 kb on - strand at 942.599 kb on + strand at 942.599 kb on + strand at 942.599 kb on + strand at 942.599 kb on + strand at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.698 kb on + strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.699 kb on - strand, within ABCV34_RS04315 at 942.773 kb on + strand, within ABCV34_RS04315 at 942.774 kb on - strand, within ABCV34_RS04315 at 942.774 kb on - strand, within ABCV34_RS04315 at 942.774 kb on - strand, within ABCV34_RS04315 at 942.980 kb on + strand, within ABCV34_RS04315 at 942.981 kb on - strand, within ABCV34_RS04315 at 942.981 kb on - strand, within ABCV34_RS04315 at 943.073 kb on + strand, within ABCV34_RS04315 at 943.073 kb on + strand, within ABCV34_RS04315 at 943.073 kb on + strand, within ABCV34_RS04315 at 943.073 kb on + strand, within ABCV34_RS04315 at 943.074 kb on - strand, within ABCV34_RS04315 at 943.074 kb on - strand, within ABCV34_RS04315 at 943.074 kb on - strand, within ABCV34_RS04315 at 943.074 kb on - strand, within ABCV34_RS04315 at 943.179 kb on - strand, within ABCV34_RS04315 at 943.179 kb on - strand, within ABCV34_RS04315 at 943.179 kb on - strand, within ABCV34_RS04315 at 943.179 kb on - strand, within ABCV34_RS04315 at 943.188 kb on - strand, within ABCV34_RS04315 at 943.382 kb on + strand, within ABCV34_RS04315 at 943.382 kb on + strand, within ABCV34_RS04315 at 943.382 kb on + strand, within ABCV34_RS04315 at 943.382 kb on + strand, within ABCV34_RS04315 at 943.382 kb on + strand, within ABCV34_RS04315 at 943.382 kb on + strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315 at 943.383 kb on - strand, within ABCV34_RS04315
Per-strain Table
Position Strand Gene LocusTag Fraction Survival; Treatment=20250415-U1-SZ1-UF; TreatmentDuration=24hrs; Outgrowth=R2A_Kan10_Lactate remove 941,284 + ABCV34_RS04305 0.53 +0.6 941,285 - ABCV34_RS04305 0.53 -1.4 941,359 + ABCV34_RS04305 0.57 -0.2 941,478 + ABCV34_RS04305 0.65 -1.6 941,478 + ABCV34_RS04305 0.65 -2.1 941,479 - ABCV34_RS04305 0.65 -0.4 941,479 - ABCV34_RS04305 0.65 -1.2 941,479 - ABCV34_RS04305 0.65 +0.5 941,479 - ABCV34_RS04305 0.65 -1.9 941,545 + ABCV34_RS04305 0.69 -0.7 941,545 + ABCV34_RS04305 0.69 +0.3 941,545 + ABCV34_RS04305 0.69 -0.8 941,545 + ABCV34_RS04305 0.69 -0.1 941,545 + ABCV34_RS04305 0.69 -0.1 941,546 - ABCV34_RS04305 0.69 -2.9 941,546 - ABCV34_RS04305 0.69 -2.8 941,683 + ABCV34_RS04305 0.78 -1.6 941,684 - ABCV34_RS04305 0.78 -0.4 942,387 + ABCV34_RS04310 0.86 -1.0 942,388 - ABCV34_RS04310 0.86 +0.3 942,446 - +1.9 942,446 - -1.6 942,483 + -2.9 942,483 + -2.3 942,483 + -1.9 942,483 + +0.9 942,483 + -3.6 942,484 - -1.4 942,484 - -3.2 942,484 - -1.7 942,484 - -0.9 942,484 - -1.0 942,484 - -0.7 942,486 + +0.1 942,486 + +0.3 942,486 + -0.5 942,486 + -1.4 942,486 + +0.5 942,486 + -1.2 942,487 - -4.3 942,487 - -0.5 942,487 - -2.2 942,487 - -2.4 942,487 - -0.9 942,487 - -1.5 942,490 + -0.0 942,490 + -2.1 942,490 + -2.1 942,490 + -2.9 942,490 + -1.9 942,490 + -1.2 942,490 + -0.8 942,490 + -3.0 942,490 + -1.0 942,490 + +0.2 942,491 - -2.9 942,491 - -0.1 942,491 - -3.6 942,491 - -2.6 942,491 - -2.1 942,491 - -2.2 942,572 + +0.6 942,572 + -3.0 942,572 + -2.6 942,572 + -4.0 942,572 + -3.6 942,572 + +1.1 942,573 - -3.8 942,573 - +0.7 942,573 - -3.4 942,599 + -1.3 942,599 + -2.6 942,599 + -0.3 942,599 + -2.3 942,698 + ABCV34_RS04315 0.12 -0.6 942,698 + ABCV34_RS04315 0.12 -2.3 942,698 + ABCV34_RS04315 0.12 -2.1 942,698 + ABCV34_RS04315 0.12 -0.9 942,698 + ABCV34_RS04315 0.12 -0.1 942,698 + ABCV34_RS04315 0.12 -3.1 942,698 + ABCV34_RS04315 0.12 -2.0 942,698 + ABCV34_RS04315 0.12 -1.8 942,698 + ABCV34_RS04315 0.12 -0.1 942,698 + ABCV34_RS04315 0.12 +2.6 942,698 + ABCV34_RS04315 0.12 -2.5 942,698 + ABCV34_RS04315 0.12 +0.1 942,698 + ABCV34_RS04315 0.12 -3.0 942,698 + ABCV34_RS04315 0.12 -0.4 942,698 + ABCV34_RS04315 0.12 -3.3 942,698 + ABCV34_RS04315 0.12 -0.2 942,698 + ABCV34_RS04315 0.12 -2.4 942,698 + ABCV34_RS04315 0.12 -1.6 942,698 + ABCV34_RS04315 0.12 -2.0 942,698 + ABCV34_RS04315 0.12 +0.6 942,698 + ABCV34_RS04315 0.12 -0.7 942,699 - ABCV34_RS04315 0.12 -0.7 942,699 - ABCV34_RS04315 0.12 -2.8 942,699 - ABCV34_RS04315 0.12 -1.1 942,699 - ABCV34_RS04315 0.12 -3.3 942,699 - ABCV34_RS04315 0.12 -1.4 942,699 - ABCV34_RS04315 0.12 -2.8 942,699 - ABCV34_RS04315 0.12 +0.2 942,699 - ABCV34_RS04315 0.12 +0.2 942,699 - ABCV34_RS04315 0.12 -2.1 942,699 - ABCV34_RS04315 0.12 -3.3 942,773 + ABCV34_RS04315 0.17 -2.1 942,774 - ABCV34_RS04315 0.17 -2.5 942,774 - ABCV34_RS04315 0.17 -3.3 942,774 - ABCV34_RS04315 0.17 -4.2 942,980 + ABCV34_RS04315 0.31 -3.0 942,981 - ABCV34_RS04315 0.32 +0.2 942,981 - ABCV34_RS04315 0.32 -1.5 943,073 + ABCV34_RS04315 0.38 -1.1 943,073 + ABCV34_RS04315 0.38 -2.6 943,073 + ABCV34_RS04315 0.38 +1.1 943,073 + ABCV34_RS04315 0.38 -0.5 943,074 - ABCV34_RS04315 0.38 -1.5 943,074 - ABCV34_RS04315 0.38 -2.6 943,074 - ABCV34_RS04315 0.38 -2.0 943,074 - ABCV34_RS04315 0.38 -2.9 943,179 - ABCV34_RS04315 0.45 -1.8 943,179 - ABCV34_RS04315 0.45 +0.9 943,179 - ABCV34_RS04315 0.45 -2.8 943,179 - ABCV34_RS04315 0.45 -2.2 943,188 - ABCV34_RS04315 0.46 -1.0 943,382 + ABCV34_RS04315 0.59 -1.4 943,382 + ABCV34_RS04315 0.59 -0.1 943,382 + ABCV34_RS04315 0.59 -2.9 943,382 + ABCV34_RS04315 0.59 -1.5 943,382 + ABCV34_RS04315 0.59 -1.4 943,382 + ABCV34_RS04315 0.59 +0.2 943,383 - ABCV34_RS04315 0.59 +1.8 943,383 - ABCV34_RS04315 0.59 -0.3 943,383 - ABCV34_RS04315 0.59 -1.5 943,383 - ABCV34_RS04315 0.59 -2.7 943,383 - ABCV34_RS04315 0.59 +1.6 943,383 - ABCV34_RS04315 0.59 -0.0 943,383 - ABCV34_RS04315 0.59 -4.2 943,383 - ABCV34_RS04315 0.59 -1.2 943,383 - ABCV34_RS04315 0.59 +1.6
Or see this region's nucleotide sequence